Wall clock time and date at job start Fri Mar 5 2021 23:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 C 1.52995 * 109.47643 * 190.93802 * 6 5 4 8 8 O 1.42901 * 109.47074 * 293.54788 * 7 6 5 9 9 C 1.35900 * 117.00200 * 179.97438 * 8 7 6 10 10 C 1.38596 * 120.02194 * 359.72505 * 9 8 7 11 11 C 1.38762 * 119.87810 * 179.72235 * 10 9 8 12 12 N 1.40183 * 120.04078 * 180.29355 * 11 10 9 13 13 C 1.35225 * 126.05864 * 184.99267 * 12 11 10 14 14 C 1.35315 * 107.71784 * 179.84424 * 13 12 11 15 15 C 1.39929 * 107.92757 * 0.41874 * 14 13 12 16 16 N 1.30873 * 108.24148 * 359.74010 * 15 14 13 17 17 C 1.38851 * 119.92633 * 0.57406 * 11 10 9 18 18 C 1.38177 * 120.03725 * 359.69971 * 17 11 10 19 19 C 1.38164 * 120.12462 * 359.97438 * 18 17 11 20 20 C 1.50701 * 119.95983 * 179.97438 * 19 18 17 21 21 O 1.42908 * 109.46439 * 105.02743 * 20 19 18 22 22 Si 1.86296 * 109.47537 * 345.03146 * 20 19 18 23 23 H 1.48499 * 109.47266 * 59.99408 * 22 20 19 24 24 H 1.48502 * 109.47124 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46575 * 299.99454 * 22 20 19 26 26 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 27 27 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 28 28 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 29 29 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 31 31 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 33 33 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 34 34 H 1.08999 * 111.05229 * 356.11516 * 4 2 1 35 35 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 36 36 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 37 37 H 1.09004 * 109.47418 * 70.93608 * 6 5 4 38 38 H 1.09007 * 109.46916 * 53.54343 * 7 6 5 39 39 H 1.09005 * 109.47687 * 173.54545 * 7 6 5 40 40 H 1.07997 * 120.05824 * 359.97438 * 10 9 8 41 41 H 1.08003 * 126.13800 * 359.97438 * 13 12 11 42 42 H 1.08000 * 126.03852 * 180.16394 * 14 13 12 43 43 H 1.07998 * 125.87702 * 179.71477 * 15 14 13 44 44 H 1.07993 * 119.98571 * 179.67728 * 17 11 10 45 45 H 1.08000 * 119.93775 * 180.02562 * 18 17 11 46 46 H 1.09001 * 109.47170 * 225.02395 * 20 19 18 47 47 H 0.96706 * 113.99519 * 179.97438 * 21 20 19 48 48 H 1.08996 * 111.41269 * 283.05303 * 26 6 5 49 49 H 1.09006 * 111.49251 * 158.06559 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1417 -2.9771 -1.5067 8 8 5.3027 -3.5593 -0.9107 9 6 5.8104 -4.6706 -1.5059 10 6 5.2004 -5.1922 -2.6358 11 6 5.7247 -6.3236 -3.2445 12 7 5.1140 -6.8504 -4.3911 13 6 5.4618 -7.9936 -5.0242 14 6 4.6295 -8.1494 -6.0797 15 6 3.7497 -7.0614 -6.0987 16 7 4.0392 -6.2827 -5.0874 17 6 6.8516 -6.9367 -2.7133 18 6 7.4539 -6.4173 -1.5834 19 6 6.9373 -5.2869 -0.9797 20 6 7.5968 -4.7238 0.2528 21 8 8.3261 -3.5448 -0.0938 22 14 8.7639 -5.9889 0.9656 23 1 9.8022 -6.3270 -0.0408 24 1 9.4142 -5.4337 2.1798 25 1 8.0059 -7.2141 1.3258 26 6 2.5568 -1.0142 -1.4447 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 2.1907 2.2612 0.8899 31 1 3.6274 1.7027 -0.0005 32 1 2.1908 2.2612 -0.8900 33 1 3.2797 -0.4330 2.0151 34 1 1.7543 -1.3786 2.0840 35 1 4.1055 -2.5196 1.2701 36 1 2.5407 -3.0054 0.5873 37 1 4.5675 -1.0680 -0.6042 38 1 3.3305 -3.7052 -1.5088 39 1 4.3683 -2.6826 -2.5315 40 1 4.3210 -4.7165 -3.0441 41 1 6.2593 -8.6632 -4.7375 42 1 4.6445 -8.9667 -6.7855 43 1 2.9669 -6.8931 -6.8233 44 1 7.2574 -7.8203 -3.1832 45 1 8.3305 -6.8952 -1.1718 46 1 6.8346 -4.4756 0.9915 47 1 8.7772 -3.1276 0.6529 48 1 1.8198 -1.7216 -1.8246 49 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_7_16772184_18051908.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:15:06 Heat of formation + Delta-G solvation = -6.148484 kcal Electronic energy + Delta-G solvation = -28151.731562 eV Core-core repulsion = 24397.187599 eV Total energy + Delta-G solvation = -3754.543963 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.52066 -41.24370 -39.02552 -37.57018 -36.66630 -34.50417 -31.88920 -31.13689 -30.72563 -30.36986 -29.25225 -28.52648 -27.34054 -26.46437 -24.40367 -23.72218 -23.26517 -21.74488 -21.50862 -20.65325 -19.69284 -18.42409 -17.75341 -17.33302 -16.91646 -16.87577 -16.21410 -16.05345 -15.78275 -15.55366 -15.27134 -15.08487 -14.72106 -14.50005 -14.24163 -14.13059 -13.99056 -13.93780 -13.74613 -13.66596 -13.62307 -13.50881 -13.31483 -13.18120 -12.86171 -12.69226 -12.36136 -12.23934 -12.10976 -12.07618 -11.82217 -11.68752 -11.56943 -11.39996 -11.05713 -10.90432 -10.57374 -10.37159 -10.22854 -10.13917 -9.52234 -8.94099 -0.26381 0.28455 1.14391 1.15281 1.35719 1.42968 1.49343 1.54948 1.81874 1.84050 1.86331 1.89133 2.20351 2.53219 2.59692 3.36996 3.54371 3.68762 3.76596 3.81072 3.94579 3.96571 4.00337 4.07847 4.19435 4.28510 4.33469 4.41252 4.52330 4.55102 4.56059 4.64787 4.66708 4.67685 4.68503 4.70312 4.71547 4.72988 4.75289 4.95807 5.03761 5.06420 5.13729 5.16773 5.25038 5.32010 5.39543 5.42743 5.47823 5.50135 5.52419 5.63292 6.10044 6.38095 6.63296 6.68809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.442 4.442 2 Si 0.968 3.032 3 C -0.442 4.442 4 C -0.398 4.398 5 C -0.109 4.109 6 C -0.081 4.081 7 C 0.063 3.937 8 O -0.296 6.296 9 C 0.186 3.814 10 C -0.215 4.215 11 C 0.207 3.793 12 N -0.326 5.326 13 C 0.055 3.945 14 C -0.259 4.259 15 C 0.059 3.941 16 N -0.291 5.291 17 C -0.176 4.176 18 C -0.057 4.057 19 C -0.120 4.120 20 C -0.067 4.067 21 O -0.540 6.540 22 Si 0.941 3.059 23 H -0.247 1.247 24 H -0.254 1.254 25 H -0.247 1.247 26 C -0.394 4.394 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.147 0.853 41 H 0.180 0.820 42 H 0.156 0.844 43 H 0.192 0.808 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.077 0.923 47 H 0.377 0.623 48 H 0.081 0.919 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.382 -0.827 1.088 1.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.550 4.550 2 Si 1.166 2.834 3 C -0.550 4.550 4 C -0.484 4.484 5 C -0.146 4.146 6 C -0.100 4.100 7 C -0.012 4.012 8 O -0.208 6.208 9 C 0.139 3.861 10 C -0.235 4.235 11 C 0.115 3.885 12 N -0.102 5.102 13 C -0.087 4.087 14 C -0.288 4.288 15 C -0.128 4.128 16 N -0.110 5.110 17 C -0.197 4.197 18 C -0.075 4.075 19 C -0.122 4.122 20 C -0.178 4.178 21 O -0.346 6.346 22 Si 0.763 3.237 23 H -0.171 1.171 24 H -0.178 1.178 25 H -0.171 1.171 26 C -0.480 4.480 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.164 0.836 41 H 0.197 0.803 42 H 0.174 0.826 43 H 0.208 0.792 44 H 0.154 0.846 45 H 0.157 0.843 46 H 0.095 0.905 47 H 0.224 0.776 48 H 0.100 0.900 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.289 -0.360 1.678 1.740 hybrid contribution 0.029 -0.564 -0.519 0.767 sum -0.260 -0.924 1.159 1.505 Atomic orbital electron populations 1.26013 1.19947 1.04586 1.04492 0.80496 0.67417 0.67575 0.67907 1.26011 1.06694 1.17823 1.04509 1.26499 1.05496 1.06328 1.10098 1.21709 1.00606 0.98132 0.94186 1.21683 0.98689 0.95027 0.94554 1.23084 0.85702 0.95123 0.97306 1.86156 1.43918 1.38437 1.52338 1.18435 0.91599 0.86058 0.90049 1.20917 1.04620 0.99347 0.98659 1.17233 0.92476 0.93938 0.84898 1.45915 1.25587 1.17791 1.20893 1.22698 1.01140 0.90137 0.94700 1.21687 1.00726 1.03496 1.02850 1.24162 0.99603 0.92737 0.96345 1.77472 1.02937 1.21952 1.08592 1.20585 0.96726 1.03162 0.99260 1.20693 0.98335 0.94475 0.93994 1.18631 0.96289 0.97490 0.99776 1.24518 1.00259 0.95206 0.97785 1.86543 1.68797 1.41170 1.38085 0.85877 0.79522 0.78650 0.79609 1.17071 1.17800 1.17074 1.26847 1.02677 1.07841 1.10600 0.91136 0.91131 0.91064 0.91075 0.91004 0.91158 0.90498 0.90374 0.91278 0.92064 0.89644 0.91778 0.91639 0.83580 0.80295 0.82587 0.79156 0.84625 0.84322 0.90550 0.77563 0.89971 0.89970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.67 8.65 101.05 0.87 1.54 16 2 Si 0.97 -2.40 13.35 -169.99 -2.27 -4.67 16 3 C -0.44 0.65 8.65 101.05 0.87 1.52 16 4 C -0.40 0.45 5.85 38.29 0.22 0.68 16 5 C -0.11 0.01 5.21 -25.30 -0.13 -0.12 16 6 C -0.08 0.00 2.40 -88.69 -0.21 -0.21 16 7 C 0.06 0.08 4.11 37.15 0.15 0.23 16 8 O -0.30 -0.89 9.24 -19.42 -0.18 -1.07 16 9 C 0.19 0.64 6.66 -39.24 -0.26 0.37 16 10 C -0.21 -0.77 8.65 -39.26 -0.34 -1.11 16 11 C 0.21 0.68 6.68 -83.62 -0.56 0.12 16 12 N -0.33 -1.13 3.80 -10.71 -0.04 -1.17 16 13 C 0.06 0.06 10.79 -17.10 -0.18 -0.13 16 14 C -0.26 -0.17 10.81 -39.99 -0.43 -0.60 16 15 C 0.06 0.10 12.03 -17.33 -0.21 -0.11 16 16 N -0.29 -1.25 11.88 30.64 0.36 -0.88 16 17 C -0.18 -0.24 9.45 -39.38 -0.37 -0.61 16 18 C -0.06 -0.08 8.65 -39.63 -0.34 -0.42 16 19 C -0.12 -0.31 5.31 -104.44 -0.55 -0.87 16 20 C -0.07 -0.06 2.37 36.01 0.09 0.03 16 21 O -0.54 -0.78 12.86 -35.23 -0.45 -1.23 16 22 Si 0.94 -0.34 25.49 -169.99 -4.33 -4.68 16 23 H -0.25 -0.07 6.73 56.52 0.38 0.31 16 24 H -0.25 0.06 7.11 56.52 0.40 0.46 16 25 H -0.25 -0.03 7.11 56.52 0.40 0.37 16 26 C -0.39 0.52 5.30 38.80 0.21 0.73 16 27 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 28 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 29 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 30 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 31 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 32 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 33 H 0.08 -0.08 8.04 -51.93 -0.42 -0.50 16 34 H 0.08 -0.09 8.04 -51.93 -0.42 -0.51 16 35 H 0.07 0.06 8.12 -51.93 -0.42 -0.37 16 36 H 0.06 0.00 8.04 -51.93 -0.42 -0.42 16 37 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 38 H 0.06 0.05 7.58 -51.93 -0.39 -0.34 16 39 H 0.07 0.09 7.67 -51.93 -0.40 -0.31 16 40 H 0.15 0.51 5.94 -52.49 -0.31 0.20 16 41 H 0.18 -0.43 7.06 -52.48 -0.37 -0.80 16 42 H 0.16 -0.28 8.06 -52.49 -0.42 -0.70 16 43 H 0.19 -0.31 8.06 -52.49 -0.42 -0.73 16 44 H 0.14 -0.19 6.75 -52.49 -0.35 -0.54 16 45 H 0.14 -0.07 4.88 -52.49 -0.26 -0.33 16 46 H 0.08 0.00 7.82 -51.93 -0.41 -0.40 16 47 H 0.38 -1.12 8.74 45.56 0.40 -0.73 16 48 H 0.08 -0.11 8.03 -51.93 -0.42 -0.53 16 49 H 0.08 -0.12 8.06 -51.93 -0.42 -0.54 16 LS Contribution 395.93 15.07 5.97 5.97 Total: 0.00 -7.28 395.93 -9.30 -16.57 By element: Atomic # 1 Polarization: -2.71 SS G_CDS: -7.17 Total: -9.88 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -1.18 Total: 1.05 kcal Atomic # 7 Polarization: -2.38 SS G_CDS: 0.32 Total: -2.06 kcal Atomic # 8 Polarization: -1.67 SS G_CDS: -0.63 Total: -2.31 kcal Atomic # 14 Polarization: -2.75 SS G_CDS: -6.60 Total: -9.35 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -7.28 -9.30 -16.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_16772184_18051908.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.426 kcal (2) G-P(sol) polarization free energy of solvation -7.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds