Wall clock time and date at job start Fri Mar 5 2021 23:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 C 1.52995 * 109.47643 * 190.93802 * 6 5 4 8 8 O 1.42901 * 109.47074 * 293.54788 * 7 6 5 9 9 C 1.35900 * 117.00200 * 179.97438 * 8 7 6 10 10 C 1.38716 * 120.05639 * 359.72293 * 9 8 7 11 11 C 1.38166 * 119.94609 * 179.79011 * 10 9 8 12 12 N 1.48004 * 119.97167 * 180.22737 * 11 10 9 13 13 O 1.21798 * 119.99871 * 180.25711 * 12 11 10 14 14 O 1.21800 * 120.00183 * 0.25657 * 12 11 10 15 15 C 1.38244 * 120.05328 * 0.48865 * 11 10 9 16 16 C 1.38288 * 120.11420 * 359.74005 * 15 11 10 17 17 C 1.38123 * 120.05188 * 0.02562 * 16 15 11 18 18 C 1.50700 * 120.02508 * 179.97438 * 17 16 15 19 19 O 1.42907 * 109.47217 * 105.02291 * 18 17 16 20 20 Si 1.86297 * 109.47235 * 345.02485 * 18 17 16 21 21 H 1.48501 * 109.47388 * 60.00100 * 20 18 17 22 22 H 1.48508 * 109.47214 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46934 * 299.99558 * 20 18 17 24 24 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 25 25 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 26 26 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 27 27 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 29 29 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 31 31 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 32 32 H 1.08999 * 111.05229 * 356.11516 * 4 2 1 33 33 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 34 34 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 35 35 H 1.09004 * 109.47418 * 70.93608 * 6 5 4 36 36 H 1.09007 * 109.46916 * 53.54343 * 7 6 5 37 37 H 1.09005 * 109.47687 * 173.54545 * 7 6 5 38 38 H 1.07999 * 120.02692 * 0.02562 * 10 9 8 39 39 H 1.08001 * 119.94349 * 179.72107 * 15 11 10 40 40 H 1.07997 * 119.97602 * 180.02562 * 16 15 11 41 41 H 1.09005 * 109.47445 * 225.02112 * 18 17 16 42 42 H 0.96695 * 114.00379 * 179.97438 * 19 18 17 43 43 H 1.08996 * 111.41269 * 283.05303 * 24 6 5 44 44 H 1.09006 * 111.49251 * 158.06559 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1417 -2.9771 -1.5067 8 8 5.3027 -3.5593 -0.9107 9 6 5.8104 -4.6706 -1.5059 10 6 5.2004 -5.1932 -2.6368 11 6 5.7211 -6.3206 -3.2426 12 7 5.0736 -6.8758 -4.4522 13 8 5.5294 -7.8723 -4.9839 14 8 4.0850 -6.3362 -4.9158 15 6 6.8431 -6.9335 -2.7168 16 6 7.4504 -6.4172 -1.5867 17 6 6.9366 -5.2876 -0.9802 18 6 7.5985 -4.7258 0.2516 19 8 8.3276 -3.5467 -0.0952 20 14 8.7664 -5.9919 0.9612 21 1 9.8028 -6.3295 -0.0473 22 1 9.4191 -5.4381 2.1747 23 1 8.0086 -7.2171 1.3217 24 6 2.5568 -1.0142 -1.4447 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.1907 2.2612 0.8899 29 1 3.6274 1.7027 -0.0005 30 1 2.1908 2.2612 -0.8900 31 1 3.2797 -0.4330 2.0151 32 1 1.7543 -1.3786 2.0840 33 1 4.1055 -2.5196 1.2701 34 1 2.5407 -3.0054 0.5873 35 1 4.5675 -1.0680 -0.6042 36 1 3.3305 -3.7052 -1.5088 37 1 4.3683 -2.6826 -2.5315 38 1 4.3214 -4.7172 -3.0456 39 1 7.2460 -7.8172 -3.1891 40 1 8.3271 -6.8975 -1.1780 41 1 6.8377 -4.4779 0.9919 42 1 8.7802 -3.1304 0.6510 43 1 1.8198 -1.7216 -1.8246 44 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_7_16525086_18051908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:05:09 Heat of formation + Delta-G solvation = -93.826778 kcal Electronic energy + Delta-G solvation = -25767.657498 eV Core-core repulsion = 22004.900565 eV Total energy + Delta-G solvation = -3762.756933 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.15083 -41.70600 -39.35014 -37.80585 -37.48100 -36.82575 -33.72632 -31.76096 -30.70283 -29.31731 -28.83568 -28.58853 -27.57237 -25.54338 -24.59057 -23.62190 -22.74742 -20.98996 -20.65567 -19.63743 -18.73258 -18.44541 -18.21730 -17.57340 -17.33481 -17.13547 -16.35159 -15.97511 -15.62006 -15.43243 -14.82420 -14.59326 -14.47626 -14.13756 -14.02609 -14.01693 -13.83722 -13.67108 -13.46565 -13.37298 -13.32518 -12.85536 -12.65906 -12.50945 -12.45500 -12.36754 -12.29441 -12.08214 -12.03470 -11.97859 -11.79873 -11.53537 -10.97497 -10.73345 -10.68174 -10.52178 -10.46907 -9.74029 -1.27258 -0.21235 0.28639 0.37835 0.89720 1.24208 1.30529 1.44328 1.69880 1.75414 1.77504 1.86994 2.01493 2.43774 3.02049 3.19119 3.37624 3.47511 3.59355 3.69945 3.78412 3.79182 3.91003 4.02051 4.18205 4.23641 4.35002 4.40625 4.45952 4.51769 4.56404 4.58095 4.61601 4.64791 4.65416 4.66072 4.77007 4.92717 4.97100 5.03245 5.19277 5.29988 5.33251 5.39276 5.41051 5.44116 5.96884 6.41068 6.69186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 0.971 3.029 3 C -0.443 4.443 4 C -0.399 4.399 5 C -0.110 4.110 6 C -0.081 4.081 7 C 0.057 3.943 8 O -0.290 6.290 9 C 0.166 3.834 10 C -0.155 4.155 11 C 0.001 3.999 12 N 0.025 4.975 13 O -0.149 6.149 14 O -0.156 6.156 15 C -0.087 4.087 16 C -0.084 4.084 17 C -0.059 4.059 18 C -0.078 4.078 19 O -0.538 6.538 20 Si 0.940 3.060 21 H -0.243 1.243 22 H -0.248 1.248 23 H -0.244 1.244 24 C -0.396 4.396 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.154 0.846 41 H 0.085 0.915 42 H 0.384 0.616 43 H 0.083 0.917 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.588 2.909 5.478 6.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.168 2.832 3 C -0.551 4.551 4 C -0.485 4.485 5 C -0.147 4.147 6 C -0.099 4.099 7 C -0.018 4.018 8 O -0.202 6.202 9 C 0.118 3.882 10 C -0.174 4.174 11 C -0.081 4.081 12 N 0.546 4.454 13 O -0.367 6.367 14 O -0.372 6.372 15 C -0.106 4.106 16 C -0.102 4.102 17 C -0.060 4.060 18 C -0.188 4.188 19 O -0.344 6.344 20 Si 0.761 3.239 21 H -0.167 1.167 22 H -0.171 1.171 23 H -0.167 1.167 24 C -0.481 4.481 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.178 0.822 39 H 0.178 0.822 40 H 0.171 0.829 41 H 0.103 0.897 42 H 0.231 0.769 43 H 0.102 0.898 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.259 2.578 5.997 6.648 hybrid contribution -0.369 0.182 -0.278 0.497 sum 0.890 2.761 5.719 6.412 Atomic orbital electron populations 1.26019 1.19891 1.04634 1.04571 0.80467 0.67477 0.67550 0.67666 1.26019 1.06661 1.17841 1.04592 1.26502 1.05546 1.06273 1.10175 1.21719 1.00623 0.98278 0.94096 1.21698 0.98882 0.94750 0.94596 1.23243 0.85373 0.95518 0.97633 1.86213 1.44225 1.37743 1.52033 1.18412 0.92251 0.87213 0.90332 1.21081 1.02977 0.96549 0.96823 1.20835 0.98436 0.98793 0.90061 1.43586 1.00182 1.00084 1.01549 1.94567 1.66578 1.14349 1.61165 1.94561 1.15095 1.61664 1.65896 1.20910 0.93080 1.00809 0.95791 1.20984 0.99621 0.95188 0.94398 1.19098 0.94031 0.95301 0.97597 1.24656 1.00985 0.96056 0.97130 1.86515 1.68699 1.40765 1.38404 0.85857 0.79494 0.78369 0.80191 1.16664 1.17108 1.16722 1.26861 1.02574 1.07914 1.10733 0.91076 0.91094 0.91037 0.91031 0.91029 0.91103 0.90452 0.90279 0.91319 0.91981 0.89493 0.91354 0.91245 0.82174 0.82171 0.82911 0.89707 0.76865 0.89807 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 1.02 8.65 101.05 0.87 1.89 16 2 Si 0.97 -3.40 13.35 -169.99 -2.27 -5.67 16 3 C -0.44 1.03 8.65 101.05 0.87 1.90 16 4 C -0.40 0.90 5.85 38.29 0.22 1.13 16 5 C -0.11 0.17 5.21 -25.30 -0.13 0.04 16 6 C -0.08 0.14 2.40 -88.69 -0.21 -0.07 16 7 C 0.06 -0.06 4.11 37.15 0.15 0.10 16 8 O -0.29 -0.17 9.25 -19.42 -0.18 -0.35 16 9 C 0.17 0.16 6.66 -39.22 -0.26 -0.10 16 10 C -0.15 -0.20 8.54 -39.43 -0.34 -0.53 16 11 C 0.00 0.00 6.85 -79.98 -0.55 -0.54 16 12 N 0.03 0.12 4.45 33.95 0.15 0.27 16 13 O -0.15 -0.79 18.44 -29.46 -0.54 -1.33 16 14 O -0.16 -0.85 18.45 -29.46 -0.54 -1.39 16 15 C -0.09 -0.04 9.55 -39.56 -0.38 -0.42 16 16 C -0.08 0.04 8.66 -39.61 -0.34 -0.30 16 17 C -0.06 -0.02 5.31 -104.47 -0.55 -0.57 16 18 C -0.08 0.11 2.37 36.01 0.09 0.19 16 19 O -0.54 0.41 12.86 -35.23 -0.45 -0.05 16 20 Si 0.94 -2.11 25.49 -169.99 -4.33 -6.45 16 21 H -0.24 0.38 6.73 56.52 0.38 0.76 16 22 H -0.25 0.49 7.11 56.52 0.40 0.89 16 23 H -0.24 0.41 7.11 56.52 0.40 0.81 16 24 C -0.40 1.07 5.30 38.80 0.21 1.28 16 25 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 26 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 27 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 28 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 29 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 30 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 31 H 0.08 -0.16 8.04 -51.93 -0.42 -0.58 16 32 H 0.08 -0.17 8.04 -51.93 -0.42 -0.59 16 33 H 0.07 -0.06 8.12 -51.93 -0.42 -0.48 16 34 H 0.06 -0.10 8.04 -51.93 -0.42 -0.52 16 35 H 0.09 -0.13 8.14 -51.93 -0.42 -0.55 16 36 H 0.07 -0.12 7.58 -51.93 -0.39 -0.51 16 37 H 0.07 -0.09 7.68 -51.93 -0.40 -0.49 16 38 H 0.16 0.04 5.85 -52.49 -0.31 -0.27 16 39 H 0.16 -0.18 7.61 -52.49 -0.40 -0.58 16 40 H 0.15 -0.39 4.89 -52.49 -0.26 -0.64 16 41 H 0.09 -0.21 7.83 -51.93 -0.41 -0.61 16 42 H 0.38 -1.94 8.74 45.56 0.40 -1.54 16 43 H 0.08 -0.24 8.03 -51.93 -0.42 -0.66 16 44 H 0.08 -0.24 8.06 -51.93 -0.42 -0.66 16 LS Contribution 365.77 15.07 5.51 5.51 Total: 0.00 -6.10 365.77 -9.00 -15.10 By element: Atomic # 1 Polarization: -3.63 SS G_CDS: -5.99 Total: -9.63 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -0.35 Total: 3.99 kcal Atomic # 7 Polarization: 0.12 SS G_CDS: 0.15 Total: 0.27 kcal Atomic # 8 Polarization: -1.41 SS G_CDS: -1.72 Total: -3.13 kcal Atomic # 14 Polarization: -5.52 SS G_CDS: -6.60 Total: -12.12 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -6.10 -9.00 -15.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_16525086_18051908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.722 kcal (2) G-P(sol) polarization free energy of solvation -6.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds