Wall clock time and date at job start Sat Mar 6 2021 00:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89654 * 111.45802 * 125.06597 * 2 1 3 5 5 C 1.55920 * 99.33841 * 138.35691 * 4 2 1 6 6 C 1.53571 * 109.50277 * 319.37972 * 5 4 2 7 7 C 1.53006 * 109.12221 * 169.52061 * 6 5 4 8 8 O 1.42896 * 109.47051 * 66.45352 * 7 6 5 9 9 C 1.35972 * 116.99721 * 179.97438 * 8 7 6 10 10 C 1.38656 * 119.99014 * 0.02562 * 9 8 7 11 11 C 1.38530 * 119.99283 * 179.97438 * 10 9 8 12 12 C 1.39260 * 119.88129 * 0.02562 * 11 10 9 13 13 C 1.38526 * 119.91629 * 0.04236 * 12 11 10 14 14 C 1.38214 * 120.09913 * 359.64695 * 13 12 11 15 15 C 1.50709 * 119.95981 * 180.31093 * 14 13 12 16 16 O 1.42903 * 109.47181 * 255.30826 * 15 14 13 17 17 Si 1.86305 * 109.46925 * 15.30584 * 15 14 13 18 18 H 1.48505 * 109.47057 * 60.00074 * 17 15 14 19 19 H 1.48493 * 109.46905 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47354 * 300.00373 * 17 15 14 21 21 O 1.36606 * 108.62105 * 180.02562 * 12 11 10 22 22 C 1.43990 * 105.46609 * 342.70584 * 21 12 11 23 23 O 1.36504 * 131.47256 * 180.02562 * 11 10 9 24 24 C 1.55354 * 111.29225 * 49.07554 * 6 5 4 25 25 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 26 26 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 27 27 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 29 29 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 31 31 H 1.08998 * 111.42418 * 255.88370 * 4 2 1 32 32 H 1.09003 * 111.42412 * 20.82559 * 4 2 1 33 33 H 1.08995 * 109.47225 * 79.40017 * 5 4 2 34 34 H 1.09000 * 109.47371 * 199.35610 * 5 4 2 35 35 H 1.09001 * 109.12873 * 288.55222 * 6 5 4 36 36 H 1.09007 * 109.46549 * 186.45308 * 7 6 5 37 37 H 1.08996 * 109.46988 * 306.45158 * 7 6 5 38 38 H 1.07999 * 120.00198 * 359.97438 * 10 9 8 39 39 H 1.08001 * 119.95032 * 179.97438 * 13 12 11 40 40 H 1.08999 * 109.47210 * 135.30784 * 15 14 13 41 41 H 0.96697 * 113.99845 * 59.99728 * 16 15 14 42 42 H 1.09001 * 110.57271 * 268.56764 * 22 21 12 43 43 H 1.09000 * 110.56749 * 145.70151 * 22 21 12 44 44 H 1.08995 * 111.07416 * 213.38000 * 24 6 5 45 45 H 1.08996 * 111.09205 * 89.35608 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5568 -1.0141 1.4447 5 6 3.7194 -1.7445 0.7058 6 6 3.2462 -2.1820 -0.6881 7 6 4.4523 -2.6583 -1.5002 8 8 4.9787 -3.8514 -0.9161 9 6 6.0609 -4.4095 -1.5213 10 6 6.6034 -3.8194 -2.6527 11 6 7.7063 -4.3876 -3.2689 12 6 8.2678 -5.5517 -2.7504 13 6 7.7215 -6.1384 -1.6206 14 6 6.6250 -5.5661 -1.0037 15 6 6.0375 -6.2032 0.2293 16 8 4.8223 -6.8726 -0.1134 17 14 7.2483 -7.4340 0.9293 18 1 8.5111 -6.7384 1.2853 19 1 6.6697 -8.0612 2.1445 20 1 7.5296 -8.4828 -0.0837 21 8 9.3327 -5.9066 -3.5288 22 6 9.1669 -5.1800 -4.7608 23 8 8.4183 -4.0134 -4.3718 24 6 2.5556 -1.0124 -1.4423 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.1907 2.2612 0.8899 29 1 3.6274 1.7027 -0.0005 30 1 2.1908 2.2612 -0.8900 31 1 2.9328 -0.3695 2.2392 32 1 1.8198 -1.7216 1.8247 33 1 4.5681 -1.0679 0.6057 34 1 4.0203 -2.6213 1.2792 35 1 2.5407 -3.0062 -0.5835 36 1 4.1426 -2.8616 -2.5254 37 1 5.2196 -1.8841 -1.4992 38 1 6.1661 -2.9168 -3.0534 39 1 8.1562 -7.0414 -1.2182 40 1 5.8310 -5.4334 0.9728 41 1 4.9309 -7.5722 -0.7719 42 1 8.6046 -5.7727 -5.4823 43 1 10.1359 -4.8946 -5.1704 44 1 1.7543 -1.3787 -2.0838 45 1 3.2797 -0.4331 -2.0150 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_7_1880786_18051908.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:11:53 Heat of formation + Delta-G solvation = -150.869401 kcal Electronic energy + Delta-G solvation = -25857.121022 eV Core-core repulsion = 22157.316447 eV Total energy + Delta-G solvation = -3699.804576 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.140 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.20344 -40.99177 -38.70649 -37.27729 -37.13239 -36.37388 -32.28464 -31.01178 -30.25435 -29.25892 -28.53536 -27.52085 -27.24821 -25.87068 -24.40817 -23.46875 -22.93842 -20.81153 -19.74629 -19.13492 -18.61774 -18.12272 -17.18860 -16.97703 -16.73855 -16.22978 -16.10480 -15.72007 -15.61420 -15.27526 -15.08625 -14.96654 -14.43741 -14.32221 -13.99860 -13.96329 -13.94821 -13.75271 -13.63515 -13.53961 -13.35024 -13.30295 -12.87901 -12.76820 -12.47047 -12.28063 -12.14675 -12.04679 -11.76865 -11.66389 -11.44918 -11.12172 -10.91561 -10.60511 -10.34422 -10.32662 -9.91273 -8.75492 -0.03996 0.16603 1.17751 1.43161 1.53778 1.55776 1.67564 1.83408 1.85805 1.94362 2.17434 2.40681 2.42306 2.52722 3.36783 3.53135 3.64436 3.73490 3.77287 3.86912 3.93058 3.95253 4.05570 4.10343 4.27569 4.33974 4.42870 4.50873 4.56554 4.61965 4.66188 4.68035 4.69695 4.70444 4.71515 4.73375 4.92737 4.96174 5.06920 5.08271 5.11188 5.23797 5.32220 5.39116 5.43861 5.49091 5.50483 5.96821 6.35377 6.64318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 0.967 3.033 3 C -0.442 4.442 4 C -0.396 4.396 5 C -0.113 4.113 6 C -0.078 4.078 7 C 0.059 3.941 8 O -0.290 6.290 9 C 0.176 3.824 10 C -0.195 4.195 11 C 0.083 3.917 12 C -0.004 4.004 13 C -0.068 4.068 14 C -0.150 4.150 15 C -0.060 4.060 16 O -0.531 6.531 17 Si 0.942 3.058 18 H -0.247 1.247 19 H -0.250 1.250 20 H -0.251 1.251 21 O -0.306 6.306 22 C 0.213 3.787 23 O -0.306 6.306 24 C -0.396 4.396 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.121 0.879 41 H 0.373 0.627 42 H 0.087 0.913 43 H 0.134 0.866 44 H 0.082 0.918 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.027 1.166 -1.214 1.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.165 2.835 3 C -0.550 4.550 4 C -0.483 4.483 5 C -0.150 4.150 6 C -0.097 4.097 7 C -0.016 4.016 8 O -0.203 6.203 9 C 0.129 3.871 10 C -0.214 4.214 11 C 0.038 3.962 12 C -0.048 4.048 13 C -0.087 4.087 14 C -0.151 4.151 15 C -0.171 4.171 16 O -0.336 6.336 17 Si 0.765 3.235 18 H -0.171 1.171 19 H -0.173 1.173 20 H -0.175 1.175 21 O -0.223 6.223 22 C 0.102 3.898 23 O -0.222 6.222 24 C -0.481 4.481 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.161 0.839 39 H 0.160 0.840 40 H 0.139 0.861 41 H 0.219 0.781 42 H 0.104 0.896 43 H 0.152 0.848 44 H 0.101 0.899 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.611 1.034 -0.365 1.255 hybrid contribution 0.353 0.072 -1.290 1.339 sum -0.258 1.105 -1.654 2.006 Atomic orbital electron populations 1.26017 1.19964 1.04642 1.04456 0.80509 0.67432 0.67538 0.68051 1.26015 1.06601 1.17897 1.04518 1.26660 1.03817 1.08022 1.09796 1.21923 0.97988 1.00862 0.94243 1.21511 0.95285 0.98512 0.94364 1.23176 0.96147 0.84809 0.97471 1.86233 1.41272 1.40750 1.52043 1.18174 0.87192 0.91722 0.89987 1.20079 0.97466 1.04757 0.99117 1.19462 0.93603 0.93513 0.89611 1.19466 0.90949 0.96560 0.97831 1.19783 0.95008 1.00006 0.93892 1.19306 0.98122 0.96727 1.00976 1.24739 0.93912 1.02038 0.96432 1.86573 1.30090 1.52988 1.63926 0.85838 0.78069 0.78871 0.80750 1.17062 1.17337 1.17491 1.87409 1.41692 1.66346 1.26840 1.25691 0.97939 0.79408 0.86793 1.87386 1.56777 1.35518 1.42521 1.26677 1.05339 1.05274 1.10797 0.91241 0.91096 0.90984 0.91083 0.91098 0.91167 0.90385 0.90275 0.91883 0.90818 0.89656 0.91701 0.91757 0.83856 0.84029 0.86107 0.78059 0.89555 0.84811 0.89900 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.79 8.65 101.05 0.87 1.66 16 2 Si 0.97 -2.81 13.35 -169.99 -2.27 -5.08 16 3 C -0.44 0.83 8.65 101.05 0.87 1.71 16 4 C -0.40 0.55 5.95 38.72 0.23 0.78 16 5 C -0.11 0.06 5.06 -24.87 -0.13 -0.06 16 6 C -0.08 0.06 2.58 -89.07 -0.23 -0.17 16 7 C 0.06 -0.01 3.97 37.16 0.15 0.14 16 8 O -0.29 -0.52 9.22 -19.65 -0.18 -0.70 16 9 C 0.18 0.36 6.66 -39.26 -0.26 0.10 16 10 C -0.19 -0.38 9.05 -39.32 -0.36 -0.73 16 11 C 0.08 0.25 7.15 -39.09 -0.28 -0.03 16 12 C 0.00 -0.01 7.15 -39.10 -0.28 -0.29 16 13 C -0.07 -0.12 8.67 -39.48 -0.34 -0.46 16 14 C -0.15 -0.24 5.27 -104.46 -0.55 -0.79 16 15 C -0.06 -0.03 2.37 36.01 0.09 0.05 16 16 O -0.53 -0.56 12.88 -35.23 -0.45 -1.02 16 17 Si 0.94 -0.06 25.50 -169.99 -4.33 -4.40 16 18 H -0.25 -0.18 7.11 56.52 0.40 0.22 16 19 H -0.25 -0.28 7.11 56.52 0.40 0.12 16 20 H -0.25 0.07 6.72 56.52 0.38 0.45 16 21 O -0.31 -0.85 11.41 -46.04 -0.53 -1.38 16 22 C 0.21 -0.01 8.89 101.05 0.90 0.89 16 23 O -0.31 -0.82 11.40 -45.70 -0.52 -1.34 16 24 C -0.40 0.85 5.28 38.41 0.20 1.05 16 25 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 26 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 27 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 28 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 29 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 30 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 31 H 0.08 -0.11 8.06 -51.93 -0.42 -0.53 16 32 H 0.08 -0.09 8.06 -51.93 -0.42 -0.50 16 33 H 0.06 -0.06 8.05 -51.93 -0.42 -0.48 16 34 H 0.07 0.04 8.11 -51.93 -0.42 -0.38 16 35 H 0.09 -0.01 8.14 -51.93 -0.42 -0.43 16 36 H 0.06 -0.05 7.65 -51.92 -0.40 -0.45 16 37 H 0.06 -0.07 7.59 -51.93 -0.39 -0.46 16 38 H 0.14 0.05 6.29 -52.49 -0.33 -0.28 16 39 H 0.14 0.05 4.88 -52.49 -0.26 -0.21 16 40 H 0.12 0.04 7.82 -51.93 -0.41 -0.36 16 41 H 0.37 -0.85 8.70 45.56 0.40 -0.46 16 42 H 0.09 -0.18 8.14 -51.93 -0.42 -0.60 16 43 H 0.13 -0.38 8.14 -51.93 -0.42 -0.81 16 44 H 0.08 -0.19 8.04 -51.93 -0.42 -0.61 16 45 H 0.08 -0.20 7.85 -51.93 -0.41 -0.61 16 LS Contribution 363.34 15.07 5.48 5.48 Total: 0.00 -5.79 363.34 -8.38 -14.17 By element: Atomic # 1 Polarization: -3.12 SS G_CDS: -6.46 Total: -9.57 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 0.89 Total: 3.85 kcal Atomic # 8 Polarization: -2.76 SS G_CDS: -1.68 Total: -4.44 kcal Atomic # 14 Polarization: -2.87 SS G_CDS: -6.60 Total: -9.47 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -5.79 -8.38 -14.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_1880786_18051908.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.703 kcal (2) G-P(sol) polarization free energy of solvation -5.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds