Wall clock time and date at job start Fri Mar 5 2021 23:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35889 * 117.00117 * 2 1 4 4 C 1.38614 * 120.02995 * 0.26999 * 3 2 1 5 5 C 1.38659 * 119.89276 * 180.25282 * 4 3 2 6 6 O 1.35896 * 120.02741 * 179.75074 * 5 4 3 7 7 C 1.42896 * 116.99913 * 359.72322 * 6 5 4 8 8 C 1.53006 * 109.47051 * 180.02562 * 7 6 5 9 9 C 1.53571 * 109.12221 * 66.45352 * 8 7 6 10 10 C 1.55920 * 109.50277 * 169.52061 * 9 8 7 11 11 Si 1.89654 * 99.33841 * 319.37972 * 10 9 8 12 12 C 1.86301 * 111.45802 * 138.35691 * 11 10 9 13 13 C 1.86297 * 111.45852 * 263.30215 * 11 10 9 14 14 C 1.55354 * 109.09401 * 188.23816 * 8 7 6 15 15 C 1.38750 * 119.94280 * 359.47715 * 5 4 3 16 16 C 1.50703 * 119.96978 * 180.23334 * 15 5 4 17 17 O 1.42898 * 109.47459 * 75.00045 * 16 15 5 18 18 Si 1.86302 * 109.46551 * 194.99724 * 16 15 5 19 19 H 1.48497 * 109.47319 * 60.00376 * 18 16 15 20 20 H 1.48505 * 109.46738 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47561 * 299.99447 * 18 16 15 22 22 C 1.38199 * 120.05545 * 0.24596 * 15 5 4 23 23 C 1.38158 * 120.11035 * 0.03088 * 22 15 5 24 24 C 1.50696 * 119.97206 * 179.97438 * 23 22 15 25 25 H 1.08996 * 109.47444 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47415 * 300.00485 * 1 2 3 27 27 H 1.09006 * 109.46759 * 60.00312 * 1 2 3 28 28 H 1.08007 * 120.05240 * 359.97438 * 4 3 2 29 29 H 1.09007 * 109.47408 * 60.00607 * 7 6 5 30 30 H 1.08996 * 109.47383 * 299.99988 * 7 6 5 31 31 H 1.09001 * 109.01714 * 307.35249 * 8 7 6 32 32 H 1.08995 * 109.47161 * 49.49977 * 9 8 7 33 33 H 1.08992 * 109.43349 * 289.52246 * 9 8 7 34 34 H 1.08998 * 111.42335 * 201.85232 * 10 9 8 35 35 H 1.09003 * 111.42734 * 76.90862 * 10 9 8 36 36 H 1.09002 * 109.47148 * 185.06573 * 12 11 10 37 37 H 1.09001 * 109.46900 * 65.06725 * 12 11 10 38 38 H 1.09004 * 109.47198 * 305.06703 * 12 11 10 39 39 H 1.08995 * 109.47233 * 294.93193 * 13 11 10 40 40 H 1.08997 * 109.47080 * 54.93539 * 13 11 10 41 41 H 1.08998 * 109.47258 * 174.93150 * 13 11 10 42 42 H 1.08995 * 111.07416 * 92.91832 * 14 8 7 43 43 H 1.08996 * 111.09205 * 328.89439 * 14 8 7 44 44 H 1.08994 * 109.47096 * 314.99261 * 16 15 5 45 45 H 0.96699 * 114.00062 * 59.99487 * 17 16 15 46 46 H 1.07997 * 119.94717 * 180.02562 * 22 15 5 47 47 H 1.08999 * 109.47110 * 89.99877 * 24 23 22 48 48 H 1.09001 * 109.46799 * 209.99495 * 24 23 22 49 49 H 1.08999 * 109.47020 * 329.99651 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2916 2.3737 0.0057 5 6 1.9241 3.6076 0.0003 6 8 1.1872 4.7495 0.0007 7 6 -0.2343 4.6042 0.0006 8 6 -0.8884 5.9874 0.0005 9 6 -0.5793 6.6899 -1.3297 10 6 -1.4508 7.9769 -1.4535 11 14 -3.0844 7.3104 -0.7578 12 6 -3.9009 8.5489 0.3693 13 6 -4.2370 6.7746 -2.1198 14 6 -2.4191 5.8258 0.2107 15 6 3.3099 3.6756 0.0003 16 6 3.9979 5.0164 -0.0001 17 8 3.9052 5.5999 1.3010 18 14 5.7910 4.7939 -0.4546 19 1 5.8874 4.1877 -1.8067 20 1 6.4688 6.1153 -0.4556 21 1 6.4457 3.9021 0.5358 22 6 4.0598 2.5147 0.0005 23 6 3.4320 1.2840 0.0000 24 6 4.2527 0.0202 -0.0004 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.2130 2.3187 0.0096 29 1 -0.5436 4.0558 0.8905 30 1 -0.5435 4.0564 -0.8895 31 1 -0.4750 6.5758 0.8197 32 1 -0.8052 6.0171 -2.1569 33 1 0.4759 6.9612 -1.3599 34 1 -1.5577 8.2868 -2.4930 35 1 -1.0564 8.7855 -0.8382 36 1 -4.7867 8.1013 0.8200 37 1 -4.1908 9.4280 -0.2063 38 1 -3.2028 8.8420 1.1535 39 1 -4.5291 7.6425 -2.7110 40 1 -3.7315 6.0520 -2.7603 41 1 -5.1249 6.3158 -1.6848 42 1 -2.6795 5.8987 1.2666 43 1 -2.7767 4.8884 -0.2152 44 1 3.5174 5.6710 -0.7271 45 1 4.3130 5.0701 1.9996 46 1 5.1384 2.5696 0.0009 47 1 4.4506 -0.2849 1.0272 48 1 3.7041 -0.7691 -0.5145 49 1 5.1970 0.2003 -0.5141 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_17312810_18051908.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:54:46 Heat of formation + Delta-G solvation = -130.561098 kcal Electronic energy + Delta-G solvation = -26315.923306 eV Core-core repulsion = 22752.832459 eV Total energy + Delta-G solvation = -3563.090847 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.172 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.83694 -40.09442 -38.74166 -37.21680 -36.63181 -33.14029 -31.98697 -30.65653 -29.12468 -28.69120 -28.38630 -27.97056 -26.91330 -25.78116 -24.22400 -22.89862 -21.97124 -20.74548 -19.81572 -18.36128 -17.98413 -17.19543 -16.81913 -16.64925 -16.52327 -15.92515 -15.88458 -15.63821 -15.33063 -15.04565 -14.85386 -14.45813 -14.28439 -13.94970 -13.85302 -13.79521 -13.54009 -13.43040 -13.37703 -13.20605 -13.12648 -12.98004 -12.82583 -12.65086 -12.38890 -12.27392 -12.23617 -12.17125 -12.01154 -11.76987 -11.58660 -11.46732 -11.29321 -10.77539 -10.48179 -10.33427 -10.25458 -9.76114 -8.88578 0.14536 0.30750 1.17918 1.42855 1.53077 1.68387 1.90916 1.99859 2.03924 2.19020 2.24768 2.51647 2.64031 3.58167 3.61609 3.74760 3.79288 3.88442 3.93859 4.05480 4.06696 4.25234 4.28615 4.29214 4.36884 4.43468 4.53466 4.57062 4.61420 4.64953 4.65160 4.69452 4.74809 4.81034 4.82665 4.83404 4.84536 4.85466 5.03467 5.12099 5.15228 5.15556 5.26212 5.33368 5.37071 5.47286 5.51485 5.58757 5.61396 5.64050 6.15034 6.44007 6.76026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.323 6.323 3 C 0.160 3.840 4 C -0.299 4.299 5 C 0.177 3.823 6 O -0.312 6.312 7 C 0.058 3.942 8 C -0.078 4.078 9 C -0.113 4.113 10 C -0.415 4.415 11 Si 1.041 2.959 12 C -0.457 4.457 13 C -0.453 4.453 14 C -0.401 4.401 15 C -0.198 4.198 16 C -0.066 4.066 17 O -0.552 6.552 18 Si 0.981 3.019 19 H -0.256 1.256 20 H -0.274 1.274 21 H -0.238 1.238 22 C -0.056 4.056 23 C -0.163 4.163 24 C -0.101 4.101 25 H 0.120 0.880 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.150 0.850 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.105 0.895 45 H 0.384 0.616 46 H 0.150 0.850 47 H 0.072 0.928 48 H 0.065 0.935 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.357 -1.864 -0.217 3.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.236 6.236 3 C 0.114 3.886 4 C -0.318 4.318 5 C 0.131 3.869 6 O -0.225 6.225 7 C -0.017 4.017 8 C -0.096 4.096 9 C -0.151 4.151 10 C -0.500 4.500 11 Si 1.234 2.766 12 C -0.564 4.564 13 C -0.561 4.561 14 C -0.486 4.486 15 C -0.199 4.199 16 C -0.176 4.176 17 O -0.359 6.359 18 Si 0.804 3.196 19 H -0.180 1.180 20 H -0.199 1.199 21 H -0.162 1.162 22 C -0.074 4.074 23 C -0.164 4.164 24 C -0.158 4.158 25 H 0.138 0.862 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.168 0.832 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.123 0.877 45 H 0.233 0.767 46 H 0.168 0.832 47 H 0.091 0.909 48 H 0.084 0.916 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.713 -1.498 -0.769 3.193 hybrid contribution -0.516 -0.383 0.402 0.758 sum -3.229 -1.880 -0.367 3.754 Atomic orbital electron populations 1.23356 0.76594 1.05723 1.02072 1.86073 1.23216 1.26342 1.87968 1.18772 0.91924 0.84124 0.93806 1.21446 1.01415 0.91538 1.17417 1.18640 0.90775 0.84930 0.92592 1.86172 1.20122 1.28696 1.87484 1.23264 0.77018 0.99647 1.01774 1.21514 0.95567 0.93641 0.98904 1.21911 1.00228 0.96578 0.96378 1.26900 1.17024 0.99597 1.06444 0.79414 0.65484 0.65816 0.65882 1.26190 1.07768 1.11904 1.10573 1.26138 1.10795 1.05958 1.13164 1.26799 0.97066 1.15367 1.09352 1.19675 0.91170 0.96646 1.12417 1.24843 1.11164 0.92717 0.88864 1.86507 1.82860 1.49660 1.16849 0.85300 0.73676 0.79694 0.80937 1.17961 1.19869 1.16157 1.20840 1.00200 0.90042 0.96282 1.19370 0.90846 0.96806 1.09386 1.20588 0.98958 0.93421 1.02787 0.86156 0.91923 0.91846 0.83225 0.91573 0.91205 0.90980 0.91444 0.92959 0.90327 0.90931 0.90871 0.91141 0.91357 0.91113 0.91127 0.90743 0.89441 0.89240 0.87733 0.76723 0.83248 0.90938 0.91606 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.32 -1.39 9.54 -92.31 -0.88 -2.27 16 3 C 0.16 0.93 6.66 22.49 0.15 1.08 16 4 C -0.30 -1.43 8.02 22.46 0.18 -1.25 16 5 C 0.18 1.24 6.66 22.49 0.15 1.39 16 6 O -0.31 -2.21 9.23 -92.38 -0.85 -3.06 16 7 C 0.06 0.09 3.98 71.98 0.29 0.37 16 8 C -0.08 -0.01 2.58 -9.79 -0.03 -0.04 16 9 C -0.11 -0.12 5.06 31.80 0.16 0.04 16 10 C -0.42 0.56 5.95 72.99 0.43 0.99 16 11 Si 1.04 -6.14 13.35 68.60 0.92 -5.22 16 12 C -0.46 1.67 8.65 113.37 0.98 2.65 16 13 C -0.45 2.09 8.65 113.37 0.98 3.07 16 14 C -0.40 1.76 5.28 72.79 0.38 2.15 16 15 C -0.20 -1.13 5.27 -19.75 -0.10 -1.24 16 16 C -0.07 -0.29 2.37 71.24 0.17 -0.12 16 17 O -0.55 -3.07 12.88 -148.98 -1.92 -4.99 16 18 Si 0.98 1.29 25.49 68.60 1.75 3.03 16 19 H -0.26 -0.59 7.11 99.48 0.71 0.11 16 20 H -0.27 -1.24 7.11 99.48 0.71 -0.53 16 21 H -0.24 0.23 6.73 99.48 0.67 0.90 16 22 C -0.06 -0.22 8.30 22.24 0.18 -0.03 16 23 C -0.16 -0.82 5.89 -19.75 -0.12 -0.94 16 24 C -0.10 -0.15 9.79 71.23 0.70 0.54 16 25 H 0.12 -0.80 8.14 -2.39 -0.02 -0.82 16 26 H 0.06 -0.27 7.65 -2.39 -0.02 -0.28 16 27 H 0.06 -0.28 7.67 -2.38 -0.02 -0.30 16 28 H 0.15 0.09 4.54 -2.91 -0.01 0.08 16 29 H 0.07 0.01 7.64 -2.38 -0.02 -0.01 16 30 H 0.07 -0.06 7.60 -2.39 -0.02 -0.07 16 31 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.07 -0.02 8.05 -2.39 -0.02 -0.04 16 33 H 0.05 0.26 8.11 -2.39 -0.02 0.24 16 34 H 0.08 -0.13 8.06 -2.39 -0.02 -0.15 16 35 H 0.07 -0.01 8.06 -2.39 -0.02 -0.03 16 36 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 37 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 38 H 0.07 -0.18 7.96 -2.38 -0.02 -0.20 16 39 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 40 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 41 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 42 H 0.09 -0.43 8.04 -2.39 -0.02 -0.45 16 43 H 0.09 -0.55 7.85 -2.39 -0.02 -0.57 16 44 H 0.10 0.57 7.82 -2.39 -0.02 0.56 16 45 H 0.38 -0.57 8.70 -74.06 -0.64 -1.22 16 46 H 0.15 -0.03 4.88 -2.91 -0.01 -0.05 16 47 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 48 H 0.06 0.16 7.53 -2.39 -0.02 0.15 16 49 H 0.08 -0.11 8.08 -2.39 -0.02 -0.13 16 Total: 0.00 -12.66 386.83 5.63 -7.02 By element: Atomic # 1 Polarization: -5.25 SS G_CDS: 1.00 Total: -4.26 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 5.62 Total: 9.75 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -3.65 Total: -10.33 kcal Atomic # 14 Polarization: -4.85 SS G_CDS: 2.66 Total: -2.19 kcal Total: -12.66 5.63 -7.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_17312810_18051908.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.539 kcal (2) G-P(sol) polarization free energy of solvation -12.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds