Wall clock time and date at job start Sat Mar 6 2021 01:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 C 1.52995 * 109.47643 * 190.93802 * 6 5 4 8 8 O 1.42901 * 109.47074 * 293.54788 * 7 6 5 9 9 C 1.35900 * 117.00200 * 179.97438 * 8 7 6 10 10 C 1.38716 * 120.05639 * 359.72293 * 9 8 7 11 11 C 1.38166 * 119.94490 * 179.71962 * 10 9 8 12 12 C 1.50702 * 119.97222 * 180.27805 * 11 10 9 13 13 F 1.39894 * 109.46739 * 180.30236 * 12 11 10 14 14 F 1.39904 * 109.46852 * 300.30094 * 12 11 10 15 15 F 1.39893 * 109.46980 * 60.29795 * 12 11 10 16 16 C 1.38242 * 120.05311 * 0.57705 * 11 10 9 17 17 C 1.38284 * 120.11500 * 359.67981 * 16 11 10 18 18 C 1.38122 * 120.05269 * 0.03937 * 17 16 11 19 19 C 1.50707 * 120.02850 * 179.97438 * 18 17 16 20 20 O 1.42895 * 109.47171 * 105.02250 * 19 18 17 21 21 Si 1.86305 * 109.46717 * 345.02458 * 19 18 17 22 22 H 1.48496 * 109.47512 * 59.99870 * 21 19 18 23 23 H 1.48504 * 109.47015 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47215 * 299.99634 * 21 19 18 25 25 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 26 26 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 27 27 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 28 28 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 30 30 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 32 32 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 33 33 H 1.08999 * 111.05229 * 356.11516 * 4 2 1 34 34 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 35 35 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 36 36 H 1.09004 * 109.47418 * 70.93608 * 6 5 4 37 37 H 1.09007 * 109.46916 * 53.54343 * 7 6 5 38 38 H 1.09005 * 109.47687 * 173.54545 * 7 6 5 39 39 H 1.08004 * 120.02531 * 0.02562 * 10 9 8 40 40 H 1.08005 * 119.94320 * 179.69619 * 16 11 10 41 41 H 1.07997 * 119.97609 * 180.02562 * 17 16 11 42 42 H 1.09000 * 109.47388 * 225.02603 * 19 18 17 43 43 H 0.96708 * 113.99825 * 300.00493 * 20 19 18 44 44 H 1.08996 * 111.41269 * 283.05303 * 25 6 5 45 45 H 1.09006 * 111.49251 * 158.06559 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1417 -2.9771 -1.5067 8 8 5.3027 -3.5593 -0.9107 9 6 5.8104 -4.6706 -1.5059 10 6 5.2004 -5.1932 -2.6368 11 6 5.7220 -6.3197 -3.2434 12 6 5.0634 -6.8844 -4.4757 13 9 5.7627 -8.0195 -4.8995 14 9 3.7417 -7.2346 -4.1791 15 9 5.0742 -5.9233 -5.4922 16 6 6.8438 -6.9328 -2.7174 17 6 7.4507 -6.4169 -1.5870 18 6 6.9366 -5.2876 -0.9802 19 6 7.5981 -4.7261 0.2520 20 8 8.3271 -3.5469 -0.0942 21 14 8.7660 -5.9924 0.9614 22 1 9.8027 -6.3296 -0.0469 23 1 9.4174 -5.4394 2.1760 24 1 8.0084 -7.2179 1.3212 25 6 2.5568 -1.0142 -1.4447 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 2.1907 2.2612 0.8899 30 1 3.6274 1.7027 -0.0005 31 1 2.1908 2.2612 -0.8900 32 1 3.2797 -0.4330 2.0151 33 1 1.7543 -1.3786 2.0840 34 1 4.1055 -2.5196 1.2701 35 1 2.5407 -3.0054 0.5873 36 1 4.5675 -1.0680 -0.6042 37 1 3.3305 -3.7052 -1.5088 38 1 4.3683 -2.6826 -2.5315 39 1 4.3214 -4.7171 -3.0456 40 1 7.2471 -7.8162 -3.1902 41 1 8.3272 -6.8974 -1.1782 42 1 6.8371 -4.4787 0.9922 43 1 9.0226 -3.6928 -0.7501 44 1 1.8198 -1.7216 -1.8246 45 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_15244776_18051908.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:28:44 Heat of formation + Delta-G solvation = -236.356498 kcal Electronic energy + Delta-G solvation = -29238.176967 eV Core-core repulsion = 24736.356372 eV Total energy + Delta-G solvation = -4501.820596 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.128 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.29106 -48.80559 -48.76223 -41.65683 -39.22342 -37.70329 -36.66107 -33.59199 -31.48029 -30.50665 -29.11462 -28.54182 -28.38014 -27.35029 -25.31673 -24.38062 -23.40698 -22.54181 -20.75660 -20.11196 -19.61624 -19.55575 -18.38475 -17.93801 -17.22816 -17.16164 -16.60092 -16.11547 -15.80128 -15.67672 -15.63639 -15.42602 -15.19120 -15.17500 -15.11644 -14.91978 -14.91128 -14.42228 -14.15973 -13.91079 -13.83387 -13.79633 -13.68989 -13.47172 -13.30472 -13.26359 -13.17123 -12.77018 -12.63398 -12.30031 -12.21283 -12.16467 -11.99492 -11.70948 -11.61711 -11.37366 -10.76880 -10.46569 -10.41826 -10.39188 -10.27488 -9.46264 -0.38612 0.11064 1.13971 1.43596 1.49634 1.53968 1.68654 1.92466 2.00431 2.02225 2.12370 2.20529 2.55066 2.64202 2.88931 3.27568 3.46227 3.56238 3.68366 3.76097 3.88536 3.92213 4.03123 4.04704 4.23154 4.35436 4.36741 4.53258 4.54889 4.65801 4.69590 4.74041 4.81176 4.83537 4.84997 4.85332 4.85749 4.96837 5.03820 5.11766 5.21925 5.34562 5.37354 5.49598 5.53030 5.60191 5.64390 6.22721 6.72097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.455 4.455 2 Si 1.040 2.960 3 C -0.457 4.457 4 C -0.415 4.415 5 C -0.110 4.110 6 C -0.081 4.081 7 C 0.055 3.945 8 O -0.307 6.307 9 C 0.148 3.852 10 C -0.169 4.169 11 C -0.146 4.146 12 C 0.510 3.490 13 F -0.175 7.175 14 F -0.180 7.180 15 F -0.180 7.180 16 C -0.107 4.107 17 C -0.087 4.087 18 C -0.129 4.129 19 C -0.077 4.077 20 O -0.547 6.547 21 Si 0.983 3.017 22 H -0.233 1.233 23 H -0.274 1.274 24 H -0.253 1.253 25 C -0.401 4.401 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.147 0.853 40 H 0.160 0.840 41 H 0.162 0.838 42 H 0.113 0.887 43 H 0.387 0.613 44 H 0.088 0.912 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.086 0.813 0.845 1.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.233 2.767 3 C -0.565 4.565 4 C -0.499 4.499 5 C -0.148 4.148 6 C -0.100 4.100 7 C -0.019 4.019 8 O -0.220 6.220 9 C 0.101 3.899 10 C -0.188 4.188 11 C -0.148 4.148 12 C 0.456 3.544 13 F -0.156 7.156 14 F -0.161 7.161 15 F -0.161 7.161 16 C -0.125 4.125 17 C -0.105 4.105 18 C -0.130 4.130 19 C -0.186 4.186 20 O -0.354 6.354 21 Si 0.805 3.195 22 H -0.156 1.156 23 H -0.199 1.199 24 H -0.177 1.177 25 C -0.486 4.486 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.165 0.835 40 H 0.178 0.822 41 H 0.179 0.821 42 H 0.131 0.869 43 H 0.236 0.764 44 H 0.107 0.893 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.258 0.599 1.752 1.870 hybrid contribution -0.299 -0.149 -1.042 1.094 sum -0.040 0.451 0.710 0.842 Atomic orbital electron populations 1.26162 1.20856 1.04610 1.04596 0.79416 0.65838 0.65693 0.65707 1.26197 1.06624 1.19025 1.04618 1.26706 1.05558 1.06544 1.11107 1.21710 1.00106 0.98604 0.94340 1.21694 0.99046 0.94724 0.94522 1.23274 0.85441 0.95606 0.97593 1.86197 1.44570 1.38430 1.52771 1.18733 0.92766 0.87247 0.91144 1.21083 1.02684 0.97717 0.97320 1.19805 0.99663 0.99112 0.96210 1.18327 0.76521 0.75752 0.83846 1.93179 1.78740 1.52505 1.91167 1.93224 1.37341 1.92317 1.93267 1.93222 1.96314 1.63806 1.62802 1.21118 0.94048 1.00886 0.96455 1.21207 1.00103 0.94364 0.94819 1.20146 0.95872 0.96996 0.99981 1.25047 1.01154 0.95973 0.96444 1.86550 1.51828 1.32164 1.64862 0.85261 0.78366 0.76170 0.79740 1.15635 1.19935 1.17690 1.26964 1.02268 1.08132 1.11201 0.90929 0.91188 0.91083 0.91139 0.91370 0.90920 0.90915 0.90287 0.92837 0.91927 0.90197 0.91077 0.91188 0.83521 0.82229 0.82070 0.86947 0.76382 0.89341 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.97 8.65 113.37 0.98 2.95 16 2 Si 1.04 -6.31 13.35 68.60 0.92 -5.39 16 3 C -0.46 1.66 8.65 113.37 0.98 2.64 16 4 C -0.41 0.93 5.85 72.72 0.43 1.36 16 5 C -0.11 0.02 5.21 31.52 0.16 0.19 16 6 C -0.08 0.10 2.40 -9.54 -0.02 0.08 16 7 C 0.06 0.00 4.11 71.98 0.30 0.29 16 8 O -0.31 -1.19 9.25 -92.42 -0.85 -2.04 16 9 C 0.15 0.45 6.66 22.51 0.15 0.60 16 10 C -0.17 -0.36 8.59 22.37 0.19 -0.17 16 11 C -0.15 -0.30 5.37 -19.88 -0.11 -0.40 16 12 C 0.51 1.73 3.32 71.24 0.24 1.96 16 13 F -0.17 -0.59 15.97 44.97 0.72 0.13 16 14 F -0.18 -0.89 17.23 44.97 0.77 -0.11 16 15 F -0.18 -0.89 17.24 44.97 0.78 -0.12 16 16 C -0.11 0.09 9.43 22.28 0.21 0.30 16 17 C -0.09 0.17 8.66 22.25 0.19 0.36 16 18 C -0.13 -0.10 5.27 -19.77 -0.10 -0.21 16 19 C -0.08 0.02 2.38 71.24 0.17 0.18 16 20 O -0.55 -0.74 12.88 -148.98 -1.92 -2.66 16 21 Si 0.98 -2.74 25.49 68.60 1.75 -0.99 16 22 H -0.23 1.26 6.73 99.48 0.67 1.93 16 23 H -0.27 -0.37 7.11 99.48 0.71 0.34 16 24 H -0.25 0.45 7.11 99.48 0.71 1.15 16 25 C -0.40 1.89 5.30 73.05 0.39 2.28 16 26 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 27 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 28 H 0.07 -0.28 7.96 -2.38 -0.02 -0.30 16 29 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 30 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 31 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 32 H 0.07 -0.10 8.04 -2.39 -0.02 -0.12 16 33 H 0.08 -0.19 8.04 -2.39 -0.02 -0.21 16 34 H 0.05 0.15 8.12 -2.39 -0.02 0.13 16 35 H 0.06 -0.05 8.04 -2.39 -0.02 -0.07 16 36 H 0.08 0.00 8.14 -2.39 -0.02 -0.02 16 37 H 0.07 -0.12 7.58 -2.38 -0.02 -0.14 16 38 H 0.07 -0.09 7.68 -2.38 -0.02 -0.11 16 39 H 0.15 -0.01 6.30 -2.91 -0.02 -0.03 16 40 H 0.16 -0.70 7.15 -2.91 -0.02 -0.72 16 41 H 0.16 -1.06 4.89 -2.91 -0.01 -1.08 16 42 H 0.11 0.10 7.83 -2.39 -0.02 0.08 16 43 H 0.39 -2.30 8.70 -74.05 -0.64 -2.95 16 44 H 0.09 -0.50 8.03 -2.39 -0.02 -0.52 16 45 H 0.09 -0.48 8.06 -2.38 -0.02 -0.50 16 Total: 0.00 -10.68 376.56 7.39 -3.29 By element: Atomic # 1 Polarization: -5.59 SS G_CDS: 1.08 Total: -4.51 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 4.15 Total: 12.41 kcal Atomic # 8 Polarization: -1.93 SS G_CDS: -2.77 Total: -4.70 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 2.27 Total: -0.10 kcal Atomic # 14 Polarization: -9.05 SS G_CDS: 2.66 Total: -6.38 kcal Total: -10.68 7.39 -3.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_15244776_18051908.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -233.067 kcal (2) G-P(sol) polarization free energy of solvation -10.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -3.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds