Wall clock time and date at job start Sat Mar 6 2021 00:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35898 * 116.99519 * 2 1 4 4 C 1.38606 * 120.03063 * 0.27818 * 3 2 1 5 5 C 1.38657 * 119.89155 * 180.25072 * 4 3 2 6 6 O 1.35896 * 120.02952 * 179.74804 * 5 4 3 7 7 C 1.42896 * 116.99913 * 179.72240 * 6 5 4 8 8 C 1.53006 * 109.47051 * 180.02562 * 7 6 5 9 9 C 1.53571 * 109.12221 * 66.45352 * 8 7 6 10 10 C 1.55920 * 109.50277 * 169.52061 * 9 8 7 11 11 Si 1.89654 * 99.33841 * 319.37972 * 10 9 8 12 12 C 1.86301 * 111.45802 * 138.35691 * 11 10 9 13 13 C 1.86297 * 111.45852 * 263.30215 * 11 10 9 14 14 C 1.55354 * 109.09401 * 188.23816 * 8 7 6 15 15 C 1.38757 * 119.94550 * 359.47321 * 5 4 3 16 16 C 1.38198 * 120.05089 * 0.25013 * 15 5 4 17 17 C 1.38160 * 120.11172 * 0.02651 * 16 15 5 18 18 C 1.50694 * 119.97422 * 179.97438 * 17 16 15 19 19 O 1.42893 * 109.47485 * 104.99692 * 18 17 16 20 20 Si 1.86305 * 109.47040 * 344.99747 * 18 17 16 21 21 H 1.48498 * 109.47346 * 60.00296 * 20 18 17 22 22 H 1.48499 * 109.47341 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47181 * 300.00002 * 20 18 17 24 24 H 1.09004 * 109.47109 * 60.00265 * 1 2 3 25 25 H 1.09005 * 109.46704 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47212 * 299.99595 * 1 2 3 27 27 H 1.07999 * 120.05879 * 359.97334 * 4 3 2 28 28 H 1.09007 * 109.47408 * 60.00607 * 7 6 5 29 29 H 1.08996 * 109.47383 * 299.99988 * 7 6 5 30 30 H 1.09004 * 109.10610 * 307.30417 * 8 7 6 31 31 H 1.08995 * 109.47161 * 49.49977 * 9 8 7 32 32 H 1.09000 * 109.47347 * 289.54437 * 9 8 7 33 33 H 1.08998 * 111.42335 * 201.85232 * 10 9 8 34 34 H 1.08994 * 111.47224 * 76.92847 * 10 9 8 35 35 H 1.09002 * 109.47148 * 185.06573 * 12 11 10 36 36 H 1.09001 * 109.46900 * 65.06725 * 12 11 10 37 37 H 1.09004 * 109.47198 * 305.06703 * 12 11 10 38 38 H 1.08995 * 109.47233 * 294.93193 * 13 11 10 39 39 H 1.08997 * 109.47080 * 54.93539 * 13 11 10 40 40 H 1.08998 * 109.47258 * 174.93150 * 13 11 10 41 41 H 1.08995 * 111.07416 * 92.91832 * 14 8 7 42 42 H 1.08996 * 111.09205 * 328.89439 * 14 8 7 43 43 H 1.07996 * 119.97584 * 180.27807 * 15 5 4 44 44 H 1.08004 * 119.94539 * 179.97438 * 16 15 5 45 45 H 1.09001 * 109.47155 * 224.99851 * 18 17 16 46 46 H 0.96701 * 113.99943 * 300.00275 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2915 2.3737 0.0058 5 6 1.9238 3.6077 0.0005 6 8 1.1869 4.7495 0.0011 7 6 1.9050 5.9850 0.0016 8 6 0.9140 7.1507 0.0028 9 6 0.1471 7.1577 1.3332 10 6 -0.6666 8.4819 1.4581 11 14 0.6134 9.6964 0.7626 12 6 -0.1792 10.9512 -0.3634 13 6 1.5770 10.5251 2.1247 14 6 1.6918 8.4791 -0.2070 15 6 3.3097 3.6758 0.0005 16 6 4.0597 2.5149 0.0005 17 6 3.4319 1.2842 0.0000 18 6 4.2527 0.0204 -0.0006 19 8 4.2198 -0.5696 1.3004 20 14 6.0138 0.4239 -0.4552 21 1 6.5746 1.3777 0.5352 22 1 6.8225 -0.8216 -0.4564 23 1 6.0480 1.0370 -1.8074 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2129 2.3188 0.0099 28 1 2.5317 6.0414 -0.8885 29 1 2.5318 6.0405 0.8916 30 1 0.2070 7.0188 -0.8163 31 1 0.8535 7.0860 2.1602 32 1 -0.5349 6.3080 1.3640 33 1 -0.9046 8.7064 2.4978 34 1 -1.5665 8.4567 0.8437 35 1 0.5934 11.5742 -0.8141 36 1 -0.8606 11.5772 0.2127 37 1 -0.7341 10.4363 -1.1477 38 1 0.9067 11.1485 2.7165 39 1 2.0273 9.7664 2.7647 40 1 2.3607 11.1454 1.6899 41 1 1.7323 8.7470 -1.2627 42 1 2.6934 8.4186 0.2186 43 1 3.8028 4.6366 0.0009 44 1 5.1383 2.5699 0.0000 45 1 3.8411 -0.6798 -0.7276 46 1 4.5718 -0.0011 1.9991 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_197680_18051908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:20:28 Heat of formation + Delta-G solvation = -125.834676 kcal Electronic energy + Delta-G solvation = -23703.361830 eV Core-core repulsion = 20296.013555 eV Total energy + Delta-G solvation = -3407.348275 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.156 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.70247 -40.21297 -38.42357 -37.36892 -36.36613 -32.22963 -31.28116 -30.52944 -29.11169 -28.38353 -28.35558 -27.38701 -26.02920 -24.25501 -23.19494 -22.41588 -20.75585 -19.87490 -18.39676 -17.64059 -17.27976 -17.11677 -16.86727 -16.52937 -16.07007 -15.80532 -15.70883 -15.21259 -14.97646 -14.64697 -14.38842 -14.00737 -13.85135 -13.80155 -13.72139 -13.56909 -13.40548 -13.29198 -13.16229 -12.75272 -12.71545 -12.55627 -12.30575 -12.21109 -12.17574 -11.99847 -11.80012 -11.61398 -11.47495 -11.35879 -10.76682 -10.47111 -10.32208 -10.25295 -9.70206 -9.09582 0.17516 0.30168 1.19573 1.44544 1.55151 1.69233 1.92845 2.00791 2.03997 2.08475 2.35455 2.55659 2.64853 3.60116 3.64309 3.78649 3.85072 3.97394 4.03339 4.06770 4.15954 4.20863 4.32033 4.36474 4.39457 4.48393 4.55709 4.60687 4.66187 4.67683 4.71274 4.76976 4.81567 4.84032 4.85225 4.86161 5.01754 5.14984 5.16756 5.22402 5.24644 5.33590 5.45175 5.50811 5.53920 5.60524 5.64835 6.23223 6.39482 6.77862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.318 6.318 3 C 0.179 3.821 4 C -0.258 4.258 5 C 0.166 3.834 6 O -0.325 6.325 7 C 0.057 3.943 8 C -0.079 4.079 9 C -0.114 4.114 10 C -0.416 4.416 11 Si 1.042 2.958 12 C -0.458 4.458 13 C -0.455 4.455 14 C -0.401 4.401 15 C -0.244 4.244 16 C -0.050 4.050 17 C -0.203 4.203 18 C -0.070 4.070 19 O -0.554 6.554 20 Si 0.988 3.012 21 H -0.238 1.238 22 H -0.275 1.275 23 H -0.256 1.256 24 H 0.064 0.936 25 H 0.118 0.882 26 H 0.062 0.938 27 H 0.142 0.858 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.152 0.848 44 H 0.151 0.849 45 H 0.106 0.894 46 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.680 4.668 -0.014 4.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.231 6.231 3 C 0.133 3.867 4 C -0.277 4.277 5 C 0.119 3.881 6 O -0.239 6.239 7 C -0.018 4.018 8 C -0.098 4.098 9 C -0.152 4.152 10 C -0.500 4.500 11 Si 1.235 2.765 12 C -0.565 4.565 13 C -0.562 4.562 14 C -0.486 4.486 15 C -0.263 4.263 16 C -0.068 4.068 17 C -0.204 4.204 18 C -0.179 4.179 19 O -0.360 6.360 20 Si 0.811 3.189 21 H -0.162 1.162 22 H -0.200 1.200 23 H -0.180 1.180 24 H 0.082 0.918 25 H 0.136 0.864 26 H 0.080 0.920 27 H 0.160 0.840 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.169 0.831 44 H 0.168 0.832 45 H 0.124 0.876 46 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 1.121 4.241 -0.561 4.422 hybrid contribution -0.692 0.182 0.350 0.796 sum 0.429 4.422 -0.211 4.448 Atomic orbital electron populations 1.23341 0.76721 1.05509 1.02119 1.86157 1.23054 1.26171 1.87685 1.18628 0.91653 0.83921 0.92539 1.20564 1.01180 0.89875 1.16074 1.18842 0.90359 0.86141 0.92711 1.86073 1.36745 1.13273 1.87803 1.23335 0.95503 0.80443 1.02493 1.21537 0.96536 0.92855 0.98846 1.21924 0.98482 0.98225 0.96537 1.26894 1.08402 1.08286 1.06405 0.79399 0.65911 0.65417 0.65818 1.26199 1.07567 1.12129 1.10585 1.26163 1.08986 1.07809 1.13274 1.26787 1.07328 1.05031 1.09414 1.21340 0.92230 1.00547 1.12134 1.20958 1.00619 0.90506 0.94701 1.19734 0.91453 0.96550 1.12656 1.24913 1.09788 0.94387 0.88860 1.86507 1.87285 1.45330 1.16917 0.85198 0.73503 0.79414 0.80777 1.16173 1.20029 1.18029 0.91768 0.86423 0.91986 0.84035 0.90855 0.90726 0.90720 0.91454 0.92986 0.90448 0.90837 0.90923 0.91236 0.91280 0.91222 0.91124 0.90805 0.89299 0.89140 0.83051 0.83190 0.87650 0.76646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.00 9.81 113.37 1.11 1.12 16 2 O -0.32 -2.33 9.82 -92.41 -0.91 -3.24 16 3 C 0.18 1.30 6.66 22.49 0.15 1.45 16 4 C -0.26 -1.64 8.97 22.46 0.20 -1.44 16 5 C 0.17 0.93 6.68 22.49 0.15 1.08 16 6 O -0.33 -1.66 9.90 -92.38 -0.91 -2.57 16 7 C 0.06 -0.03 3.98 71.98 0.29 0.26 16 8 C -0.08 0.14 2.58 -9.79 -0.03 0.12 16 9 C -0.11 0.06 5.06 31.80 0.16 0.22 16 10 C -0.42 1.09 5.95 72.99 0.43 1.52 16 11 Si 1.04 -7.17 13.35 68.60 0.92 -6.25 16 12 C -0.46 2.08 8.65 113.37 0.98 3.06 16 13 C -0.45 2.32 8.65 113.37 0.98 3.30 16 14 C -0.40 2.30 5.28 72.79 0.38 2.69 16 15 C -0.24 -0.59 9.04 22.38 0.20 -0.39 16 16 C -0.05 -0.11 8.65 22.24 0.19 0.09 16 17 C -0.20 -1.02 5.27 -19.75 -0.10 -1.13 16 18 C -0.07 -0.25 2.37 71.23 0.17 -0.08 16 19 O -0.55 -2.78 12.88 -148.98 -1.92 -4.70 16 20 Si 0.99 0.14 25.49 68.60 1.75 1.89 16 21 H -0.24 0.56 6.73 99.48 0.67 1.23 16 22 H -0.28 -1.00 7.11 99.48 0.71 -0.29 16 23 H -0.26 -0.29 7.11 99.48 0.71 0.42 16 24 H 0.06 -0.09 7.67 -2.39 -0.02 -0.11 16 25 H 0.12 -0.38 8.14 -2.38 -0.02 -0.40 16 26 H 0.06 -0.05 7.65 -2.39 -0.02 -0.07 16 27 H 0.14 0.61 6.30 -2.91 -0.02 0.60 16 28 H 0.07 -0.17 7.65 -2.38 -0.02 -0.19 16 29 H 0.07 -0.20 7.59 -2.39 -0.02 -0.22 16 30 H 0.07 -0.02 8.14 -2.38 -0.02 -0.04 16 31 H 0.07 -0.10 8.05 -2.39 -0.02 -0.12 16 32 H 0.05 0.16 8.11 -2.39 -0.02 0.14 16 33 H 0.08 -0.20 8.06 -2.39 -0.02 -0.22 16 34 H 0.07 -0.13 8.06 -2.39 -0.02 -0.15 16 35 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 36 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 37 H 0.07 -0.26 7.96 -2.38 -0.02 -0.28 16 38 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 39 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 40 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 41 H 0.09 -0.57 8.04 -2.39 -0.02 -0.59 16 42 H 0.09 -0.66 7.85 -2.39 -0.02 -0.67 16 43 H 0.15 -0.35 6.29 -2.91 -0.02 -0.37 16 44 H 0.15 -0.37 4.88 -2.91 -0.01 -0.39 16 45 H 0.11 0.49 7.83 -2.39 -0.02 0.47 16 46 H 0.39 -0.89 8.70 -74.06 -0.64 -1.53 16 Total: 0.00 -12.80 366.77 5.23 -7.57 By element: Atomic # 1 Polarization: -5.59 SS G_CDS: 1.03 Total: -4.56 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 5.28 Total: 11.85 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -3.74 Total: -10.50 kcal Atomic # 14 Polarization: -7.03 SS G_CDS: 2.66 Total: -4.36 kcal Total: -12.80 5.23 -7.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_197680_18051908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.262 kcal (2) G-P(sol) polarization free energy of solvation -12.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds