Wall clock time and date at job start Fri Mar 5 2021 23:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47391 * 2 1 4 4 C 1.52998 * 109.47504 * 239.99770 * 2 1 3 5 5 C 1.50705 * 109.46933 * 120.00230 * 2 1 3 6 6 C 1.38242 * 119.97239 * 359.97438 * 5 2 1 7 7 C 1.38284 * 120.11408 * 180.02562 * 6 5 2 8 8 C 1.38122 * 120.05269 * 359.97438 * 7 6 5 9 9 C 1.50707 * 120.02850 * 179.97438 * 8 7 6 10 10 O 1.42895 * 109.47171 * 105.02250 * 9 8 7 11 11 Si 1.86305 * 109.46717 * 345.02458 * 9 8 7 12 12 H 1.48497 * 109.47215 * 299.99634 * 11 9 8 13 13 H 1.48496 * 109.47512 * 59.99870 * 11 9 8 14 14 H 1.48504 * 109.47015 * 180.02562 * 11 9 8 15 15 C 1.38751 * 119.94922 * 359.97438 * 8 7 6 16 16 O 1.35900 * 120.06039 * 180.02562 * 15 8 7 17 17 C 1.42901 * 117.00200 * 179.97438 * 16 15 8 18 18 C 1.52995 * 109.47074 * 179.97438 * 17 16 15 19 19 C 1.53566 * 109.47643 * 293.54788 * 18 17 16 20 20 C 1.55147 * 111.29010 * 190.93802 * 19 18 17 21 21 Si 1.89333 * 101.34989 * 28.58791 * 20 19 18 22 22 C 1.86301 * 111.45813 * 114.13512 * 21 20 19 23 23 C 1.86297 * 111.45926 * 239.08100 * 21 20 19 24 24 C 1.56066 * 109.48114 * 173.43596 * 18 17 16 25 25 C 1.38164 * 119.97209 * 180.26052 * 5 2 1 26 26 H 1.08998 * 109.47673 * 300.00297 * 1 2 3 27 27 H 1.09005 * 109.47157 * 60.00133 * 1 2 3 28 28 H 1.09003 * 109.47489 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47190 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47287 * 300.00116 * 3 2 1 31 31 H 1.09007 * 109.46777 * 59.99383 * 3 2 1 32 32 H 1.08999 * 109.47368 * 300.00271 * 4 2 1 33 33 H 1.09000 * 109.46958 * 60.00360 * 4 2 1 34 34 H 1.09003 * 109.47428 * 180.02562 * 4 2 1 35 35 H 1.08005 * 119.94411 * 0.02562 * 6 5 2 36 36 H 1.07997 * 119.97609 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47388 * 225.02603 * 9 8 7 38 38 H 0.96699 * 114.00524 * 180.02562 * 10 9 8 39 39 H 1.09007 * 109.46885 * 60.00180 * 17 16 15 40 40 H 1.09005 * 109.47062 * 300.00380 * 17 16 15 41 41 H 1.09004 * 109.46872 * 53.55317 * 18 17 16 42 42 H 1.09003 * 109.12206 * 70.45930 * 19 18 17 43 43 H 1.08996 * 109.12221 * 311.42400 * 19 18 17 44 44 H 1.09002 * 111.04815 * 270.56954 * 20 19 18 45 45 H 1.08999 * 111.04827 * 146.61077 * 20 19 18 46 46 H 1.09002 * 109.47148 * 185.06678 * 22 21 20 47 47 H 1.09001 * 109.46900 * 65.06830 * 22 21 20 48 48 H 1.09004 * 109.47198 * 305.06808 * 22 21 20 49 49 H 1.08995 * 109.47233 * 294.93123 * 23 21 20 50 50 H 1.08997 * 109.47080 * 54.93469 * 23 21 20 51 51 H 1.08998 * 109.47258 * 174.93080 * 23 21 20 52 52 H 1.08996 * 111.41269 * 43.11689 * 24 18 17 53 53 H 1.09006 * 111.49251 * 278.12945 * 24 18 17 54 54 H 1.08004 * 120.02980 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0322 -0.7105 1.2305 6 6 1.1334 -1.2352 2.1403 7 6 1.5910 -1.8872 3.2706 8 6 2.9481 -2.0162 3.4930 9 6 3.4463 -2.7264 4.7253 10 8 3.9326 -4.0209 4.3652 11 14 2.0504 -2.9049 5.9461 12 1 1.5451 -1.5596 6.3204 13 1 0.9522 -3.6926 5.3307 14 1 2.5414 -3.6042 7.1607 15 6 3.8525 -1.4914 2.5808 16 8 5.1882 -1.6175 2.7971 17 6 6.0604 -1.0534 1.8157 18 6 7.5143 -1.2919 2.2282 19 6 7.8216 -0.4954 3.5047 20 6 9.3428 -0.4841 3.8091 21 14 10.0722 -0.6445 2.0693 22 6 11.0050 0.8912 1.5771 23 6 11.1418 -2.1622 1.9159 24 6 8.4640 -0.8262 1.0806 25 6 3.3907 -0.8317 1.4513 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2492 33 1 1.6768 -0.2074 -2.1392 34 1 3.1301 -0.7217 -1.2489 35 1 0.0718 -1.1357 1.9680 36 1 0.8869 -2.2959 3.9801 37 1 4.2524 -2.1482 5.1771 38 1 4.2696 -4.5361 5.1110 39 1 5.8760 0.0182 1.7388 40 1 5.8742 -1.5243 0.8504 41 1 7.6688 -2.3543 2.4167 42 1 7.2929 -0.9477 4.3438 43 1 7.4751 0.5302 3.3777 44 1 9.6239 -1.3338 4.4313 45 1 9.6421 0.4553 4.2740 46 1 11.3331 0.8008 0.5416 47 1 11.8738 1.0117 2.2243 48 1 10.3539 1.7596 1.6774 49 1 12.0114 -2.0609 2.5652 50 1 10.5690 -3.0416 2.2102 51 1 11.4707 -2.2719 0.8826 52 1 8.1441 0.1279 0.6619 53 1 8.5569 -1.5872 0.3056 54 1 4.0926 -0.4179 0.7424 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_16982346_18051908.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:43:09 Heat of formation + Delta-G solvation = -101.469782 kcal Electronic energy + Delta-G solvation = -28183.410929 eV Core-core repulsion = 24629.188530 eV Total energy + Delta-G solvation = -3554.222399 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.203 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.61271 -39.55039 -38.20034 -36.93484 -36.24301 -32.05029 -31.39131 -30.48127 -29.11635 -28.38274 -28.26630 -28.15824 -27.15332 -26.51567 -24.25525 -22.98412 -22.77129 -20.81166 -20.40592 -18.47909 -18.41518 -17.44626 -17.03554 -16.87421 -16.09072 -15.80954 -15.71964 -15.31348 -15.20239 -15.15818 -14.64446 -14.49629 -14.27739 -14.04205 -13.86466 -13.79916 -13.70043 -13.54859 -13.42545 -13.29781 -13.17954 -13.04239 -12.97474 -12.71281 -12.60512 -12.54475 -12.41246 -12.22786 -12.18182 -12.09047 -11.89651 -11.76678 -11.61914 -11.53235 -11.39842 -11.32701 -10.76868 -10.45849 -10.28121 -10.25172 -9.81934 -9.13889 0.18426 0.42307 1.14094 1.42708 1.47667 1.69282 1.86201 2.00635 2.03617 2.25948 2.60791 2.64651 3.43682 3.61785 3.70035 3.79016 3.93549 3.98776 4.02425 4.06594 4.10521 4.19690 4.27602 4.30696 4.39552 4.43669 4.53902 4.57669 4.63516 4.69960 4.72976 4.73297 4.77157 4.81410 4.83636 4.85477 4.85558 4.86162 4.92783 4.98412 4.99408 5.05170 5.11463 5.17368 5.21431 5.27728 5.31402 5.35868 5.37977 5.43258 5.48038 5.52398 5.59792 5.62861 5.64507 5.77994 6.43541 6.82663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.031 4.031 3 C -0.137 4.137 4 C -0.138 4.138 5 C -0.029 4.029 6 C -0.163 4.163 7 C -0.094 4.094 8 C -0.138 4.138 9 C -0.074 4.074 10 O -0.561 6.561 11 Si 0.981 3.019 12 H -0.258 1.258 13 H -0.260 1.260 14 H -0.254 1.254 15 C 0.143 3.857 16 O -0.316 6.316 17 C 0.062 3.938 18 C -0.081 4.081 19 C -0.108 4.108 20 C -0.414 4.414 21 Si 1.041 2.959 22 C -0.453 4.453 23 C -0.457 4.457 24 C -0.401 4.401 25 C -0.210 4.210 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.147 0.853 36 H 0.136 0.864 37 H 0.074 0.926 38 H 0.392 0.608 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.050 0.950 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.070 0.930 49 H 0.070 0.930 50 H 0.066 0.934 51 H 0.072 0.928 52 H 0.088 0.912 53 H 0.086 0.914 54 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.468 2.137 -1.270 2.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.031 4.031 3 C -0.195 4.195 4 C -0.195 4.195 5 C -0.029 4.029 6 C -0.180 4.180 7 C -0.111 4.111 8 C -0.139 4.139 9 C -0.183 4.183 10 O -0.369 6.369 11 Si 0.804 3.196 12 H -0.182 1.182 13 H -0.185 1.185 14 H -0.178 1.178 15 C 0.097 3.903 16 O -0.230 6.230 17 C -0.013 4.013 18 C -0.100 4.100 19 C -0.146 4.146 20 C -0.498 4.498 21 Si 1.234 2.766 22 C -0.561 4.561 23 C -0.564 4.564 24 C -0.486 4.486 25 C -0.229 4.229 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.164 0.836 36 H 0.154 0.846 37 H 0.092 0.908 38 H 0.241 0.759 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.091 0.909 47 H 0.089 0.911 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.086 0.914 51 H 0.091 0.909 52 H 0.106 0.894 53 H 0.105 0.895 54 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.766 2.163 -1.114 2.551 hybrid contribution 0.345 -0.229 0.227 0.472 sum 1.111 1.934 -0.886 2.400 Atomic orbital electron populations 1.21981 0.93192 1.02362 1.02707 1.19589 0.96522 0.95214 0.91783 1.21885 1.01091 0.94039 1.02444 1.21888 1.01054 1.00138 0.96441 1.19900 0.92259 0.95212 0.95517 1.21267 1.01056 1.01174 0.94542 1.21111 0.93708 0.98029 0.98283 1.18886 0.92450 1.04502 0.98030 1.24682 1.06907 0.86142 1.00573 1.86485 1.84133 1.27045 1.39215 0.85298 0.77106 0.80788 0.76366 1.18163 1.18454 1.17757 1.18914 0.83390 0.94438 0.93586 1.86111 1.13180 1.75011 1.48684 1.23146 0.89229 0.98136 0.90803 1.21690 0.91357 1.01254 0.95667 1.21689 0.96555 0.99874 0.96468 1.26710 1.00612 1.04442 1.18080 0.79412 0.65458 0.66097 0.65617 1.26143 1.08639 1.15504 1.05811 1.26191 1.09986 1.15466 1.04780 1.26978 1.14607 1.04607 1.02359 1.21221 0.96969 1.05854 0.98809 0.91902 0.91353 0.92131 0.92548 0.91097 0.92746 0.93024 0.91036 0.92622 0.83572 0.84619 0.90838 0.75856 0.91438 0.91880 0.90514 0.93068 0.92053 0.90874 0.90229 0.90870 0.91114 0.91057 0.91052 0.91442 0.90892 0.89358 0.89533 0.84373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.21 7.13 71.98 0.51 0.72 16 2 C -0.03 -0.01 0.85 -52.93 -0.05 -0.06 16 3 C -0.14 0.12 8.28 71.98 0.60 0.72 16 4 C -0.14 0.03 8.29 71.98 0.60 0.63 16 5 C -0.03 -0.12 4.76 -19.88 -0.09 -0.22 16 6 C -0.16 -0.75 8.97 22.28 0.20 -0.55 16 7 C -0.09 -0.60 8.66 22.25 0.19 -0.41 16 8 C -0.14 -1.17 5.31 -19.77 -0.10 -1.27 16 9 C -0.07 -0.38 2.37 71.24 0.17 -0.21 16 10 O -0.56 -3.39 12.86 -148.98 -1.92 -5.31 16 11 Si 0.98 2.08 25.49 68.60 1.75 3.83 16 12 H -0.26 -0.84 7.11 99.48 0.71 -0.13 16 13 H -0.26 -0.99 6.73 99.48 0.67 -0.32 16 14 H -0.25 -0.33 7.11 99.48 0.71 0.38 16 15 C 0.14 1.25 6.66 22.51 0.15 1.40 16 16 O -0.32 -2.60 9.25 -92.42 -0.85 -3.45 16 17 C 0.06 0.17 4.11 71.98 0.30 0.46 16 18 C -0.08 -0.04 2.40 -9.54 -0.02 -0.06 16 19 C -0.11 -0.11 5.21 31.52 0.16 0.06 16 20 C -0.41 0.73 5.85 72.72 0.43 1.16 16 21 Si 1.04 -5.89 13.35 68.60 0.92 -4.97 16 22 C -0.45 1.95 8.65 113.37 0.98 2.93 16 23 C -0.46 1.54 8.65 113.37 0.98 2.52 16 24 C -0.40 1.48 5.30 73.05 0.39 1.87 16 25 C -0.21 -1.18 7.70 22.37 0.17 -1.01 16 26 H 0.06 -0.10 7.51 -2.39 -0.02 -0.12 16 27 H 0.07 -0.19 8.14 -2.38 -0.02 -0.21 16 28 H 0.06 -0.07 7.51 -2.39 -0.02 -0.09 16 29 H 0.06 -0.05 7.37 -2.39 -0.02 -0.07 16 30 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 31 H 0.05 0.01 8.14 -2.38 -0.02 -0.01 16 32 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 34 H 0.05 -0.01 7.40 -2.39 -0.02 -0.02 16 35 H 0.15 0.10 5.89 -2.91 -0.02 0.08 16 36 H 0.14 0.47 4.89 -2.91 -0.01 0.46 16 37 H 0.07 0.30 7.83 -2.39 -0.02 0.28 16 38 H 0.39 -1.24 8.74 -74.06 -0.65 -1.89 16 39 H 0.07 0.06 7.58 -2.38 -0.02 0.04 16 40 H 0.06 0.13 7.68 -2.38 -0.02 0.11 16 41 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 42 H 0.05 0.22 8.12 -2.39 -0.02 0.20 16 43 H 0.06 0.04 8.04 -2.39 -0.02 0.02 16 44 H 0.07 -0.08 8.04 -2.39 -0.02 -0.10 16 45 H 0.08 -0.17 8.04 -2.39 -0.02 -0.19 16 46 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 47 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 48 H 0.07 -0.28 7.96 -2.38 -0.02 -0.30 16 49 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 50 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 51 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 52 H 0.09 -0.42 8.03 -2.39 -0.02 -0.44 16 53 H 0.09 -0.38 8.06 -2.38 -0.02 -0.40 16 54 H 0.14 0.35 5.34 -2.91 -0.02 0.34 16 Total: 0.00 -11.57 413.74 6.37 -5.20 By element: Atomic # 1 Polarization: -4.88 SS G_CDS: 0.92 Total: -3.96 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 5.56 Total: 8.67 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -2.77 Total: -8.76 kcal Atomic # 14 Polarization: -3.81 SS G_CDS: 2.66 Total: -1.15 kcal Total: -11.57 6.37 -5.20 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_16982346_18051908.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.271 kcal (2) G-P(sol) polarization free energy of solvation -11.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds