Wall clock time and date at job start Fri Mar 5 2021 23:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35889 * 117.00117 * 2 1 4 4 C 1.38614 * 120.02995 * 0.26999 * 3 2 1 5 5 C 1.38659 * 119.89276 * 180.25282 * 4 3 2 6 6 O 1.35896 * 120.02741 * 179.75074 * 5 4 3 7 7 C 1.42896 * 116.99913 * 359.72322 * 6 5 4 8 8 C 1.53006 * 109.47051 * 180.02562 * 7 6 5 9 9 C 1.53571 * 109.12221 * 66.45352 * 8 7 6 10 10 C 1.55920 * 109.50277 * 169.52061 * 9 8 7 11 11 Si 1.89654 * 99.33841 * 319.37972 * 10 9 8 12 12 C 1.86301 * 111.45802 * 138.35691 * 11 10 9 13 13 C 1.86297 * 111.45852 * 263.30215 * 11 10 9 14 14 C 1.55354 * 109.09401 * 188.23816 * 8 7 6 15 15 C 1.38750 * 119.94280 * 359.47715 * 5 4 3 16 16 C 1.50703 * 119.96978 * 180.23334 * 15 5 4 17 17 O 1.42898 * 109.47459 * 75.00045 * 16 15 5 18 18 Si 1.86302 * 109.46551 * 194.99724 * 16 15 5 19 19 H 1.48497 * 109.47319 * 60.00376 * 18 16 15 20 20 H 1.48505 * 109.46738 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47561 * 299.99447 * 18 16 15 22 22 C 1.38199 * 120.05545 * 0.24596 * 15 5 4 23 23 C 1.38158 * 120.11035 * 0.03088 * 22 15 5 24 24 C 1.50696 * 119.97206 * 179.97438 * 23 22 15 25 25 H 1.08996 * 109.47444 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47415 * 300.00485 * 1 2 3 27 27 H 1.09006 * 109.46759 * 60.00312 * 1 2 3 28 28 H 1.08007 * 120.05240 * 359.97438 * 4 3 2 29 29 H 1.09007 * 109.47408 * 60.00607 * 7 6 5 30 30 H 1.08996 * 109.47383 * 299.99988 * 7 6 5 31 31 H 1.09001 * 109.01714 * 307.35249 * 8 7 6 32 32 H 1.08995 * 109.47161 * 49.49977 * 9 8 7 33 33 H 1.08992 * 109.43349 * 289.52246 * 9 8 7 34 34 H 1.08998 * 111.42335 * 201.85232 * 10 9 8 35 35 H 1.09003 * 111.42734 * 76.90862 * 10 9 8 36 36 H 1.09002 * 109.47148 * 185.06573 * 12 11 10 37 37 H 1.09001 * 109.46900 * 65.06725 * 12 11 10 38 38 H 1.09004 * 109.47198 * 305.06703 * 12 11 10 39 39 H 1.08995 * 109.47233 * 294.93193 * 13 11 10 40 40 H 1.08997 * 109.47080 * 54.93539 * 13 11 10 41 41 H 1.08998 * 109.47258 * 174.93150 * 13 11 10 42 42 H 1.08995 * 111.07416 * 92.91832 * 14 8 7 43 43 H 1.08996 * 111.09205 * 328.89439 * 14 8 7 44 44 H 1.08994 * 109.47096 * 314.99261 * 16 15 5 45 45 H 0.96699 * 114.00062 * 59.99487 * 17 16 15 46 46 H 1.07997 * 119.94717 * 180.02562 * 22 15 5 47 47 H 1.08999 * 109.47110 * 89.99877 * 24 23 22 48 48 H 1.09001 * 109.46799 * 209.99495 * 24 23 22 49 49 H 1.08999 * 109.47020 * 329.99651 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2916 2.3737 0.0057 5 6 1.9241 3.6076 0.0003 6 8 1.1872 4.7495 0.0007 7 6 -0.2343 4.6042 0.0006 8 6 -0.8884 5.9874 0.0005 9 6 -0.5793 6.6899 -1.3297 10 6 -1.4508 7.9769 -1.4535 11 14 -3.0844 7.3104 -0.7578 12 6 -3.9009 8.5489 0.3693 13 6 -4.2370 6.7746 -2.1198 14 6 -2.4191 5.8258 0.2107 15 6 3.3099 3.6756 0.0003 16 6 3.9979 5.0164 -0.0001 17 8 3.9052 5.5999 1.3010 18 14 5.7910 4.7939 -0.4546 19 1 5.8874 4.1877 -1.8067 20 1 6.4688 6.1153 -0.4556 21 1 6.4457 3.9021 0.5358 22 6 4.0598 2.5147 0.0005 23 6 3.4320 1.2840 0.0000 24 6 4.2527 0.0202 -0.0004 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.2130 2.3187 0.0096 29 1 -0.5436 4.0558 0.8905 30 1 -0.5435 4.0564 -0.8895 31 1 -0.4750 6.5758 0.8197 32 1 -0.8052 6.0171 -2.1569 33 1 0.4759 6.9612 -1.3599 34 1 -1.5577 8.2868 -2.4930 35 1 -1.0564 8.7855 -0.8382 36 1 -4.7867 8.1013 0.8200 37 1 -4.1908 9.4280 -0.2063 38 1 -3.2028 8.8420 1.1535 39 1 -4.5291 7.6425 -2.7110 40 1 -3.7315 6.0520 -2.7603 41 1 -5.1249 6.3158 -1.6848 42 1 -2.6795 5.8987 1.2666 43 1 -2.7767 4.8884 -0.2152 44 1 3.5174 5.6710 -0.7271 45 1 4.3130 5.0701 1.9996 46 1 5.1384 2.5696 0.0009 47 1 4.4506 -0.2849 1.0272 48 1 3.7041 -0.7691 -0.5145 49 1 5.1970 0.2003 -0.5141 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_7_17312810_18051908.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:54:46 Heat of formation + Delta-G solvation = -139.330152 kcal Electronic energy + Delta-G solvation = -26316.303561 eV Core-core repulsion = 22752.832459 eV Total energy + Delta-G solvation = -3563.471102 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.172 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.73854 -40.01688 -38.65913 -37.10873 -36.61898 -33.05432 -31.87497 -30.69605 -29.28266 -28.74751 -28.55319 -27.95692 -26.87975 -25.70784 -24.24920 -22.83693 -21.85994 -20.76016 -19.73062 -18.26131 -17.89360 -17.12477 -16.75288 -16.61140 -16.44519 -15.86598 -15.83866 -15.61035 -15.25956 -14.96941 -14.85904 -14.45741 -14.30031 -14.01716 -13.96334 -13.88052 -13.62411 -13.55520 -13.37913 -13.35073 -13.13057 -12.99060 -12.81395 -12.69714 -12.40115 -12.27591 -12.25390 -12.08860 -11.93777 -11.76571 -11.52153 -11.44072 -11.25189 -10.93251 -10.61725 -10.34776 -10.22480 -9.64619 -8.75782 0.26790 0.45272 1.25563 1.47652 1.53008 1.59595 1.81990 1.84209 1.98983 2.22636 2.26103 2.51573 2.64602 3.65133 3.67495 3.76619 3.84502 3.92459 3.95174 4.04300 4.09245 4.13840 4.18606 4.32127 4.40941 4.46405 4.48771 4.52337 4.56805 4.61228 4.64337 4.66026 4.67163 4.69135 4.70329 4.72208 4.78738 4.85376 5.05684 5.10149 5.12886 5.20804 5.30322 5.37405 5.37812 5.42693 5.46239 5.47614 5.49232 5.68777 6.21247 6.53197 6.73611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.172 3.828 4 C -0.297 4.297 5 C 0.194 3.806 6 O -0.296 6.296 7 C 0.063 3.937 8 C -0.079 4.079 9 C -0.112 4.112 10 C -0.397 4.397 11 Si 0.967 3.033 12 C -0.442 4.442 13 C -0.442 4.442 14 C -0.395 4.395 15 C -0.188 4.188 16 C -0.061 4.061 17 O -0.535 6.535 18 Si 0.944 3.056 19 H -0.249 1.249 20 H -0.253 1.253 21 H -0.252 1.252 22 C -0.054 4.054 23 C -0.150 4.150 24 C -0.102 4.102 25 H 0.103 0.897 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.136 0.864 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.114 0.886 45 H 0.371 0.629 46 H 0.135 0.865 47 H 0.067 0.933 48 H 0.070 0.930 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.736 -1.126 -0.301 2.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.222 6.222 3 C 0.126 3.874 4 C -0.317 4.317 5 C 0.147 3.853 6 O -0.209 6.209 7 C -0.012 4.012 8 C -0.097 4.097 9 C -0.149 4.149 10 C -0.483 4.483 11 Si 1.164 2.836 12 C -0.551 4.551 13 C -0.550 4.550 14 C -0.480 4.480 15 C -0.190 4.190 16 C -0.172 4.172 17 O -0.339 6.339 18 Si 0.767 3.233 19 H -0.172 1.172 20 H -0.177 1.177 21 H -0.176 1.176 22 C -0.072 4.072 23 C -0.151 4.151 24 C -0.159 4.159 25 H 0.122 0.878 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.154 0.846 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.132 0.868 45 H 0.218 0.782 46 H 0.152 0.848 47 H 0.086 0.914 48 H 0.089 0.911 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.092 -0.751 -0.866 2.386 hybrid contribution -0.673 -0.633 0.429 1.018 sum -2.764 -1.384 -0.437 3.122 Atomic orbital electron populations 1.23113 0.78116 1.04334 1.01411 1.86092 1.21535 1.26539 1.88002 1.18584 0.91512 0.83744 0.93555 1.21303 1.00617 0.91945 1.17805 1.18406 0.90307 0.84586 0.91953 1.86181 1.18975 1.28356 1.87352 1.23083 0.77979 0.99034 1.01119 1.21510 0.94373 0.94209 0.99628 1.21911 1.01236 0.95861 0.95930 1.26665 1.15269 1.00164 1.06204 0.80514 0.67882 0.67627 0.67536 1.26014 1.07472 1.11353 1.10223 1.26009 1.10346 1.05851 1.12778 1.26675 0.98597 1.14146 1.08631 1.19490 0.91023 0.96146 1.12311 1.24703 1.10016 0.93229 0.89236 1.86550 1.82382 1.48862 1.16137 0.85833 0.75409 0.80834 0.81249 1.17234 1.17710 1.17570 1.20668 0.99451 0.90420 0.96618 1.19069 0.90488 0.96050 1.09462 1.20567 0.98692 0.94247 1.02388 0.87831 0.92557 0.92566 0.84635 0.92083 0.92153 0.89715 0.91959 0.90847 0.90384 0.90271 0.91237 0.91071 0.90978 0.91054 0.91128 0.91163 0.89933 0.90298 0.86772 0.78229 0.84756 0.91398 0.91106 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 9.81 101.05 0.99 0.96 16 2 O -0.31 -0.65 9.54 -19.39 -0.18 -0.83 16 3 C 0.17 0.46 6.66 -39.24 -0.26 0.20 16 4 C -0.30 -0.63 8.02 -39.29 -0.32 -0.95 16 5 C 0.19 0.57 6.66 -39.24 -0.26 0.31 16 6 O -0.30 -0.84 9.23 -19.41 -0.18 -1.01 16 7 C 0.06 0.03 3.98 37.16 0.15 0.17 16 8 C -0.08 0.02 2.58 -89.07 -0.23 -0.20 16 9 C -0.11 0.01 5.06 -24.87 -0.13 -0.11 16 10 C -0.40 0.43 5.95 38.72 0.23 0.66 16 11 Si 0.97 -2.67 13.35 -169.99 -2.27 -4.94 16 12 C -0.44 0.74 8.65 101.05 0.87 1.61 16 13 C -0.44 0.83 8.65 101.05 0.87 1.71 16 14 C -0.40 0.77 5.28 38.41 0.20 0.97 16 15 C -0.19 -0.45 5.27 -104.45 -0.55 -1.00 16 16 C -0.06 -0.10 2.37 36.01 0.09 -0.01 16 17 O -0.53 -1.19 12.88 -35.23 -0.45 -1.64 16 18 Si 0.94 0.53 25.49 -169.99 -4.33 -3.81 16 19 H -0.25 -0.28 7.11 56.52 0.40 0.12 16 20 H -0.25 -0.47 7.11 56.52 0.40 -0.07 16 21 H -0.25 -0.02 6.73 56.52 0.38 0.36 16 22 C -0.05 -0.10 8.30 -39.63 -0.33 -0.43 16 23 C -0.15 -0.36 5.89 -104.45 -0.62 -0.97 16 24 C -0.10 -0.08 9.79 36.00 0.35 0.27 16 25 H 0.10 -0.30 8.14 -51.93 -0.42 -0.73 16 26 H 0.06 -0.11 7.65 -51.93 -0.40 -0.50 16 27 H 0.06 -0.11 7.67 -51.93 -0.40 -0.51 16 28 H 0.14 0.03 4.54 -52.48 -0.24 -0.20 16 29 H 0.06 0.00 7.64 -51.92 -0.40 -0.40 16 30 H 0.06 -0.03 7.60 -51.93 -0.39 -0.42 16 31 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 32 H 0.06 -0.03 8.05 -51.93 -0.42 -0.45 16 33 H 0.07 0.09 8.11 -51.93 -0.42 -0.33 16 34 H 0.08 -0.09 8.06 -51.93 -0.42 -0.51 16 35 H 0.08 -0.06 8.06 -51.93 -0.42 -0.48 16 36 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 37 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 38 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 39 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 40 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 41 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 42 H 0.08 -0.17 8.04 -51.93 -0.42 -0.59 16 43 H 0.08 -0.19 7.85 -51.93 -0.41 -0.60 16 44 H 0.11 0.19 7.82 -51.93 -0.41 -0.21 16 45 H 0.37 -0.41 8.70 45.56 0.40 -0.01 16 46 H 0.14 0.02 4.88 -52.49 -0.26 -0.24 16 47 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 48 H 0.07 0.08 7.53 -51.93 -0.39 -0.31 16 49 H 0.06 -0.02 8.08 -51.93 -0.42 -0.44 16 LS Contribution 386.83 15.07 5.83 5.83 Total: 0.00 -5.23 386.83 -8.49 -13.72 By element: Atomic # 1 Polarization: -2.54 SS G_CDS: -7.97 Total: -10.50 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 1.07 Total: 3.19 kcal Atomic # 8 Polarization: -2.67 SS G_CDS: -0.82 Total: -3.49 kcal Atomic # 14 Polarization: -2.14 SS G_CDS: -6.60 Total: -8.74 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -5.23 -8.49 -13.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_17312810_18051908.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.611 kcal (2) G-P(sol) polarization free energy of solvation -5.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds