Wall clock time and date at job start Sat Mar 6 2021 00:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 C 1.52997 * 109.47461 * 190.98498 * 6 5 4 8 8 O 1.42900 * 109.47199 * 293.54574 * 7 6 5 9 9 C 1.35959 * 116.99883 * 179.97438 * 8 7 6 10 10 C 1.38633 * 120.05790 * 269.72271 * 9 8 7 11 11 C 1.50705 * 120.00374 * 0.02562 * 10 9 8 12 12 O 1.42898 * 109.47203 * 285.00037 * 11 10 9 13 13 Si 1.86300 * 109.47369 * 165.00028 * 11 10 9 14 14 H 1.48504 * 109.47063 * 59.99738 * 13 11 10 15 15 H 1.48488 * 109.47280 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46811 * 300.00500 * 13 11 10 17 17 C 1.38227 * 119.99515 * 179.77089 * 10 9 8 18 18 C 1.38208 * 120.10200 * 0.53047 * 17 10 9 19 19 C 1.38411 * 120.11178 * 359.70072 * 18 17 10 20 20 Cl 1.73604 * 119.99590 * 180.02562 * 19 18 17 21 21 C 1.38396 * 120.00759 * 0.04820 * 19 18 17 22 22 F 1.35092 * 120.05288 * 179.97438 * 21 19 18 23 23 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 24 24 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 25 25 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 26 26 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 28 28 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 30 30 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 31 31 H 1.08999 * 111.05229 * 356.11516 * 4 2 1 32 32 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 33 33 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 34 34 H 1.09006 * 109.47935 * 70.98593 * 6 5 4 35 35 H 1.09007 * 109.47372 * 53.54666 * 7 6 5 36 36 H 1.09000 * 109.47544 * 173.54435 * 7 6 5 37 37 H 1.09007 * 109.47019 * 45.00054 * 11 10 9 38 38 H 0.96697 * 113.99957 * 299.99950 * 12 11 10 39 39 H 1.07996 * 119.94888 * 180.22799 * 17 10 9 40 40 H 1.07994 * 119.94353 * 179.72065 * 18 17 10 41 41 H 1.08996 * 111.41269 * 283.05303 * 23 6 5 42 42 H 1.09006 * 111.49251 * 158.06559 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1406 -2.9773 -1.5071 8 8 5.3013 -3.5605 -0.9116 9 6 5.8082 -4.6724 -1.5074 10 6 5.3714 -5.9292 -1.1181 11 6 4.3334 -6.0639 -0.0338 12 8 4.9359 -5.8093 1.2367 13 14 3.6340 -7.7904 -0.0546 14 1 4.7254 -8.7696 0.1807 15 1 2.6108 -7.9229 1.0133 16 1 3.0079 -8.0550 -1.3750 17 6 5.8842 -7.0587 -1.7281 18 6 6.8404 -6.9379 -2.7187 19 6 7.2831 -5.6855 -3.1075 20 17 8.4838 -5.5372 -4.3526 21 6 6.7690 -4.5513 -2.5034 22 9 7.2008 -3.3285 -2.8818 23 6 2.5568 -1.0142 -1.4447 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 2.1907 2.2612 0.8899 28 1 3.6274 1.7027 -0.0005 29 1 2.1908 2.2612 -0.8900 30 1 3.2797 -0.4330 2.0151 31 1 1.7543 -1.3786 2.0840 32 1 4.1055 -2.5196 1.2701 33 1 2.5407 -3.0054 0.5873 34 1 4.5681 -1.0687 -0.6043 35 1 3.3289 -3.7048 -1.5092 36 1 4.3671 -2.6827 -2.5318 37 1 3.5323 -5.3452 -0.2066 38 1 5.6587 -6.4126 1.4571 39 1 5.5407 -8.0372 -1.4267 40 1 7.2425 -7.8222 -3.1904 41 1 1.8198 -1.7216 -1.8246 42 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_7_18323484_18051908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:03:49 Heat of formation + Delta-G solvation = -144.779788 kcal Electronic energy + Delta-G solvation = -24851.291308 eV Core-core repulsion = 21088.087554 eV Total energy + Delta-G solvation = -3763.203754 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 332.092 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.99040 -41.36487 -39.12391 -38.00414 -37.30615 -36.53275 -32.48673 -31.46007 -30.38172 -29.23974 -28.51410 -27.49398 -26.58493 -24.14019 -23.82242 -23.00420 -20.80584 -19.48295 -18.77261 -18.40603 -17.56302 -17.26923 -16.62913 -16.43002 -16.18867 -15.93834 -15.85565 -15.32985 -15.12529 -14.64161 -14.47036 -14.15515 -14.00488 -13.96403 -13.92458 -13.68044 -13.59679 -13.52030 -13.32551 -13.25936 -12.66388 -12.49078 -12.37823 -12.26895 -12.17962 -12.12158 -11.94108 -11.76955 -11.37633 -11.08005 -10.88710 -10.58007 -10.50276 -10.31073 -9.92189 -9.88179 -0.41329 -0.29592 0.82567 0.96038 1.26225 1.37438 1.57508 1.77089 1.86117 1.87608 1.93080 2.45760 2.57351 2.87706 3.30442 3.41106 3.57148 3.72612 3.81760 3.94082 4.01611 4.18099 4.24952 4.42832 4.46583 4.52207 4.60842 4.62188 4.66609 4.68500 4.70641 4.72587 4.74237 4.75219 4.78810 4.91390 5.09613 5.16131 5.18514 5.41755 5.42617 5.50505 5.51944 5.54573 6.31811 6.47010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.441 4.441 2 Si 0.966 3.034 3 C -0.442 4.442 4 C -0.397 4.397 5 C -0.107 4.107 6 C -0.081 4.081 7 C 0.071 3.929 8 O -0.312 6.312 9 C 0.108 3.892 10 C -0.111 4.111 11 C -0.075 4.075 12 O -0.524 6.524 13 Si 0.944 3.056 14 H -0.246 1.246 15 H -0.246 1.246 16 H -0.245 1.245 17 C -0.113 4.113 18 C -0.082 4.082 19 C -0.060 4.060 20 Cl -0.037 7.037 21 C 0.091 3.909 22 F -0.116 7.116 23 C -0.394 4.394 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.117 0.883 38 H 0.375 0.625 39 H 0.144 0.856 40 H 0.152 0.848 41 H 0.081 0.919 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.829 -2.353 0.038 3.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.550 4.550 2 Si 1.164 2.836 3 C -0.551 4.551 4 C -0.483 4.483 5 C -0.145 4.145 6 C -0.100 4.100 7 C -0.003 4.003 8 O -0.229 6.229 9 C 0.062 3.938 10 C -0.112 4.112 11 C -0.185 4.185 12 O -0.328 6.328 13 Si 0.765 3.235 14 H -0.170 1.170 15 H -0.170 1.170 16 H -0.169 1.169 17 C -0.132 4.132 18 C -0.101 4.101 19 C -0.088 4.088 20 Cl -0.008 7.008 21 C 0.070 3.930 22 F -0.094 7.094 23 C -0.479 4.479 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.135 0.865 38 H 0.222 0.778 39 H 0.162 0.838 40 H 0.169 0.831 41 H 0.100 0.900 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.459 -2.506 0.069 4.272 hybrid contribution 0.976 0.122 -0.563 1.134 sum -2.483 -2.384 -0.494 3.477 Atomic orbital electron populations 1.26006 1.19927 1.04559 1.04466 0.80531 0.67408 0.67613 0.68081 1.26014 1.06706 1.17863 1.04471 1.26497 1.05479 1.06360 1.10011 1.21690 1.00871 0.97869 0.94051 1.21687 0.98573 0.94994 0.94738 1.23056 0.85558 0.94905 0.96736 1.86172 1.45366 1.39340 1.51999 1.18238 0.95036 0.87687 0.92849 1.20714 0.99465 0.91958 0.99035 1.24976 0.96906 1.13720 0.82945 1.86607 1.53585 1.60251 1.32375 0.85791 0.81015 0.74452 0.82211 1.17004 1.16992 1.16857 1.21090 0.97142 0.98538 0.96389 1.20984 0.96462 0.95728 0.96896 1.20989 0.97434 0.93856 0.96503 1.98425 1.53740 1.98240 1.50430 1.17871 0.98428 0.80241 0.96473 1.91567 1.88016 1.39942 1.89861 1.26844 1.02697 1.07812 1.10565 0.91192 0.91129 0.91061 0.91079 0.91017 0.91210 0.90566 0.90389 0.90756 0.92139 0.89775 0.92453 0.92523 0.86523 0.77764 0.83822 0.83072 0.90043 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.73 8.65 101.05 0.87 1.61 16 2 Si 0.97 -2.35 13.35 -169.99 -2.27 -4.62 16 3 C -0.44 0.56 8.65 101.05 0.87 1.44 16 4 C -0.40 0.31 5.85 38.29 0.22 0.54 16 5 C -0.11 -0.02 5.21 -25.30 -0.13 -0.16 16 6 C -0.08 0.00 2.40 -88.69 -0.21 -0.21 16 7 C 0.07 0.05 5.20 37.16 0.19 0.25 16 8 O -0.31 -0.84 9.07 -19.61 -0.18 -1.02 16 9 C 0.11 0.22 5.70 -39.18 -0.22 0.00 16 10 C -0.11 0.00 5.27 -104.48 -0.55 -0.55 16 11 C -0.08 0.07 2.38 36.01 0.09 0.15 16 12 O -0.52 0.00 12.88 -35.23 -0.45 -0.46 16 13 Si 0.94 -1.81 25.48 -169.99 -4.33 -6.14 16 14 H -0.25 0.60 6.74 56.52 0.38 0.98 16 15 H -0.25 0.09 7.11 56.52 0.40 0.49 16 16 H -0.25 0.38 7.11 56.52 0.40 0.78 16 17 C -0.11 0.16 8.65 -39.60 -0.34 -0.19 16 18 C -0.08 0.07 9.83 -39.53 -0.39 -0.32 16 19 C -0.06 -0.08 6.32 -39.46 -0.25 -0.33 16 20 Cl -0.04 -0.06 28.61 -51.86 -1.48 -1.55 16 21 C 0.09 0.24 7.28 -39.27 -0.29 -0.04 16 22 F -0.12 -0.49 16.68 2.25 0.04 -0.46 16 23 C -0.39 0.61 5.30 38.80 0.21 0.82 16 24 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 25 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 26 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 27 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 28 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 29 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 30 H 0.08 -0.03 8.04 -51.93 -0.42 -0.45 16 31 H 0.08 -0.07 8.04 -51.93 -0.42 -0.49 16 32 H 0.07 0.15 8.12 -51.93 -0.42 -0.27 16 33 H 0.06 -0.01 8.04 -51.93 -0.42 -0.43 16 34 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 35 H 0.06 -0.04 7.06 -51.93 -0.37 -0.40 16 36 H 0.06 0.04 8.14 -51.93 -0.42 -0.38 16 37 H 0.12 -0.13 6.58 -51.93 -0.34 -0.47 16 38 H 0.38 -1.26 8.70 45.56 0.40 -0.86 16 39 H 0.14 -0.49 4.88 -52.49 -0.26 -0.75 16 40 H 0.15 -0.47 8.06 -52.49 -0.42 -0.90 16 41 H 0.08 -0.16 8.03 -51.93 -0.42 -0.58 16 42 H 0.08 -0.14 8.06 -51.93 -0.42 -0.55 16 LS Contribution 361.40 15.07 5.45 5.45 Total: 0.00 -4.70 361.40 -8.81 -13.51 By element: Atomic # 1 Polarization: -2.08 SS G_CDS: -5.64 Total: -7.72 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 0.07 Total: 3.01 kcal Atomic # 8 Polarization: -0.84 SS G_CDS: -0.63 Total: -1.48 kcal Atomic # 9 Polarization: -0.49 SS G_CDS: 0.04 Total: -0.46 kcal Atomic # 14 Polarization: -4.16 SS G_CDS: -6.60 Total: -10.76 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.48 Total: -1.55 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -4.70 -8.81 -13.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_18323484_18051908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.271 kcal (2) G-P(sol) polarization free energy of solvation -4.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds