Wall clock time and date at job start Fri Mar 5 2021 23:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 C 1.52995 * 109.47643 * 190.93802 * 6 5 4 8 8 O 1.42901 * 109.47074 * 293.54788 * 7 6 5 9 9 C 1.35900 * 117.00200 * 179.97438 * 8 7 6 10 10 C 1.38596 * 120.02194 * 359.72505 * 9 8 7 11 11 C 1.38762 * 119.87810 * 179.72235 * 10 9 8 12 12 N 1.40183 * 120.04078 * 180.29355 * 11 10 9 13 13 C 1.35225 * 126.05864 * 184.99267 * 12 11 10 14 14 C 1.35315 * 107.71784 * 179.84424 * 13 12 11 15 15 C 1.39929 * 107.92757 * 0.41874 * 14 13 12 16 16 N 1.30873 * 108.24148 * 359.74010 * 15 14 13 17 17 C 1.38851 * 119.92633 * 0.57406 * 11 10 9 18 18 C 1.38177 * 120.03725 * 359.69971 * 17 11 10 19 19 C 1.38164 * 120.12462 * 359.97438 * 18 17 11 20 20 C 1.50701 * 119.95983 * 179.97438 * 19 18 17 21 21 O 1.42908 * 109.46439 * 105.02743 * 20 19 18 22 22 Si 1.86296 * 109.47537 * 345.03146 * 20 19 18 23 23 H 1.48499 * 109.47266 * 59.99408 * 22 20 19 24 24 H 1.48502 * 109.47124 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46575 * 299.99454 * 22 20 19 26 26 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 27 27 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 28 28 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 29 29 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 31 31 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 33 33 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 34 34 H 1.08999 * 111.05229 * 356.11516 * 4 2 1 35 35 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 36 36 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 37 37 H 1.09004 * 109.47418 * 70.93608 * 6 5 4 38 38 H 1.09007 * 109.46916 * 53.54343 * 7 6 5 39 39 H 1.09005 * 109.47687 * 173.54545 * 7 6 5 40 40 H 1.07997 * 120.05824 * 359.97438 * 10 9 8 41 41 H 1.08003 * 126.13800 * 359.97438 * 13 12 11 42 42 H 1.08000 * 126.03852 * 180.16394 * 14 13 12 43 43 H 1.07998 * 125.87702 * 179.71477 * 15 14 13 44 44 H 1.07993 * 119.98571 * 179.67728 * 17 11 10 45 45 H 1.08000 * 119.93775 * 180.02562 * 18 17 11 46 46 H 1.09001 * 109.47170 * 225.02395 * 20 19 18 47 47 H 0.96706 * 113.99519 * 179.97438 * 21 20 19 48 48 H 1.08996 * 111.41269 * 283.05303 * 26 6 5 49 49 H 1.09006 * 111.49251 * 158.06559 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1417 -2.9771 -1.5067 8 8 5.3027 -3.5593 -0.9107 9 6 5.8104 -4.6706 -1.5059 10 6 5.2004 -5.1922 -2.6358 11 6 5.7247 -6.3236 -3.2445 12 7 5.1140 -6.8504 -4.3911 13 6 5.4618 -7.9936 -5.0242 14 6 4.6295 -8.1494 -6.0797 15 6 3.7497 -7.0614 -6.0987 16 7 4.0392 -6.2827 -5.0874 17 6 6.8516 -6.9367 -2.7133 18 6 7.4539 -6.4173 -1.5834 19 6 6.9373 -5.2869 -0.9797 20 6 7.5968 -4.7238 0.2528 21 8 8.3261 -3.5448 -0.0938 22 14 8.7639 -5.9889 0.9656 23 1 9.8022 -6.3270 -0.0408 24 1 9.4142 -5.4337 2.1798 25 1 8.0059 -7.2141 1.3258 26 6 2.5568 -1.0142 -1.4447 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 2.1907 2.2612 0.8899 31 1 3.6274 1.7027 -0.0005 32 1 2.1908 2.2612 -0.8900 33 1 3.2797 -0.4330 2.0151 34 1 1.7543 -1.3786 2.0840 35 1 4.1055 -2.5196 1.2701 36 1 2.5407 -3.0054 0.5873 37 1 4.5675 -1.0680 -0.6042 38 1 3.3305 -3.7052 -1.5088 39 1 4.3683 -2.6826 -2.5315 40 1 4.3210 -4.7165 -3.0441 41 1 6.2593 -8.6632 -4.7375 42 1 4.6445 -8.9667 -6.7855 43 1 2.9669 -6.8931 -6.8233 44 1 7.2574 -7.8203 -3.1832 45 1 8.3305 -6.8952 -1.1718 46 1 6.8346 -4.4756 0.9915 47 1 8.7772 -3.1276 0.6529 48 1 1.8198 -1.7216 -1.8246 49 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_16772184_18051908.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:15:05 Heat of formation + Delta-G solvation = 1.497658 kcal Electronic energy + Delta-G solvation = -28151.400001 eV Core-core repulsion = 24397.187599 eV Total energy + Delta-G solvation = -3754.212401 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.163 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.61117 -41.37293 -39.13377 -37.63442 -36.70538 -34.60696 -32.01065 -31.20227 -30.81102 -30.39870 -29.12857 -28.39342 -27.37400 -26.54786 -24.42740 -23.79296 -23.34837 -21.83815 -21.59372 -20.68575 -19.79512 -18.47487 -17.85982 -17.43727 -17.01252 -16.99697 -16.32458 -16.08624 -15.82276 -15.59457 -15.31420 -15.15841 -14.74140 -14.50394 -14.25503 -14.17997 -13.89159 -13.81914 -13.77798 -13.68634 -13.56671 -13.44550 -13.23039 -13.17253 -12.91683 -12.68373 -12.38865 -12.25131 -12.16875 -12.07536 -11.86645 -11.73087 -11.63682 -11.42618 -11.17999 -10.78316 -10.49080 -10.29634 -10.26173 -10.22963 -9.67974 -9.06286 -0.39197 0.14417 1.04696 1.16198 1.28084 1.47595 1.53921 1.65993 1.77963 1.90220 1.98497 2.01306 2.11901 2.46182 2.62204 3.30181 3.52349 3.61076 3.71318 3.79293 3.89539 3.94992 3.98718 4.02393 4.13213 4.20858 4.25067 4.33834 4.47158 4.50473 4.54268 4.63277 4.65796 4.67483 4.71677 4.80439 4.83004 4.83747 4.84593 4.93121 4.99025 5.05986 5.07744 5.14622 5.19320 5.31362 5.36364 5.46738 5.50709 5.58533 5.60629 5.63224 6.03045 6.22948 6.54259 6.84292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.043 2.957 3 C -0.455 4.455 4 C -0.411 4.411 5 C -0.109 4.109 6 C -0.080 4.080 7 C 0.062 3.938 8 O -0.306 6.306 9 C 0.169 3.831 10 C -0.229 4.229 11 C 0.191 3.809 12 N -0.340 5.340 13 C 0.049 3.951 14 C -0.264 4.264 15 C 0.054 3.946 16 N -0.338 5.338 17 C -0.172 4.172 18 C -0.059 4.059 19 C -0.136 4.136 20 C -0.077 4.077 21 O -0.561 6.561 22 Si 0.983 3.017 23 H -0.252 1.252 24 H -0.255 1.255 25 H -0.253 1.253 26 C -0.407 4.407 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.136 0.864 41 H 0.212 0.788 42 H 0.182 0.818 43 H 0.215 0.785 44 H 0.166 0.834 45 H 0.160 0.840 46 H 0.077 0.923 47 H 0.394 0.606 48 H 0.082 0.918 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.143 -1.643 1.068 1.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.236 2.764 3 C -0.563 4.563 4 C -0.495 4.495 5 C -0.146 4.146 6 C -0.098 4.098 7 C -0.013 4.013 8 O -0.219 6.219 9 C 0.122 3.878 10 C -0.250 4.250 11 C 0.098 3.902 12 N -0.116 5.116 13 C -0.092 4.092 14 C -0.292 4.292 15 C -0.133 4.133 16 N -0.157 5.157 17 C -0.192 4.192 18 C -0.077 4.077 19 C -0.137 4.137 20 C -0.186 4.186 21 O -0.369 6.369 22 Si 0.804 3.196 23 H -0.176 1.176 24 H -0.179 1.179 25 H -0.177 1.177 26 C -0.491 4.491 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.154 0.846 41 H 0.229 0.771 42 H 0.199 0.801 43 H 0.232 0.768 44 H 0.183 0.817 45 H 0.177 0.823 46 H 0.095 0.905 47 H 0.244 0.756 48 H 0.101 0.899 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.238 -1.172 1.659 2.045 hybrid contribution -0.146 -0.325 -0.558 0.662 sum 0.092 -1.496 1.101 1.860 Atomic orbital electron populations 1.26155 1.20784 1.04567 1.04691 0.79395 0.65901 0.65764 0.65353 1.26163 1.06650 1.18722 1.04720 1.26670 1.05639 1.06272 1.10947 1.21694 1.00176 0.98654 0.94104 1.21710 0.99086 0.94376 0.94654 1.23167 0.85302 0.95570 0.97227 1.86138 1.44444 1.38596 1.52701 1.18656 0.92306 0.86450 0.90405 1.20925 1.04749 1.00098 0.99193 1.17502 0.93260 0.94170 0.85294 1.46043 1.25812 1.18608 1.21173 1.23369 1.01782 0.89642 0.94395 1.22076 1.00138 1.03755 1.03189 1.24727 1.00013 0.92627 0.95907 1.77428 1.04384 1.23770 1.10068 1.20927 0.95713 1.03638 0.98932 1.20996 0.98753 0.94057 0.93891 1.19020 0.96191 0.97989 1.00511 1.24762 1.00971 0.95773 0.97114 1.86489 1.69107 1.41695 1.39655 0.85276 0.78147 0.77262 0.78870 1.17599 1.17855 1.17657 1.27050 1.02292 1.08178 1.11547 0.90978 0.90903 0.91219 0.90840 0.91292 0.90984 0.90458 0.90096 0.92525 0.92288 0.89987 0.91898 0.92344 0.84643 0.77107 0.80112 0.76830 0.81676 0.82300 0.90468 0.75610 0.89904 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.47 8.65 113.37 0.98 2.45 16 2 Si 1.04 -5.02 13.35 68.60 0.92 -4.10 16 3 C -0.45 1.38 8.65 113.37 0.98 2.36 16 4 C -0.41 0.69 5.85 72.72 0.43 1.11 16 5 C -0.11 -0.16 5.21 31.52 0.16 0.01 16 6 C -0.08 -0.14 2.40 -9.54 -0.02 -0.16 16 7 C 0.06 0.32 4.11 71.98 0.30 0.62 16 8 O -0.31 -2.66 9.24 -92.42 -0.85 -3.51 16 9 C 0.17 1.55 6.66 22.49 0.15 1.70 16 10 C -0.23 -2.23 8.65 22.48 0.19 -2.03 16 11 C 0.19 1.49 6.68 38.08 0.25 1.75 16 12 N -0.34 -2.66 3.80 -187.81 -0.71 -3.37 16 13 C 0.05 0.07 10.79 83.50 0.90 0.97 16 14 C -0.26 -0.15 10.81 22.00 0.24 0.09 16 15 C 0.05 0.20 12.03 85.25 1.03 1.22 16 16 N -0.34 -3.41 11.88 -56.97 -0.68 -4.08 16 17 C -0.17 -0.44 9.45 22.40 0.21 -0.23 16 18 C -0.06 -0.17 8.65 22.24 0.19 0.03 16 19 C -0.14 -0.86 5.31 -19.75 -0.10 -0.96 16 20 C -0.08 -0.20 2.37 71.24 0.17 -0.03 16 21 O -0.56 -2.10 12.86 -148.98 -1.92 -4.01 16 22 Si 0.98 -1.25 25.49 68.60 1.75 0.50 16 23 H -0.25 0.14 6.73 99.48 0.67 0.81 16 24 H -0.25 0.34 7.11 99.48 0.71 1.04 16 25 H -0.25 0.13 7.11 99.48 0.71 0.83 16 26 C -0.41 0.66 5.30 73.05 0.39 1.04 16 27 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 28 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 29 H 0.07 -0.18 7.96 -2.38 -0.02 -0.20 16 30 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 31 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 32 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 33 H 0.08 -0.12 8.04 -2.39 -0.02 -0.14 16 34 H 0.08 -0.17 8.04 -2.39 -0.02 -0.19 16 35 H 0.06 0.21 8.12 -2.39 -0.02 0.19 16 36 H 0.06 0.10 8.04 -2.39 -0.02 0.08 16 37 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.06 0.30 7.58 -2.38 -0.02 0.28 16 39 H 0.06 0.35 7.67 -2.38 -0.02 0.33 16 40 H 0.14 1.45 5.94 -2.91 -0.02 1.44 16 41 H 0.21 -1.43 7.06 -2.91 -0.02 -1.45 16 42 H 0.18 -0.97 8.06 -2.91 -0.02 -0.99 16 43 H 0.22 -0.68 8.06 -2.91 -0.02 -0.70 16 44 H 0.17 -0.74 6.75 -2.91 -0.02 -0.75 16 45 H 0.16 -0.31 4.88 -2.91 -0.01 -0.33 16 46 H 0.08 0.11 7.82 -2.39 -0.02 0.10 16 47 H 0.39 -2.13 8.74 -74.05 -0.65 -2.78 16 48 H 0.08 -0.14 8.03 -2.39 -0.02 -0.16 16 49 H 0.08 -0.18 8.06 -2.38 -0.02 -0.20 16 Total: 0.00 -18.43 395.93 5.96 -12.47 By element: Atomic # 1 Polarization: -4.84 SS G_CDS: 1.01 Total: -3.82 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 6.44 Total: 9.94 kcal Atomic # 7 Polarization: -6.07 SS G_CDS: -1.39 Total: -7.46 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -2.77 Total: -7.53 kcal Atomic # 14 Polarization: -6.27 SS G_CDS: 2.66 Total: -3.60 kcal Total: -18.43 5.96 -12.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_16772184_18051908.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.963 kcal (2) G-P(sol) polarization free energy of solvation -18.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds