Wall clock time and date at job start Fri Mar 5 2021 23:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 C 1.52995 * 109.47643 * 190.93802 * 6 5 4 8 8 O 1.42901 * 109.47074 * 293.54788 * 7 6 5 9 9 C 1.35900 * 117.00200 * 179.97438 * 8 7 6 10 10 C 1.38716 * 120.05639 * 359.72293 * 9 8 7 11 11 C 1.38166 * 119.94609 * 179.79011 * 10 9 8 12 12 N 1.48004 * 119.97167 * 180.22737 * 11 10 9 13 13 O 1.21798 * 119.99871 * 180.25711 * 12 11 10 14 14 O 1.21800 * 120.00183 * 0.25657 * 12 11 10 15 15 C 1.38244 * 120.05328 * 0.48865 * 11 10 9 16 16 C 1.38288 * 120.11420 * 359.74005 * 15 11 10 17 17 C 1.38123 * 120.05188 * 0.02562 * 16 15 11 18 18 C 1.50700 * 120.02508 * 179.97438 * 17 16 15 19 19 O 1.42907 * 109.47217 * 105.02291 * 18 17 16 20 20 Si 1.86297 * 109.47235 * 345.02485 * 18 17 16 21 21 H 1.48501 * 109.47388 * 60.00100 * 20 18 17 22 22 H 1.48508 * 109.47214 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46934 * 299.99558 * 20 18 17 24 24 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 25 25 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 26 26 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 27 27 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 29 29 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 31 31 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 32 32 H 1.08999 * 111.05229 * 356.11516 * 4 2 1 33 33 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 34 34 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 35 35 H 1.09004 * 109.47418 * 70.93608 * 6 5 4 36 36 H 1.09007 * 109.46916 * 53.54343 * 7 6 5 37 37 H 1.09005 * 109.47687 * 173.54545 * 7 6 5 38 38 H 1.07999 * 120.02692 * 0.02562 * 10 9 8 39 39 H 1.08001 * 119.94349 * 179.72107 * 15 11 10 40 40 H 1.07997 * 119.97602 * 180.02562 * 16 15 11 41 41 H 1.09005 * 109.47445 * 225.02112 * 18 17 16 42 42 H 0.96695 * 114.00379 * 179.97438 * 19 18 17 43 43 H 1.08996 * 111.41269 * 283.05303 * 24 6 5 44 44 H 1.09006 * 111.49251 * 158.06559 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1417 -2.9771 -1.5067 8 8 5.3027 -3.5593 -0.9107 9 6 5.8104 -4.6706 -1.5059 10 6 5.2004 -5.1932 -2.6368 11 6 5.7211 -6.3206 -3.2426 12 7 5.0736 -6.8758 -4.4522 13 8 5.5294 -7.8723 -4.9839 14 8 4.0850 -6.3362 -4.9158 15 6 6.8431 -6.9335 -2.7168 16 6 7.4504 -6.4172 -1.5867 17 6 6.9366 -5.2876 -0.9802 18 6 7.5985 -4.7258 0.2516 19 8 8.3276 -3.5467 -0.0952 20 14 8.7664 -5.9919 0.9612 21 1 9.8028 -6.3295 -0.0473 22 1 9.4191 -5.4381 2.1747 23 1 8.0086 -7.2171 1.3217 24 6 2.5568 -1.0142 -1.4447 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.1907 2.2612 0.8899 29 1 3.6274 1.7027 -0.0005 30 1 2.1908 2.2612 -0.8900 31 1 3.2797 -0.4330 2.0151 32 1 1.7543 -1.3786 2.0840 33 1 4.1055 -2.5196 1.2701 34 1 2.5407 -3.0054 0.5873 35 1 4.5675 -1.0680 -0.6042 36 1 3.3305 -3.7052 -1.5088 37 1 4.3683 -2.6826 -2.5315 38 1 4.3214 -4.7172 -3.0456 39 1 7.2460 -7.8172 -3.1891 40 1 8.3271 -6.8975 -1.1780 41 1 6.8377 -4.4779 0.9919 42 1 8.7802 -3.1304 0.6510 43 1 1.8198 -1.7216 -1.8246 44 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_16525086_18051908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:05:09 Heat of formation + Delta-G solvation = -85.247401 kcal Electronic energy + Delta-G solvation = -25767.285469 eV Core-core repulsion = 22004.900565 eV Total energy + Delta-G solvation = -3762.384903 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.42137 -41.74076 -39.32652 -37.81504 -37.71305 -36.71668 -33.76523 -31.76249 -30.57575 -29.11872 -28.96366 -28.38532 -27.44875 -25.63020 -24.48970 -23.58227 -22.79789 -21.01376 -20.66193 -19.91493 -18.77094 -18.57263 -18.26341 -17.58832 -17.30059 -17.08855 -16.24861 -15.86922 -15.53872 -15.32265 -14.71589 -14.48118 -14.40651 -14.05888 -13.84607 -13.83133 -13.72207 -13.51753 -13.33997 -13.28706 -13.18334 -12.83912 -12.71761 -12.67768 -12.42306 -12.42167 -12.26647 -12.17175 -12.11032 -11.85160 -11.69288 -11.39683 -10.77350 -10.76260 -10.48266 -10.37388 -10.28232 -9.76614 -1.47972 -0.23473 0.07678 0.17333 1.06747 1.43863 1.50360 1.64555 1.87022 1.91199 1.98100 1.99936 2.04428 2.63118 3.09210 3.19641 3.36369 3.46582 3.70242 3.82878 3.84423 3.89376 4.00954 4.06085 4.28977 4.29924 4.46694 4.49426 4.55636 4.56766 4.67389 4.71853 4.79100 4.80660 4.83592 4.84309 4.84922 4.91469 5.10032 5.16378 5.21723 5.33334 5.47362 5.52124 5.59658 5.64040 5.97985 6.32785 6.75146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.457 4.457 2 Si 1.041 2.959 3 C -0.457 4.457 4 C -0.411 4.411 5 C -0.110 4.110 6 C -0.080 4.080 7 C 0.051 3.949 8 O -0.295 6.295 9 C 0.157 3.843 10 C -0.158 4.158 11 C -0.016 4.016 12 N 0.028 4.972 13 O -0.163 6.163 14 O -0.181 6.181 15 C -0.083 4.083 16 C -0.082 4.082 17 C -0.063 4.063 18 C -0.084 4.084 19 O -0.556 6.556 20 Si 0.975 3.025 21 H -0.250 1.250 22 H -0.250 1.250 23 H -0.251 1.251 24 C -0.405 4.405 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.165 0.835 39 H 0.175 0.825 40 H 0.176 0.824 41 H 0.094 0.906 42 H 0.401 0.599 43 H 0.086 0.914 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.159 3.133 6.351 7.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.565 4.565 2 Si 1.234 2.766 3 C -0.565 4.565 4 C -0.496 4.496 5 C -0.148 4.148 6 C -0.098 4.098 7 C -0.023 4.023 8 O -0.208 6.208 9 C 0.109 3.891 10 C -0.178 4.178 11 C -0.099 4.099 12 N 0.544 4.456 13 O -0.380 6.380 14 O -0.393 6.393 15 C -0.102 4.102 16 C -0.100 4.100 17 C -0.064 4.064 18 C -0.193 4.193 19 O -0.366 6.366 20 Si 0.797 3.203 21 H -0.174 1.174 22 H -0.173 1.173 23 H -0.174 1.174 24 C -0.489 4.489 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.182 0.818 39 H 0.193 0.807 40 H 0.192 0.808 41 H 0.112 0.888 42 H 0.252 0.748 43 H 0.105 0.895 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.810 2.820 6.865 7.639 hybrid contribution -0.506 0.162 -0.469 0.709 sum 1.304 2.983 6.396 7.177 Atomic orbital electron populations 1.26198 1.21188 1.04553 1.04534 0.79401 0.65671 0.65745 0.65772 1.26198 1.06706 1.18987 1.04575 1.26657 1.05638 1.06419 1.10905 1.21722 1.00322 0.98610 0.94148 1.21709 0.99153 0.94409 0.94557 1.23402 0.85163 0.95952 0.97830 1.86211 1.44739 1.37626 1.52228 1.18549 0.92652 0.87527 0.90380 1.21156 1.03225 0.96376 0.96993 1.20969 0.99490 0.99805 0.89667 1.43888 0.99935 0.99774 1.01993 1.94540 1.66657 1.14905 1.61915 1.94543 1.15997 1.61983 1.66826 1.21175 0.92236 1.00952 0.95807 1.21249 0.99980 0.94896 0.93838 1.19497 0.93686 0.95290 0.97967 1.24827 1.01633 0.96462 0.96377 1.86463 1.69011 1.41106 1.39983 0.85346 0.78330 0.77215 0.79458 1.17422 1.17347 1.17435 1.27000 1.02349 1.08200 1.11349 0.91098 0.91176 0.91152 0.91100 0.91201 0.91099 0.90542 0.90251 0.92249 0.91996 0.89735 0.90762 0.91146 0.81796 0.80744 0.80751 0.88848 0.74850 0.89477 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.21 8.65 113.37 0.98 3.19 16 2 Si 1.04 -7.57 13.35 68.60 0.92 -6.65 16 3 C -0.46 2.21 8.65 113.37 0.98 3.19 16 4 C -0.41 1.87 5.85 72.72 0.43 2.29 16 5 C -0.11 0.32 5.21 31.52 0.16 0.48 16 6 C -0.08 0.26 2.40 -9.54 -0.02 0.24 16 7 C 0.05 -0.07 4.11 71.98 0.30 0.22 16 8 O -0.30 -0.48 9.25 -92.42 -0.85 -1.33 16 9 C 0.16 0.37 6.66 22.51 0.15 0.52 16 10 C -0.16 -0.54 8.54 22.37 0.19 -0.35 16 11 C -0.02 -0.09 6.85 36.36 0.25 0.16 16 12 N 0.03 0.29 4.45 -46.51 -0.21 0.08 16 13 O -0.16 -1.92 18.44 18.89 0.35 -1.57 16 14 O -0.18 -2.28 18.45 18.89 0.35 -1.94 16 15 C -0.08 -0.07 9.55 22.28 0.21 0.15 16 16 C -0.08 0.13 8.66 22.25 0.19 0.32 16 17 C -0.06 -0.02 5.31 -19.77 -0.10 -0.13 16 18 C -0.08 0.29 2.37 71.24 0.17 0.46 16 19 O -0.56 1.16 12.86 -148.98 -1.92 -0.75 16 20 Si 0.98 -5.50 25.49 68.60 1.75 -3.75 16 21 H -0.25 1.12 6.73 99.48 0.67 1.79 16 22 H -0.25 1.30 7.11 99.48 0.71 2.01 16 23 H -0.25 1.13 7.11 99.48 0.71 1.84 16 24 C -0.40 2.26 5.30 73.05 0.39 2.64 16 25 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 26 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 27 H 0.07 -0.31 7.96 -2.38 -0.02 -0.33 16 28 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 29 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 30 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 31 H 0.08 -0.32 8.04 -2.39 -0.02 -0.34 16 32 H 0.08 -0.35 8.04 -2.39 -0.02 -0.37 16 33 H 0.06 -0.06 8.12 -2.39 -0.02 -0.08 16 34 H 0.06 -0.18 8.04 -2.39 -0.02 -0.20 16 35 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 36 H 0.07 -0.22 7.58 -2.38 -0.02 -0.23 16 37 H 0.07 -0.13 7.68 -2.38 -0.02 -0.15 16 38 H 0.16 0.28 5.85 -2.91 -0.02 0.27 16 39 H 0.18 -0.45 7.61 -2.91 -0.02 -0.47 16 40 H 0.18 -1.12 4.89 -2.91 -0.01 -1.13 16 41 H 0.09 -0.50 7.83 -2.38 -0.02 -0.52 16 42 H 0.40 -4.35 8.74 -74.06 -0.65 -4.99 16 43 H 0.09 -0.52 8.03 -2.39 -0.02 -0.54 16 44 H 0.09 -0.52 8.06 -2.38 -0.02 -0.54 16 Total: 0.00 -14.20 365.77 5.73 -8.47 By element: Atomic # 1 Polarization: -7.02 SS G_CDS: 1.08 Total: -5.94 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: 4.27 Total: 13.39 kcal Atomic # 7 Polarization: 0.29 SS G_CDS: -0.21 Total: 0.08 kcal Atomic # 8 Polarization: -3.52 SS G_CDS: -2.07 Total: -5.60 kcal Atomic # 14 Polarization: -13.07 SS G_CDS: 2.66 Total: -10.40 kcal Total: -14.20 5.73 -8.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_16525086_18051908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.781 kcal (2) G-P(sol) polarization free energy of solvation -14.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds