Wall clock time and date at job start Fri Mar 5 2021 23:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 C 1.52995 * 109.47643 * 190.93802 * 6 5 4 8 8 O 1.42901 * 109.47074 * 293.54788 * 7 6 5 9 9 C 1.35940 * 116.99916 * 179.97438 * 8 7 6 10 10 C 1.38721 * 119.99313 * 359.97438 * 9 8 7 11 11 C 1.38088 * 120.01308 * 179.97438 * 10 9 8 12 12 C 1.38811 * 119.98646 * 0.02562 * 11 10 9 13 13 N 1.40298 * 120.00988 * 179.97438 * 12 11 10 14 14 C 1.35198 * 126.04983 * 4.70994 * 13 12 11 15 15 C 1.35345 * 107.71657 * 179.89886 * 14 13 12 16 16 C 1.39898 * 107.92681 * 0.36876 * 15 14 13 17 17 N 1.30892 * 108.24284 * 359.77288 * 16 15 14 18 18 C 1.38852 * 119.98419 * 0.02562 * 12 11 10 19 19 C 1.38054 * 119.98447 * 359.71563 * 18 12 11 20 20 C 1.50698 * 119.99436 * 180.27519 * 19 18 12 21 21 O 1.42900 * 109.46584 * 105.26137 * 20 19 18 22 22 Si 1.86297 * 109.47248 * 345.26481 * 20 19 18 23 23 H 1.48504 * 109.47480 * 59.99795 * 22 20 19 24 24 H 1.48500 * 109.47290 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47120 * 299.99691 * 22 20 19 26 26 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 27 27 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 28 28 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 29 29 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 31 31 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 33 33 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 34 34 H 1.08999 * 111.05229 * 356.11516 * 4 2 1 35 35 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 36 36 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 37 37 H 1.09004 * 109.47418 * 70.93608 * 6 5 4 38 38 H 1.09007 * 109.46916 * 53.54343 * 7 6 5 39 39 H 1.09005 * 109.47687 * 173.54545 * 7 6 5 40 40 H 1.08003 * 119.98930 * 359.97438 * 10 9 8 41 41 H 1.07997 * 120.00852 * 179.97438 * 11 10 9 42 42 H 1.08001 * 126.14075 * 0.03885 * 14 13 12 43 43 H 1.07999 * 126.03713 * 180.13818 * 15 14 13 44 44 H 1.08006 * 125.87739 * 179.75430 * 16 15 14 45 45 H 1.07992 * 120.01224 * 180.02562 * 18 12 11 46 46 H 1.08992 * 109.47585 * 225.26111 * 20 19 18 47 47 H 0.96698 * 114.00598 * 299.99818 * 21 20 19 48 48 H 1.08996 * 111.41269 * 283.05303 * 26 6 5 49 49 H 1.09006 * 111.49251 * 158.06559 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1417 -2.9771 -1.5067 8 8 5.3027 -3.5593 -0.9107 9 6 5.8106 -4.6709 -1.5061 10 6 5.2025 -5.1894 -2.6400 11 6 5.7183 -6.3182 -3.2455 12 6 6.8452 -6.9344 -2.7190 13 7 7.3694 -8.0815 -3.3334 14 6 6.9327 -8.6366 -4.4862 15 6 7.7000 -9.7230 -4.7368 16 6 8.6310 -9.8412 -3.6993 17 7 8.4338 -8.8582 -2.8579 18 6 7.4530 -6.4157 -1.5834 19 6 6.9396 -5.2840 -0.9819 20 6 7.6027 -4.7174 0.2470 21 8 8.3273 -3.5368 -0.1044 22 14 8.7764 -5.9781 0.9567 23 1 9.8115 -6.3148 -0.0536 24 1 9.4303 -5.4195 2.1673 25 1 8.0235 -7.2050 1.3217 26 6 2.5568 -1.0142 -1.4447 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 2.1907 2.2612 0.8899 31 1 3.6274 1.7027 -0.0005 32 1 2.1908 2.2612 -0.8900 33 1 3.2797 -0.4330 2.0151 34 1 1.7543 -1.3786 2.0840 35 1 4.1055 -2.5196 1.2701 36 1 2.5407 -3.0054 0.5873 37 1 4.5675 -1.0680 -0.6042 38 1 3.3305 -3.7052 -1.5088 39 1 4.3683 -2.6826 -2.5315 40 1 4.3254 -4.7101 -3.0493 41 1 5.2446 -6.7220 -4.1280 42 1 6.1193 -8.2764 -5.0986 43 1 7.6073 -10.3843 -5.5856 44 1 9.3829 -10.6112 -3.6082 45 1 8.3300 -6.8945 -1.1736 46 1 6.8431 -4.4702 0.9885 47 1 9.0214 -3.6823 -0.7617 48 1 1.8198 -1.7216 -1.8246 49 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_7_16951038_18051908.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:32:26 Heat of formation + Delta-G solvation = -7.259799 kcal Electronic energy + Delta-G solvation = -27948.327891 eV Core-core repulsion = 24193.735738 eV Total energy + Delta-G solvation = -3754.592153 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.50124 -41.33606 -39.10824 -37.60734 -36.71398 -34.00772 -32.83502 -31.24791 -30.75380 -29.48871 -29.25776 -28.54822 -27.32942 -26.81344 -24.47070 -24.06830 -23.22779 -21.72345 -21.38358 -20.68678 -19.55676 -18.84436 -17.91628 -17.21928 -16.87906 -16.44564 -16.29270 -16.00286 -15.68981 -15.58770 -15.41071 -15.21237 -14.81319 -14.47976 -14.44031 -14.11998 -13.99878 -13.97888 -13.80798 -13.69748 -13.63407 -13.55635 -13.37908 -13.31049 -12.86008 -12.72588 -12.37693 -12.26629 -12.10349 -11.98874 -11.78456 -11.63665 -11.62381 -11.41869 -10.92727 -10.84832 -10.61389 -10.38541 -10.33490 -10.21536 -9.98515 -8.71249 -0.16877 0.00837 1.16119 1.19421 1.39257 1.48954 1.52309 1.59108 1.81619 1.83790 1.84197 1.97430 2.17117 2.50570 2.54278 3.30419 3.50296 3.64401 3.68682 3.76506 3.81034 3.93207 3.99563 4.00939 4.04901 4.23748 4.31250 4.43594 4.49771 4.52119 4.57212 4.59843 4.64892 4.66213 4.68047 4.68438 4.70143 4.71424 4.71659 4.92231 5.00655 5.02872 5.05576 5.09855 5.12494 5.31663 5.35163 5.38792 5.43244 5.47669 5.48895 5.66011 6.11456 6.36166 6.62573 6.65553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.442 4.442 2 Si 0.969 3.031 3 C -0.443 4.443 4 C -0.399 4.399 5 C -0.109 4.109 6 C -0.082 4.082 7 C 0.063 3.937 8 O -0.296 6.296 9 C 0.156 3.844 10 C -0.184 4.184 11 C -0.091 4.091 12 C 0.124 3.876 13 N -0.320 5.320 14 C 0.051 3.949 15 C -0.261 4.261 16 C 0.056 3.944 17 N -0.295 5.295 18 C -0.089 4.089 19 C -0.132 4.132 20 C -0.064 4.064 21 O -0.530 6.530 22 Si 0.938 3.062 23 H -0.248 1.248 24 H -0.249 1.249 25 H -0.247 1.247 26 C -0.394 4.394 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.142 0.858 41 H 0.136 0.864 42 H 0.178 0.822 43 H 0.155 0.845 44 H 0.191 0.809 45 H 0.145 0.855 46 H 0.121 0.879 47 H 0.373 0.627 48 H 0.081 0.919 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.385 0.820 -2.730 4.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.166 2.834 3 C -0.551 4.551 4 C -0.485 4.485 5 C -0.147 4.147 6 C -0.100 4.100 7 C -0.012 4.012 8 O -0.209 6.209 9 C 0.109 3.891 10 C -0.203 4.203 11 C -0.112 4.112 12 C 0.032 3.968 13 N -0.096 5.096 14 C -0.091 4.091 15 C -0.290 4.290 16 C -0.130 4.130 17 N -0.114 5.114 18 C -0.108 4.108 19 C -0.134 4.134 20 C -0.175 4.175 21 O -0.335 6.335 22 Si 0.760 3.240 23 H -0.172 1.172 24 H -0.173 1.173 25 H -0.171 1.171 26 C -0.479 4.479 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.159 0.841 41 H 0.153 0.847 42 H 0.195 0.805 43 H 0.173 0.827 44 H 0.208 0.792 45 H 0.163 0.837 46 H 0.139 0.861 47 H 0.220 0.780 48 H 0.100 0.900 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.834 1.225 -0.661 3.157 hybrid contribution -0.364 -0.684 -1.822 1.979 sum -3.197 0.541 -2.483 4.084 Atomic orbital electron populations 1.26018 1.19979 1.04560 1.04503 0.80491 0.67354 0.67595 0.67936 1.26019 1.06735 1.17847 1.04507 1.26507 1.05518 1.06343 1.10128 1.21709 1.00665 0.98101 0.94206 1.21685 0.98695 0.95073 0.94594 1.23071 0.85774 0.95146 0.97206 1.86196 1.43788 1.38461 1.52405 1.18744 0.92207 0.86917 0.91269 1.21113 1.02966 0.98765 0.97503 1.20617 0.94270 0.95783 1.00491 1.17258 0.96045 0.87632 0.95901 1.45839 1.25612 1.20349 1.17762 1.22633 1.01005 0.95888 0.89606 1.21640 1.01110 1.02183 1.04023 1.24113 0.99435 0.97024 0.92458 1.77464 1.04438 1.06403 1.23132 1.20687 1.00390 0.95194 0.94536 1.19513 0.96726 0.96668 1.00456 1.24772 1.00709 0.95335 0.96705 1.86564 1.51452 1.31440 1.64033 0.85880 0.79546 0.77700 0.80849 1.17203 1.17310 1.17060 1.26830 1.02668 1.07823 1.10580 0.91162 0.91115 0.91082 0.91062 0.90976 0.91187 0.90456 0.90385 0.91150 0.92098 0.89568 0.91834 0.91745 0.84068 0.84653 0.80532 0.82722 0.79238 0.83741 0.86146 0.78033 0.90019 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.90 8.65 101.05 0.87 1.78 16 2 Si 0.97 -2.92 13.35 -169.99 -2.27 -5.19 16 3 C -0.44 0.79 8.65 101.05 0.87 1.66 16 4 C -0.40 0.55 5.85 38.29 0.22 0.77 16 5 C -0.11 0.06 5.21 -25.30 -0.13 -0.07 16 6 C -0.08 0.08 2.40 -88.69 -0.21 -0.13 16 7 C 0.06 -0.04 4.11 37.15 0.15 0.11 16 8 O -0.30 -0.49 9.24 -19.55 -0.18 -0.68 16 9 C 0.16 0.26 6.66 -39.21 -0.26 0.00 16 10 C -0.18 -0.02 9.03 -39.46 -0.36 -0.38 16 11 C -0.09 -0.03 9.45 -39.42 -0.37 -0.40 16 12 C 0.12 0.31 6.68 -83.54 -0.56 -0.25 16 13 N -0.32 -1.02 3.80 -10.67 -0.04 -1.06 16 14 C 0.05 0.04 10.79 -17.10 -0.18 -0.14 16 15 C -0.26 -0.16 10.81 -39.99 -0.43 -0.59 16 16 C 0.06 0.10 12.03 -17.33 -0.21 -0.11 16 17 N -0.30 -1.29 11.88 30.64 0.36 -0.92 16 18 C -0.09 -0.24 8.27 -39.42 -0.33 -0.56 16 19 C -0.13 -0.26 5.27 -104.49 -0.55 -0.81 16 20 C -0.06 -0.09 2.37 36.00 0.09 0.00 16 21 O -0.53 -0.96 12.88 -35.23 -0.45 -1.41 16 22 Si 0.94 1.26 25.48 -169.99 -4.33 -3.07 16 23 H -0.25 -0.43 6.74 56.52 0.38 -0.05 16 24 H -0.25 -0.55 7.11 56.52 0.40 -0.15 16 25 H -0.25 -0.57 7.11 56.52 0.40 -0.17 16 26 C -0.39 0.97 5.30 38.80 0.21 1.18 16 27 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 28 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 29 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 30 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 31 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 32 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 33 H 0.08 -0.08 8.04 -51.93 -0.42 -0.50 16 34 H 0.08 -0.11 8.04 -51.93 -0.42 -0.53 16 35 H 0.07 0.05 8.12 -51.93 -0.42 -0.37 16 36 H 0.06 -0.05 8.04 -51.93 -0.42 -0.46 16 37 H 0.09 -0.03 8.14 -51.93 -0.42 -0.46 16 38 H 0.06 -0.11 7.59 -51.93 -0.39 -0.50 16 39 H 0.06 -0.09 7.66 -51.93 -0.40 -0.49 16 40 H 0.14 -0.29 6.29 -52.48 -0.33 -0.62 16 41 H 0.14 -0.31 6.76 -52.49 -0.35 -0.66 16 42 H 0.18 -0.48 7.06 -52.49 -0.37 -0.85 16 43 H 0.16 -0.27 8.06 -52.49 -0.42 -0.70 16 44 H 0.19 -0.27 8.06 -52.48 -0.42 -0.70 16 45 H 0.15 0.44 4.53 -52.49 -0.24 0.20 16 46 H 0.12 0.13 7.82 -51.93 -0.41 -0.28 16 47 H 0.37 -0.49 8.70 45.56 0.40 -0.10 16 48 H 0.08 -0.23 8.03 -51.93 -0.42 -0.65 16 49 H 0.08 -0.22 8.06 -51.93 -0.42 -0.64 16 LS Contribution 395.89 15.07 5.97 5.97 Total: 0.00 -6.92 395.89 -9.29 -16.21 By element: Atomic # 1 Polarization: -4.73 SS G_CDS: -7.17 Total: -11.90 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -1.18 Total: 2.05 kcal Atomic # 7 Polarization: -2.31 SS G_CDS: 0.32 Total: -1.98 kcal Atomic # 8 Polarization: -1.45 SS G_CDS: -0.63 Total: -2.09 kcal Atomic # 14 Polarization: -1.66 SS G_CDS: -6.60 Total: -8.26 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -6.92 -9.29 -16.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_16951038_18051908.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.953 kcal (2) G-P(sol) polarization free energy of solvation -6.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds