Wall clock time and date at job start Sat Mar 6 2021 00:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 C 1.52997 * 109.47461 * 190.98498 * 6 5 4 8 8 O 1.42900 * 109.47199 * 293.54574 * 7 6 5 9 9 C 1.35959 * 116.99883 * 179.97438 * 8 7 6 10 10 C 1.38633 * 120.05790 * 269.72271 * 9 8 7 11 11 C 1.50705 * 120.00374 * 0.02562 * 10 9 8 12 12 O 1.42898 * 109.47203 * 285.00037 * 11 10 9 13 13 Si 1.86300 * 109.47369 * 165.00028 * 11 10 9 14 14 H 1.48504 * 109.47063 * 59.99738 * 13 11 10 15 15 H 1.48488 * 109.47280 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46811 * 300.00500 * 13 11 10 17 17 C 1.38227 * 119.99515 * 179.77089 * 10 9 8 18 18 C 1.38208 * 120.10200 * 0.53047 * 17 10 9 19 19 C 1.38411 * 120.11178 * 359.70072 * 18 17 10 20 20 Cl 1.73604 * 119.99590 * 180.02562 * 19 18 17 21 21 C 1.38396 * 120.00759 * 0.04820 * 19 18 17 22 22 F 1.35092 * 120.05288 * 179.97438 * 21 19 18 23 23 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 24 24 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 25 25 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 26 26 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 28 28 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 30 30 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 31 31 H 1.08999 * 111.05229 * 356.11516 * 4 2 1 32 32 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 33 33 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 34 34 H 1.09006 * 109.47935 * 70.98593 * 6 5 4 35 35 H 1.09007 * 109.47372 * 53.54666 * 7 6 5 36 36 H 1.09000 * 109.47544 * 173.54435 * 7 6 5 37 37 H 1.09007 * 109.47019 * 45.00054 * 11 10 9 38 38 H 0.96697 * 113.99957 * 299.99950 * 12 11 10 39 39 H 1.07996 * 119.94888 * 180.22799 * 17 10 9 40 40 H 1.07994 * 119.94353 * 179.72065 * 18 17 10 41 41 H 1.08996 * 111.41269 * 283.05303 * 23 6 5 42 42 H 1.09006 * 111.49251 * 158.06559 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1406 -2.9773 -1.5071 8 8 5.3013 -3.5605 -0.9116 9 6 5.8082 -4.6724 -1.5074 10 6 5.3714 -5.9292 -1.1181 11 6 4.3334 -6.0639 -0.0338 12 8 4.9359 -5.8093 1.2367 13 14 3.6340 -7.7904 -0.0546 14 1 4.7254 -8.7696 0.1807 15 1 2.6108 -7.9229 1.0133 16 1 3.0079 -8.0550 -1.3750 17 6 5.8842 -7.0587 -1.7281 18 6 6.8404 -6.9379 -2.7187 19 6 7.2831 -5.6855 -3.1075 20 17 8.4838 -5.5372 -4.3526 21 6 6.7690 -4.5513 -2.5034 22 9 7.2008 -3.3285 -2.8818 23 6 2.5568 -1.0142 -1.4447 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 2.1907 2.2612 0.8899 28 1 3.6274 1.7027 -0.0005 29 1 2.1908 2.2612 -0.8900 30 1 3.2797 -0.4330 2.0151 31 1 1.7543 -1.3786 2.0840 32 1 4.1055 -2.5196 1.2701 33 1 2.5407 -3.0054 0.5873 34 1 4.5681 -1.0687 -0.6043 35 1 3.3289 -3.7048 -1.5092 36 1 4.3671 -2.6827 -2.5318 37 1 3.5323 -5.3452 -0.2066 38 1 5.6587 -6.4126 1.4571 39 1 5.5407 -8.0372 -1.4267 40 1 7.2425 -7.8222 -3.1904 41 1 1.8198 -1.7216 -1.8246 42 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_18323484_18051908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:03:49 Heat of formation + Delta-G solvation = -135.167885 kcal Electronic energy + Delta-G solvation = -24850.874505 eV Core-core repulsion = 21088.087554 eV Total energy + Delta-G solvation = -3762.786951 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 332.092 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.19437 -41.39543 -39.17125 -38.02654 -37.31825 -36.55393 -32.49219 -31.47539 -30.37099 -29.11501 -28.38000 -27.46358 -26.56006 -24.14178 -23.83979 -23.01100 -20.81468 -19.53032 -18.81199 -18.47266 -17.57898 -17.37811 -16.67368 -16.45645 -16.21731 -15.94032 -15.79846 -15.37305 -15.07674 -14.65790 -14.48343 -14.13435 -14.02677 -13.85616 -13.80443 -13.65082 -13.55713 -13.43240 -13.25823 -13.15632 -12.62192 -12.47969 -12.36971 -12.20404 -12.12783 -12.09584 -11.93945 -11.67787 -11.39723 -11.13265 -10.76810 -10.48315 -10.43241 -10.25770 -9.97264 -9.91576 -0.43186 -0.32455 0.75717 1.09319 1.44047 1.53645 1.69345 1.92089 1.93087 2.00523 2.04976 2.44171 2.64835 2.82701 3.35007 3.51046 3.64532 3.74563 3.82477 3.97311 4.00334 4.15347 4.26476 4.41994 4.47301 4.57025 4.59884 4.64495 4.71127 4.75864 4.78150 4.80764 4.82454 4.86481 4.87420 4.93710 5.12431 5.21670 5.23792 5.38779 5.49887 5.54165 5.59889 5.64947 6.24984 6.69829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.451 4.451 2 Si 1.040 2.960 3 C -0.458 4.458 4 C -0.414 4.414 5 C -0.105 4.105 6 C -0.082 4.082 7 C 0.067 3.933 8 O -0.330 6.330 9 C 0.091 3.909 10 C -0.109 4.109 11 C -0.084 4.084 12 O -0.543 6.543 13 Si 0.982 3.018 14 H -0.228 1.228 15 H -0.272 1.272 16 H -0.246 1.246 17 C -0.103 4.103 18 C -0.074 4.074 19 C -0.068 4.068 20 Cl -0.046 7.046 21 C 0.064 3.936 22 F -0.134 7.134 23 C -0.402 4.402 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.112 0.888 38 H 0.389 0.611 39 H 0.172 0.828 40 H 0.179 0.821 41 H 0.090 0.910 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.702 -3.759 -0.161 5.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 Si 1.233 2.767 3 C -0.565 4.565 4 C -0.499 4.499 5 C -0.142 4.142 6 C -0.101 4.101 7 C -0.006 4.006 8 O -0.247 6.247 9 C 0.046 3.954 10 C -0.110 4.110 11 C -0.193 4.193 12 O -0.350 6.350 13 Si 0.802 3.198 14 H -0.151 1.151 15 H -0.197 1.197 16 H -0.169 1.169 17 C -0.121 4.121 18 C -0.093 4.093 19 C -0.096 4.096 20 Cl -0.017 7.017 21 C 0.044 3.956 22 F -0.112 7.112 23 C -0.486 4.486 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.130 0.870 38 H 0.238 0.762 39 H 0.189 0.811 40 H 0.196 0.804 41 H 0.109 0.891 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.294 -3.913 -0.127 5.811 hybrid contribution 1.251 0.558 -0.450 1.442 sum -3.043 -3.355 -0.577 4.567 Atomic orbital electron populations 1.26107 1.20290 1.04792 1.04667 0.79439 0.66191 0.65537 0.65559 1.26207 1.06475 1.19187 1.04656 1.26717 1.05516 1.06534 1.11089 1.21648 1.00094 0.98510 0.93978 1.21703 0.98853 0.94683 0.94850 1.23182 0.85508 0.95459 0.96484 1.86146 1.46069 1.39979 1.52526 1.18480 0.95418 0.88304 0.93209 1.20896 0.99490 0.91565 0.99093 1.25233 0.96531 1.15218 0.82284 1.86575 1.54328 1.61283 1.32794 0.85269 0.80375 0.73059 0.81069 1.15137 1.19653 1.16907 1.21396 0.96135 0.99137 0.95385 1.21335 0.95838 0.95626 0.96467 1.21145 0.97570 0.94318 0.96519 1.98417 1.54140 1.98316 1.50805 1.18169 0.99637 0.80090 0.97723 1.91507 1.88396 1.41116 1.90202 1.26990 1.02232 1.08169 1.11186 0.90859 0.91079 0.90833 0.91029 0.91639 0.90899 0.91219 0.90094 0.93159 0.91628 0.90944 0.91179 0.93058 0.86982 0.76242 0.81107 0.80376 0.89119 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.85 8.65 113.37 0.98 2.83 16 2 Si 1.04 -5.05 13.35 68.60 0.92 -4.13 16 3 C -0.46 1.05 8.65 113.37 0.98 2.03 16 4 C -0.41 0.27 5.85 72.72 0.43 0.70 16 5 C -0.10 -0.21 5.21 31.52 0.16 -0.04 16 6 C -0.08 -0.12 2.40 -9.54 -0.02 -0.15 16 7 C 0.07 0.21 5.20 71.98 0.37 0.58 16 8 O -0.33 -2.48 9.07 -93.09 -0.84 -3.32 16 9 C 0.09 0.50 5.70 22.53 0.13 0.62 16 10 C -0.11 0.01 5.27 -19.77 -0.10 -0.10 16 11 C -0.08 0.15 2.38 71.24 0.17 0.32 16 12 O -0.54 -0.30 12.88 -148.98 -1.92 -2.21 16 13 Si 0.98 -5.05 25.48 68.60 1.75 -3.30 16 14 H -0.23 1.81 6.74 99.48 0.67 2.48 16 15 H -0.27 0.24 7.11 99.48 0.71 0.95 16 16 H -0.25 1.22 7.11 99.48 0.71 1.93 16 17 C -0.10 0.43 8.65 22.26 0.19 0.63 16 18 C -0.07 0.22 9.83 22.30 0.22 0.44 16 19 C -0.07 -0.21 6.32 22.35 0.14 -0.07 16 20 Cl -0.05 -0.18 28.61 -2.72 -0.08 -0.26 16 21 C 0.06 0.45 7.28 22.47 0.16 0.61 16 22 F -0.13 -1.48 16.68 44.97 0.75 -0.73 16 23 C -0.40 1.13 5.30 73.05 0.39 1.52 16 24 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 25 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 26 H 0.07 -0.31 7.96 -2.38 -0.02 -0.33 16 27 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 28 H 0.06 -0.06 7.96 -2.39 -0.02 -0.08 16 29 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 30 H 0.07 0.04 8.04 -2.39 -0.02 0.02 16 31 H 0.08 -0.11 8.04 -2.39 -0.02 -0.13 16 32 H 0.05 0.33 8.12 -2.39 -0.02 0.31 16 33 H 0.06 0.04 8.04 -2.39 -0.02 0.02 16 34 H 0.07 0.25 8.14 -2.38 -0.02 0.23 16 35 H 0.07 -0.01 7.06 -2.38 -0.02 -0.03 16 36 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.11 -0.17 6.58 -2.38 -0.02 -0.18 16 38 H 0.39 -2.60 8.70 -74.06 -0.64 -3.24 16 39 H 0.17 -1.68 4.88 -2.91 -0.01 -1.70 16 40 H 0.18 -1.54 8.06 -2.91 -0.02 -1.56 16 41 H 0.09 -0.40 8.03 -2.39 -0.02 -0.42 16 42 H 0.08 -0.26 8.06 -2.38 -0.02 -0.28 16 Total: 0.00 -12.78 361.40 5.87 -6.90 By element: Atomic # 1 Polarization: -3.96 SS G_CDS: 1.10 Total: -2.86 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 4.20 Total: 9.93 kcal Atomic # 8 Polarization: -2.77 SS G_CDS: -2.76 Total: -5.54 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.75 Total: -0.73 kcal Atomic # 14 Polarization: -10.10 SS G_CDS: 2.66 Total: -7.44 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -0.08 Total: -0.26 kcal Total: -12.78 5.87 -6.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_18323484_18051908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.267 kcal (2) G-P(sol) polarization free energy of solvation -12.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds