Wall clock time and date at job start Fri Mar 5 2021 23:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38319 * 119.97900 * 2 1 4 4 Br 1.89095 * 119.95562 * 359.97156 * 3 2 1 5 5 C 1.38368 * 120.08922 * 179.97438 * 3 2 1 6 6 C 1.38122 * 120.04732 * 359.97438 * 5 3 2 7 7 C 1.38748 * 119.95046 * 359.97438 * 6 5 3 8 8 O 1.35924 * 120.04188 * 179.97438 * 7 6 5 9 9 C 1.42900 * 116.99624 * 0.02562 * 8 7 6 10 10 C 1.53005 * 109.46573 * 179.97438 * 9 8 7 11 11 C 1.53574 * 109.12459 * 66.45705 * 10 9 8 12 12 C 1.55913 * 109.50764 * 169.52122 * 11 10 9 13 13 Si 1.89659 * 99.33494 * 319.37648 * 12 11 10 14 14 C 1.86294 * 111.45900 * 138.35773 * 13 12 11 15 15 C 1.86303 * 111.45620 * 263.30489 * 13 12 11 16 16 C 1.55353 * 109.09270 * 188.23355 * 10 9 8 17 17 C 1.38171 * 119.97400 * 180.20336 * 2 1 3 18 18 C 1.50696 * 120.02232 * 0.05242 * 17 2 1 19 19 O 1.42908 * 109.47091 * 236.22980 * 18 17 2 20 20 Si 1.86299 * 109.47389 * 116.23259 * 18 17 2 21 21 H 1.48493 * 109.47265 * 53.94800 * 20 18 17 22 22 H 1.48500 * 109.47476 * 173.95273 * 20 18 17 23 23 H 1.48500 * 109.47076 * 293.95214 * 20 18 17 24 24 H 1.09004 * 109.46708 * 95.14983 * 1 2 3 25 25 H 1.08992 * 109.47342 * 215.15244 * 1 2 3 26 26 H 1.09004 * 109.46977 * 335.15492 * 1 2 3 27 27 H 1.08004 * 119.97490 * 179.97438 * 5 3 2 28 28 H 1.07990 * 120.02168 * 179.97438 * 6 5 3 29 29 H 1.08989 * 109.47486 * 60.00189 * 9 8 7 30 30 H 1.08997 * 109.47464 * 299.99330 * 9 8 7 31 31 H 1.09002 * 109.01976 * 307.35216 * 10 9 8 32 32 H 1.08998 * 109.47477 * 49.48993 * 11 10 9 33 33 H 1.09002 * 109.46780 * 289.54274 * 11 10 9 34 34 H 1.09000 * 111.42678 * 201.84740 * 12 11 10 35 35 H 1.09000 * 111.42629 * 76.90102 * 12 11 10 36 36 H 1.09001 * 109.46964 * 185.06185 * 14 13 12 37 37 H 1.09005 * 109.47224 * 65.06586 * 14 13 12 38 38 H 1.08999 * 109.47326 * 305.06238 * 14 13 12 39 39 H 1.09001 * 109.46796 * 294.92978 * 15 13 12 40 40 H 1.08998 * 109.47448 * 54.93295 * 15 13 12 41 41 H 1.08994 * 109.46953 * 174.93489 * 15 13 12 42 42 H 1.08997 * 111.07225 * 92.91311 * 16 10 9 43 43 H 1.09006 * 111.09591 * 328.90013 * 16 10 9 44 44 H 1.08998 * 109.47372 * 356.22907 * 18 17 2 45 45 H 0.96697 * 113.99796 * 300.00205 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1981 0.0000 4 35 1.2508 2.8347 -0.0008 5 6 3.5819 1.2008 0.0005 6 6 4.2758 0.0065 0.0016 7 6 3.5843 -1.1964 0.0027 8 8 4.2653 -2.3727 0.0032 9 6 5.6922 -2.2962 0.0032 10 6 6.2786 -3.7094 0.0045 11 6 5.9362 -4.3975 -1.3251 12 6 6.7443 -5.7251 -1.4476 13 14 8.4082 -5.1377 -0.7523 14 6 9.1638 -6.4131 0.3760 15 6 9.5855 -4.6595 -2.1147 16 6 7.8154 -3.6217 0.2147 17 6 2.1973 -1.1969 -0.0042 18 6 1.4438 -2.5019 -0.0101 19 8 1.8533 -3.2934 1.1071 20 14 1.8068 -3.4217 -1.5890 21 1 3.2758 -3.5628 -1.7531 22 1 1.1834 -4.7683 -1.5320 23 1 1.2504 -2.6670 -2.7406 24 1 -0.3633 -0.0922 -1.0236 25 1 -0.3633 -0.8402 0.5916 26 1 -0.3633 0.9326 0.4318 27 1 4.1197 2.1374 0.0001 28 1 5.3557 0.0091 0.0016 29 1 6.0275 -1.7633 0.8928 30 1 6.0276 -1.7642 -0.8871 31 1 5.8373 -4.2764 0.8241 32 1 6.1943 -3.7372 -2.1530 33 1 4.8690 -4.6175 -1.3560 34 1 6.8362 -6.0409 -2.4868 35 1 6.3113 -6.5132 -0.8315 36 1 10.0702 -6.0084 0.8263 37 1 9.4110 -7.3058 -0.1986 38 1 8.4525 -6.6713 1.1604 39 1 9.8354 -5.5411 -2.7050 40 1 9.1155 -3.9139 -2.7561 41 1 10.4945 -4.2437 -1.6801 42 1 8.0719 -3.7060 1.2707 43 1 8.2179 -2.7031 -0.2122 44 1 0.3740 -2.3041 0.0575 45 1 2.7960 -3.5083 1.1124 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_16926656_18051908.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:23:22 Heat of formation + Delta-G solvation = -86.452923 kcal Electronic energy + Delta-G solvation = -24353.430551 eV Core-core repulsion = 20926.654186 eV Total energy + Delta-G solvation = -3426.776365 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 372.067 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.75019 -39.31821 -37.67421 -36.69517 -33.96350 -33.05653 -30.89966 -30.10207 -29.10579 -28.37741 -28.04276 -27.32885 -26.52832 -24.11505 -22.55030 -22.15111 -20.65801 -18.91809 -18.28700 -17.77492 -17.19789 -16.73380 -16.18409 -15.68099 -15.46644 -15.17489 -15.02676 -14.94241 -14.58305 -14.34043 -13.91904 -13.82467 -13.79018 -13.54656 -13.43883 -13.33671 -13.20355 -13.14576 -13.07280 -12.83393 -12.71286 -12.52167 -12.34163 -12.21268 -11.94914 -11.72918 -11.50487 -11.35436 -11.16872 -11.11994 -10.76212 -10.60969 -10.44534 -10.20271 -9.73427 -9.16405 0.00787 0.06347 0.64241 1.15884 1.44498 1.50393 1.71364 1.90714 2.01679 2.04036 2.11882 2.43207 2.65838 3.42024 3.58612 3.67077 3.81709 3.88266 3.94711 4.07547 4.10778 4.25170 4.32460 4.42977 4.55416 4.60737 4.61165 4.65133 4.68874 4.72275 4.78135 4.80967 4.83473 4.85544 4.86103 4.96192 5.10755 5.11648 5.18638 5.19728 5.24462 5.36771 5.46864 5.52800 5.56216 5.61574 5.64714 6.22667 6.62961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.014 4.014 3 C -0.146 4.146 4 Br -0.048 7.048 5 C -0.049 4.049 6 C -0.206 4.206 7 C 0.149 3.851 8 O -0.318 6.318 9 C 0.055 3.945 10 C -0.080 4.080 11 C -0.123 4.123 12 C -0.415 4.415 13 Si 1.036 2.964 14 C -0.458 4.458 15 C -0.457 4.457 16 C -0.397 4.397 17 C -0.160 4.160 18 C -0.067 4.067 19 O -0.549 6.549 20 Si 0.948 3.052 21 H -0.220 1.220 22 H -0.266 1.266 23 H -0.266 1.266 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.150 0.850 28 H 0.160 0.840 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.128 0.872 45 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.405 -0.685 -0.639 4.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.016 4.016 3 C -0.225 4.225 4 Br 0.037 6.963 5 C -0.068 4.068 6 C -0.226 4.226 7 C 0.102 3.898 8 O -0.233 6.233 9 C -0.019 4.019 10 C -0.098 4.098 11 C -0.160 4.160 12 C -0.500 4.500 13 Si 1.230 2.770 14 C -0.565 4.565 15 C -0.564 4.564 16 C -0.482 4.482 17 C -0.161 4.161 18 C -0.177 4.177 19 O -0.357 6.357 20 Si 0.770 3.230 21 H -0.142 1.142 22 H -0.190 1.190 23 H -0.191 1.191 24 H 0.112 0.888 25 H 0.108 0.892 26 H 0.100 0.900 27 H 0.168 0.832 28 H 0.177 0.823 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.146 0.854 45 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 3.587 -0.690 -1.261 3.864 hybrid contribution 0.590 0.195 0.192 0.650 sum 4.177 -0.495 -1.069 4.340 Atomic orbital electron populations 1.21245 0.89007 1.04884 1.04424 1.19579 0.97421 0.90027 0.94552 1.21748 0.95227 0.91398 1.14125 1.96690 1.75585 1.26124 1.97865 1.21153 0.91731 0.99418 0.94537 1.21436 1.01694 0.90833 1.08593 1.18904 0.90811 0.85870 0.94182 1.86008 1.22190 1.27364 1.87690 1.23375 0.75987 0.99710 1.02782 1.21545 0.95845 0.93513 0.98909 1.22098 1.00796 0.96345 0.96793 1.26883 1.17664 0.99148 1.06300 0.79465 0.65563 0.66182 0.65824 1.26204 1.07332 1.12299 1.10653 1.26192 1.11233 1.05542 1.13414 1.26722 0.96668 1.15483 1.09359 1.19562 0.91140 0.96110 1.09337 1.24877 1.02311 0.90429 1.00114 1.86460 1.31471 1.71780 1.45953 0.85777 0.83161 0.78930 0.75128 1.14244 1.19000 1.19051 0.88793 0.89229 0.89968 0.83220 0.82277 0.90311 0.90736 0.89717 0.91702 0.92230 0.90694 0.90590 0.91044 0.91428 0.91118 0.91412 0.91205 0.90920 0.89105 0.89234 0.85434 0.76657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.05 8.90 71.24 0.63 0.59 16 2 C -0.01 -0.05 5.88 -19.86 -0.12 -0.17 16 3 C -0.15 -0.53 6.22 22.32 0.14 -0.39 16 4 Br -0.05 -0.15 31.68 -20.37 -0.65 -0.80 16 5 C -0.05 -0.06 9.78 22.27 0.22 0.16 16 6 C -0.21 0.03 9.04 22.36 0.20 0.23 16 7 C 0.15 0.29 6.08 22.50 0.14 0.42 16 8 O -0.32 0.07 5.34 -82.18 -0.44 -0.37 16 9 C 0.06 -0.24 3.98 71.98 0.29 0.05 16 10 C -0.08 0.38 2.58 -9.79 -0.03 0.35 16 11 C -0.12 0.29 5.06 31.80 0.16 0.45 16 12 C -0.42 1.54 5.95 72.99 0.43 1.97 16 13 Si 1.04 -7.98 13.35 68.60 0.92 -7.06 16 14 C -0.46 2.32 8.65 113.37 0.98 3.30 16 15 C -0.46 2.42 8.65 113.37 0.98 3.40 16 16 C -0.40 3.02 5.28 72.79 0.38 3.41 16 17 C -0.16 -0.56 4.50 -19.77 -0.09 -0.65 16 18 C -0.07 -0.19 2.62 71.23 0.19 0.00 16 19 O -0.55 -2.72 12.86 -138.47 -1.78 -4.50 16 20 Si 0.95 2.78 26.84 68.60 1.84 4.62 16 21 H -0.22 -0.51 4.50 99.48 0.45 -0.06 16 22 H -0.27 -1.47 7.11 99.48 0.71 -0.76 16 23 H -0.27 -1.24 7.11 99.48 0.71 -0.53 16 24 H 0.09 -0.17 8.14 -2.38 -0.02 -0.19 16 25 H 0.09 -0.11 6.34 -2.39 -0.02 -0.13 16 26 H 0.08 0.05 6.41 -2.38 -0.02 0.03 16 27 H 0.15 -0.33 8.06 -2.91 -0.02 -0.35 16 28 H 0.16 -0.82 6.30 -2.92 -0.02 -0.84 16 29 H 0.08 -0.49 7.65 -2.39 -0.02 -0.51 16 30 H 0.07 -0.43 7.60 -2.39 -0.02 -0.45 16 31 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 32 H 0.06 -0.18 8.05 -2.39 -0.02 -0.20 16 33 H 0.06 0.04 6.42 -2.39 -0.02 0.02 16 34 H 0.07 -0.24 8.06 -2.39 -0.02 -0.26 16 35 H 0.08 -0.23 8.06 -2.39 -0.02 -0.25 16 36 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 37 H 0.07 -0.29 7.96 -2.38 -0.02 -0.30 16 38 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 39 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 40 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 41 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 42 H 0.09 -0.76 8.04 -2.39 -0.02 -0.78 16 43 H 0.09 -0.79 7.85 -2.38 -0.02 -0.81 16 44 H 0.13 0.04 5.37 -2.39 -0.01 0.03 16 45 H 0.38 0.53 6.60 -74.06 -0.49 0.04 16 Total: 0.00 -8.92 366.81 5.39 -3.53 By element: Atomic # 1 Polarization: -9.53 SS G_CDS: 0.99 Total: -8.54 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: 4.51 Total: 13.13 kcal Atomic # 8 Polarization: -2.65 SS G_CDS: -2.22 Total: -4.87 kcal Atomic # 14 Polarization: -5.20 SS G_CDS: 2.76 Total: -2.44 kcal Atomic # 35 Polarization: -0.15 SS G_CDS: -0.65 Total: -0.80 kcal Total: -8.92 5.39 -3.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_16926656_18051908.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.923 kcal (2) G-P(sol) polarization free energy of solvation -8.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -3.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds