Wall clock time and date at job start Fri Mar 5 2021 23:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 C 1.52995 * 109.47643 * 190.93802 * 6 5 4 8 8 O 1.42901 * 109.47074 * 293.54788 * 7 6 5 9 9 C 1.35940 * 116.99916 * 179.97438 * 8 7 6 10 10 C 1.38721 * 119.99313 * 359.97438 * 9 8 7 11 11 C 1.38088 * 120.01308 * 179.97438 * 10 9 8 12 12 C 1.38811 * 119.98646 * 0.02562 * 11 10 9 13 13 N 1.40298 * 120.00988 * 179.97438 * 12 11 10 14 14 C 1.35198 * 126.04983 * 4.70994 * 13 12 11 15 15 C 1.35345 * 107.71657 * 179.89886 * 14 13 12 16 16 C 1.39898 * 107.92681 * 0.36876 * 15 14 13 17 17 N 1.30892 * 108.24284 * 359.77288 * 16 15 14 18 18 C 1.38852 * 119.98419 * 0.02562 * 12 11 10 19 19 C 1.38054 * 119.98447 * 359.71563 * 18 12 11 20 20 C 1.50698 * 119.99436 * 180.27519 * 19 18 12 21 21 O 1.42900 * 109.46584 * 105.26137 * 20 19 18 22 22 Si 1.86297 * 109.47248 * 345.26481 * 20 19 18 23 23 H 1.48504 * 109.47480 * 59.99795 * 22 20 19 24 24 H 1.48500 * 109.47290 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47120 * 299.99691 * 22 20 19 26 26 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 27 27 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 28 28 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 29 29 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 31 31 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 33 33 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 34 34 H 1.08999 * 111.05229 * 356.11516 * 4 2 1 35 35 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 36 36 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 37 37 H 1.09004 * 109.47418 * 70.93608 * 6 5 4 38 38 H 1.09007 * 109.46916 * 53.54343 * 7 6 5 39 39 H 1.09005 * 109.47687 * 173.54545 * 7 6 5 40 40 H 1.08003 * 119.98930 * 359.97438 * 10 9 8 41 41 H 1.07997 * 120.00852 * 179.97438 * 11 10 9 42 42 H 1.08001 * 126.14075 * 0.03885 * 14 13 12 43 43 H 1.07999 * 126.03713 * 180.13818 * 15 14 13 44 44 H 1.08006 * 125.87739 * 179.75430 * 16 15 14 45 45 H 1.07992 * 120.01224 * 180.02562 * 18 12 11 46 46 H 1.08992 * 109.47585 * 225.26111 * 20 19 18 47 47 H 0.96698 * 114.00598 * 299.99818 * 21 20 19 48 48 H 1.08996 * 111.41269 * 283.05303 * 26 6 5 49 49 H 1.09006 * 111.49251 * 158.06559 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1417 -2.9771 -1.5067 8 8 5.3027 -3.5593 -0.9107 9 6 5.8106 -4.6709 -1.5061 10 6 5.2025 -5.1894 -2.6400 11 6 5.7183 -6.3182 -3.2455 12 6 6.8452 -6.9344 -2.7190 13 7 7.3694 -8.0815 -3.3334 14 6 6.9327 -8.6366 -4.4862 15 6 7.7000 -9.7230 -4.7368 16 6 8.6310 -9.8412 -3.6993 17 7 8.4338 -8.8582 -2.8579 18 6 7.4530 -6.4157 -1.5834 19 6 6.9396 -5.2840 -0.9819 20 6 7.6027 -4.7174 0.2470 21 8 8.3273 -3.5368 -0.1044 22 14 8.7764 -5.9781 0.9567 23 1 9.8115 -6.3148 -0.0536 24 1 9.4303 -5.4195 2.1673 25 1 8.0235 -7.2050 1.3217 26 6 2.5568 -1.0142 -1.4447 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 2.1907 2.2612 0.8899 31 1 3.6274 1.7027 -0.0005 32 1 2.1908 2.2612 -0.8900 33 1 3.2797 -0.4330 2.0151 34 1 1.7543 -1.3786 2.0840 35 1 4.1055 -2.5196 1.2701 36 1 2.5407 -3.0054 0.5873 37 1 4.5675 -1.0680 -0.6042 38 1 3.3305 -3.7052 -1.5088 39 1 4.3683 -2.6826 -2.5315 40 1 4.3254 -4.7101 -3.0493 41 1 5.2446 -6.7220 -4.1280 42 1 6.1193 -8.2764 -5.0986 43 1 7.6073 -10.3843 -5.5856 44 1 9.3829 -10.6112 -3.6082 45 1 8.3300 -6.8945 -1.1736 46 1 6.8431 -4.4702 0.9885 47 1 9.0214 -3.6823 -0.7617 48 1 1.8198 -1.7216 -1.8246 49 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_16951038_18051908.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:32:26 Heat of formation + Delta-G solvation = 0.678047 kcal Electronic energy + Delta-G solvation = -27947.983680 eV Core-core repulsion = 24193.735738 eV Total energy + Delta-G solvation = -3754.247942 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.163 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.55289 -41.37011 -39.12513 -37.71404 -36.64818 -34.07698 -32.87289 -31.29465 -30.67281 -29.50686 -29.09026 -28.36597 -27.23344 -26.87697 -24.43852 -24.07225 -23.23838 -21.77141 -21.42343 -20.60461 -19.59781 -18.87077 -17.99779 -17.23248 -16.89558 -16.50509 -16.34188 -16.05365 -15.69765 -15.62035 -15.42758 -15.25378 -14.81644 -14.54881 -14.35935 -14.09957 -13.84275 -13.82570 -13.75145 -13.64001 -13.57967 -13.41817 -13.28692 -13.16013 -12.88181 -12.63360 -12.36159 -12.29205 -12.18627 -12.04581 -11.85418 -11.73483 -11.59766 -11.33734 -10.91747 -10.75165 -10.46430 -10.42815 -10.26619 -10.25063 -10.03425 -8.77463 -0.22311 -0.04081 1.05665 1.10719 1.31754 1.36254 1.41927 1.72058 1.78766 1.81506 2.02783 2.04945 2.21028 2.48789 2.66858 3.26436 3.47310 3.63400 3.72529 3.83820 3.87038 3.95942 4.02796 4.08047 4.11947 4.23191 4.37137 4.43937 4.52984 4.58929 4.60296 4.68354 4.71630 4.74641 4.78600 4.82113 4.84631 4.86548 4.87372 4.88878 5.02416 5.04340 5.08693 5.16075 5.24811 5.34424 5.38358 5.51943 5.55906 5.61932 5.65456 5.65817 6.10467 6.36617 6.58918 6.63372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.039 2.961 3 C -0.459 4.459 4 C -0.418 4.418 5 C -0.111 4.111 6 C -0.083 4.083 7 C 0.056 3.944 8 O -0.312 6.312 9 C 0.145 3.855 10 C -0.178 4.178 11 C -0.084 4.084 12 C 0.105 3.895 13 N -0.333 5.333 14 C 0.049 3.951 15 C -0.268 4.268 16 C 0.049 3.951 17 N -0.344 5.344 18 C -0.104 4.104 19 C -0.141 4.141 20 C -0.058 4.058 21 O -0.543 6.543 22 Si 0.968 3.032 23 H -0.257 1.257 24 H -0.261 1.261 25 H -0.264 1.264 26 C -0.395 4.395 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.168 0.832 41 H 0.166 0.834 42 H 0.212 0.788 43 H 0.178 0.822 44 H 0.212 0.788 45 H 0.132 0.868 46 H 0.120 0.880 47 H 0.385 0.615 48 H 0.092 0.908 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.029 0.985 -4.690 6.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.232 2.768 3 C -0.566 4.566 4 C -0.502 4.502 5 C -0.148 4.148 6 C -0.101 4.101 7 C -0.018 4.018 8 O -0.225 6.225 9 C 0.098 3.902 10 C -0.197 4.197 11 C -0.104 4.104 12 C 0.013 3.987 13 N -0.109 5.109 14 C -0.093 4.093 15 C -0.296 4.296 16 C -0.137 4.137 17 N -0.164 5.164 18 C -0.124 4.124 19 C -0.143 4.143 20 C -0.169 4.169 21 O -0.350 6.350 22 Si 0.793 3.207 23 H -0.182 1.182 24 H -0.186 1.186 25 H -0.189 1.189 26 C -0.480 4.480 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.185 0.815 41 H 0.183 0.817 42 H 0.229 0.771 43 H 0.196 0.804 44 H 0.228 0.772 45 H 0.150 0.850 46 H 0.138 0.862 47 H 0.233 0.767 48 H 0.111 0.889 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.463 1.391 -2.613 5.355 hybrid contribution 0.152 -0.746 -1.206 1.426 sum -4.311 0.646 -3.819 5.795 Atomic orbital electron populations 1.26157 1.20807 1.04656 1.04548 0.79423 0.65834 0.65572 0.65925 1.26225 1.06577 1.19281 1.04550 1.26742 1.05486 1.06724 1.11247 1.21717 0.99999 0.98553 0.94545 1.21687 0.98967 0.95035 0.94446 1.23283 0.85463 0.95422 0.97666 1.86187 1.44689 1.38534 1.53059 1.18897 0.92269 0.87115 0.91907 1.21408 1.03276 0.98408 0.96589 1.20937 0.93201 0.95284 1.01000 1.17566 0.96978 0.87991 0.96199 1.45989 1.25739 1.20626 1.18560 1.23304 1.01505 0.95585 0.88950 1.22015 1.00648 1.02612 1.04372 1.24638 0.99933 0.96766 0.92355 1.77410 1.06116 1.07889 1.25007 1.20652 1.00554 0.95773 0.95383 1.19508 0.97325 0.96768 1.00656 1.24686 1.00526 0.94960 0.96777 1.86521 1.52024 1.31796 1.64613 0.85448 0.78823 0.76714 0.79678 1.18165 1.18568 1.18854 1.26896 1.02191 1.08049 1.10891 0.90834 0.91393 0.90966 0.91341 0.91486 0.90856 0.91254 0.90448 0.93197 0.91738 0.90560 0.90525 0.90582 0.81487 0.81701 0.77135 0.80418 0.77180 0.85032 0.86223 0.76667 0.88892 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.29 8.65 113.37 0.98 3.27 16 2 Si 1.04 -6.90 13.35 68.60 0.92 -5.99 16 3 C -0.46 1.72 8.65 113.37 0.98 2.70 16 4 C -0.42 0.90 5.85 72.72 0.43 1.32 16 5 C -0.11 0.05 5.21 31.52 0.16 0.22 16 6 C -0.08 0.19 2.40 -9.54 -0.02 0.17 16 7 C 0.06 -0.12 4.11 71.98 0.30 0.17 16 8 O -0.31 -1.13 9.24 -92.88 -0.86 -1.98 16 9 C 0.15 0.50 6.66 22.51 0.15 0.65 16 10 C -0.18 0.19 9.03 22.35 0.20 0.39 16 11 C -0.08 0.06 9.45 22.37 0.21 0.27 16 12 C 0.10 0.57 6.68 38.07 0.25 0.83 16 13 N -0.33 -2.25 3.80 -187.68 -0.71 -2.97 16 14 C 0.05 0.03 10.79 83.51 0.90 0.93 16 15 C -0.27 -0.12 10.81 22.00 0.24 0.12 16 16 C 0.05 0.19 12.03 85.23 1.02 1.22 16 17 N -0.34 -3.48 11.88 -56.97 -0.68 -4.15 16 18 C -0.10 -0.73 8.27 22.37 0.19 -0.55 16 19 C -0.14 -0.74 5.27 -19.78 -0.10 -0.85 16 20 C -0.06 -0.26 2.37 71.24 0.17 -0.09 16 21 O -0.54 -2.74 12.88 -148.98 -1.92 -4.65 16 22 Si 0.97 4.79 25.48 68.60 1.75 6.54 16 23 H -0.26 -1.56 6.74 99.48 0.67 -0.89 16 24 H -0.26 -1.68 7.11 99.48 0.71 -0.97 16 25 H -0.26 -1.94 7.11 99.48 0.71 -1.23 16 26 C -0.40 2.52 5.30 73.05 0.39 2.90 16 27 H 0.07 -0.40 7.96 -2.39 -0.02 -0.41 16 28 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 29 H 0.07 -0.36 7.96 -2.38 -0.02 -0.38 16 30 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 31 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 32 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 33 H 0.07 -0.05 8.04 -2.39 -0.02 -0.07 16 34 H 0.08 -0.17 8.04 -2.39 -0.02 -0.19 16 35 H 0.05 0.17 8.12 -2.39 -0.02 0.15 16 36 H 0.06 -0.09 8.04 -2.39 -0.02 -0.11 16 37 H 0.08 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.08 -0.38 7.59 -2.38 -0.02 -0.40 16 39 H 0.08 -0.35 7.66 -2.38 -0.02 -0.37 16 40 H 0.17 -1.13 6.29 -2.91 -0.02 -1.15 16 41 H 0.17 -1.23 6.76 -2.91 -0.02 -1.25 16 42 H 0.21 -1.70 7.06 -2.91 -0.02 -1.72 16 43 H 0.18 -0.93 8.06 -2.91 -0.02 -0.95 16 44 H 0.21 -0.53 8.06 -2.91 -0.02 -0.56 16 45 H 0.13 1.17 4.53 -2.91 -0.01 1.16 16 46 H 0.12 0.49 7.82 -2.39 -0.02 0.48 16 47 H 0.38 -0.44 8.70 -74.06 -0.64 -1.09 16 48 H 0.09 -0.75 8.03 -2.39 -0.02 -0.77 16 49 H 0.09 -0.65 8.06 -2.38 -0.02 -0.67 16 Total: 0.00 -17.99 395.89 5.96 -12.03 By element: Atomic # 1 Polarization: -13.53 SS G_CDS: 1.02 Total: -12.51 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: 6.44 Total: 13.69 kcal Atomic # 7 Polarization: -5.73 SS G_CDS: -1.39 Total: -7.12 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: -2.78 Total: -6.64 kcal Atomic # 14 Polarization: -2.12 SS G_CDS: 2.66 Total: 0.55 kcal Total: -17.99 5.96 -12.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_16951038_18051908.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.711 kcal (2) G-P(sol) polarization free energy of solvation -17.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds