Wall clock time and date at job start Sat Mar 6 2021 00:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35892 * 117.00410 * 2 1 4 4 C 1.38749 * 120.02427 * 359.97438 * 3 2 1 5 5 C 1.38208 * 120.05181 * 179.97438 * 4 3 2 6 6 C 1.38154 * 120.10892 * 359.97438 * 5 4 3 7 7 C 1.38790 * 120.05402 * 0.02562 * 6 5 4 8 8 O 1.35902 * 120.02757 * 179.97438 * 7 6 5 9 9 C 1.42896 * 116.99935 * 359.97438 * 8 7 6 10 10 C 1.52996 * 109.47308 * 180.02562 * 9 8 7 11 11 C 1.53570 * 109.12241 * 66.45680 * 10 9 8 12 12 C 1.55922 * 109.50531 * 169.52201 * 11 10 9 13 13 Si 1.89655 * 99.33569 * 319.37962 * 12 11 10 14 14 C 1.86295 * 111.45875 * 138.35773 * 13 12 11 15 15 C 1.86306 * 111.45722 * 263.30344 * 13 12 11 16 16 C 1.55356 * 109.09523 * 188.23875 * 10 9 8 17 17 C 1.38614 * 119.95036 * 0.22995 * 7 6 5 18 18 C 1.50694 * 120.05933 * 179.75049 * 17 7 6 19 19 O 1.42902 * 109.46856 * 234.80149 * 18 17 7 20 20 Si 1.86301 * 109.47522 * 114.79974 * 18 17 7 21 21 H 1.48496 * 109.47212 * 65.62720 * 20 18 17 22 22 H 1.48494 * 109.47024 * 185.62782 * 20 18 17 23 23 H 1.48505 * 109.46837 * 305.62790 * 20 18 17 24 24 H 1.09001 * 109.47334 * 300.00519 * 1 2 3 25 25 H 1.09001 * 109.46526 * 60.00208 * 1 2 3 26 26 H 1.08999 * 109.47500 * 180.02562 * 1 2 3 27 27 H 1.07997 * 119.97794 * 359.97438 * 4 3 2 28 28 H 1.07997 * 119.94345 * 179.97438 * 5 4 3 29 29 H 1.07994 * 119.97150 * 179.97438 * 6 5 4 30 30 H 1.09005 * 109.46741 * 60.00439 * 9 8 7 31 31 H 1.09000 * 109.47286 * 300.00604 * 9 8 7 32 32 H 1.09005 * 109.01953 * 307.35920 * 10 9 8 33 33 H 1.08995 * 109.47049 * 49.49872 * 11 10 9 34 34 H 1.08997 * 109.47453 * 289.54300 * 11 10 9 35 35 H 1.09003 * 111.42457 * 201.85074 * 12 11 10 36 36 H 1.08999 * 111.42736 * 76.90873 * 12 11 10 37 37 H 1.08997 * 109.46910 * 185.06476 * 14 13 12 38 38 H 1.09000 * 109.47005 * 65.06684 * 14 13 12 39 39 H 1.08999 * 109.47323 * 305.06933 * 14 13 12 40 40 H 1.09000 * 109.47118 * 294.93109 * 15 13 12 41 41 H 1.08998 * 109.47150 * 54.93313 * 15 13 12 42 42 H 1.09000 * 109.46584 * 174.93695 * 15 13 12 43 43 H 1.08998 * 111.07218 * 92.91593 * 16 10 9 44 44 H 1.08996 * 111.09152 * 328.89763 * 16 10 9 45 45 H 1.09003 * 109.47129 * 354.79483 * 18 17 7 46 46 H 0.96696 * 114.00340 * 65.39197 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2909 2.3748 -0.0005 5 6 1.9179 3.6065 0.0000 6 6 3.2974 3.6820 0.0016 7 6 4.0570 2.5205 0.0021 8 8 5.4140 2.5953 0.0032 9 6 5.9916 3.9024 0.0031 10 6 7.5171 3.7859 0.0037 11 6 7.9751 3.1694 -1.3261 12 6 9.5248 3.2893 -1.4492 13 14 9.7542 5.0388 -0.7536 14 6 11.2339 5.1352 0.3741 15 6 9.8599 6.3053 -2.1158 16 6 8.1344 5.1959 0.2140 17 6 3.4307 1.2839 -0.0037 18 6 4.2532 0.0212 -0.0089 19 8 3.8631 -0.7968 -1.1137 20 14 3.9739 -0.9084 1.5813 21 1 2.5649 -1.3733 1.6420 22 1 4.8845 -2.0801 1.6362 23 1 4.2496 -0.0127 2.7333 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 0.2124 2.3184 -0.0014 28 1 1.3284 4.5114 -0.0008 29 1 3.7849 4.6456 0.0016 30 1 5.6677 4.4427 0.8927 31 1 5.6691 4.4421 -0.8873 32 1 7.8234 3.1355 0.8231 33 1 7.5028 3.6986 -2.1537 34 1 7.6885 2.1182 -1.3572 35 1 9.8475 3.2286 -2.4886 36 1 10.0319 2.5464 -0.8336 37 1 11.2833 6.1265 0.8246 38 1 12.1415 4.9519 -0.2010 39 1 11.1427 4.3837 1.1583 40 1 10.7588 6.1294 -2.7066 41 1 8.9821 6.2237 -2.7568 42 1 9.9007 7.3040 -1.6809 43 1 8.3261 5.3863 1.2700 44 1 7.4972 5.9706 -0.2124 45 1 5.3091 0.2757 -0.1003 46 1 4.0574 -0.4093 -1.9780 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_215219_18051908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:28:49 Heat of formation + Delta-G solvation = -126.216555 kcal Electronic energy + Delta-G solvation = -24286.696295 eV Core-core repulsion = 20879.331460 eV Total energy + Delta-G solvation = -3407.364835 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.72138 -40.17705 -38.02497 -37.36911 -36.41378 -32.62555 -30.75150 -30.25815 -29.10163 -28.40169 -28.35575 -27.12702 -26.51741 -24.13558 -22.73674 -22.57060 -20.69210 -19.62875 -18.50363 -17.69606 -17.25663 -17.13866 -16.73385 -16.55388 -16.02054 -15.88474 -15.69251 -15.11935 -14.79302 -14.52112 -14.29584 -13.94194 -13.80014 -13.78964 -13.56459 -13.40319 -13.30945 -13.16243 -13.09261 -12.87892 -12.70274 -12.40643 -12.30251 -12.27782 -12.17482 -12.02650 -11.74737 -11.52470 -11.36367 -11.25237 -10.92382 -10.75725 -10.45608 -10.23158 -9.36613 -9.13158 0.20947 0.39034 1.22939 1.44896 1.52088 1.69610 1.95146 2.00828 2.02021 2.05797 2.62097 2.66669 2.71873 3.62172 3.79180 3.81372 3.95636 4.02332 4.09887 4.13035 4.14832 4.27409 4.38520 4.40370 4.44392 4.49896 4.56921 4.61529 4.69543 4.72875 4.78236 4.82110 4.84316 4.84860 4.85951 4.87017 5.17669 5.18875 5.20261 5.24788 5.36166 5.42139 5.45804 5.53026 5.56446 5.61995 5.65479 6.33524 6.41644 6.73854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.315 6.315 3 C 0.166 3.834 4 C -0.253 4.253 5 C -0.036 4.036 6 C -0.252 4.252 7 C 0.170 3.830 8 O -0.321 6.321 9 C 0.058 3.942 10 C -0.080 4.080 11 C -0.114 4.114 12 C -0.415 4.415 13 Si 1.040 2.960 14 C -0.458 4.458 15 C -0.455 4.455 16 C -0.400 4.400 17 C -0.216 4.216 18 C -0.063 4.063 19 O -0.545 6.545 20 Si 1.020 2.980 21 H -0.252 1.252 22 H -0.266 1.266 23 H -0.262 1.262 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.111 0.889 27 H 0.149 0.851 28 H 0.154 0.846 29 H 0.148 0.852 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.168 5.253 -0.527 5.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.228 6.228 3 C 0.119 3.881 4 C -0.272 4.272 5 C -0.054 4.054 6 C -0.271 4.271 7 C 0.124 3.876 8 O -0.235 6.235 9 C -0.016 4.016 10 C -0.099 4.099 11 C -0.151 4.151 12 C -0.499 4.499 13 Si 1.233 2.767 14 C -0.565 4.565 15 C -0.562 4.562 16 C -0.485 4.485 17 C -0.218 4.218 18 C -0.172 4.172 19 O -0.351 6.351 20 Si 0.842 3.158 21 H -0.176 1.176 22 H -0.191 1.191 23 H -0.186 1.186 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.129 0.871 27 H 0.167 0.833 28 H 0.172 0.828 29 H 0.166 0.834 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.098 0.902 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -0.246 4.080 0.705 4.147 hybrid contribution -0.208 0.779 -0.943 1.241 sum -0.454 4.858 -0.238 4.885 Atomic orbital electron populations 1.23354 0.76817 1.05296 1.02439 1.86231 1.22904 1.26134 1.87558 1.18659 0.90954 0.85315 0.93169 1.21438 1.01255 0.91825 1.12682 1.21105 0.93836 0.97972 0.92502 1.21414 0.95260 0.97761 1.12687 1.18511 0.82952 0.92793 0.93385 1.86033 1.16587 1.32981 1.87854 1.23318 0.94097 0.81773 1.02417 1.21551 0.91393 0.97970 0.98975 1.21923 0.95836 1.00910 0.96471 1.26884 0.97374 1.19303 1.06375 0.79420 0.65662 0.65802 0.65825 1.26202 1.15080 1.04598 1.10624 1.26165 1.04579 1.12186 1.13285 1.26775 1.16393 0.95988 1.09336 1.18901 0.91709 0.94463 1.16733 1.24716 0.99017 0.93037 1.00398 1.86684 1.86087 1.45952 1.16394 0.84357 0.80666 0.77818 0.72999 1.17596 1.19073 1.18617 0.91549 0.91296 0.87106 0.83331 0.82816 0.83448 0.90980 0.90788 0.90572 0.91460 0.92714 0.90465 0.90820 0.90973 0.91269 0.91274 0.91252 0.91119 0.90858 0.89355 0.89200 0.90156 0.77829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.32 -2.35 7.34 -80.76 -0.59 -2.94 16 3 C 0.17 1.16 6.11 22.49 0.14 1.29 16 4 C -0.25 -0.68 9.04 22.38 0.20 -0.48 16 5 C -0.04 -0.03 10.04 22.24 0.22 0.20 16 6 C -0.25 -0.55 9.04 22.38 0.20 -0.35 16 7 C 0.17 0.99 6.66 22.49 0.15 1.14 16 8 O -0.32 -1.51 8.67 -92.44 -0.80 -2.32 16 9 C 0.06 -0.04 3.98 71.98 0.29 0.24 16 10 C -0.08 0.15 2.58 -9.79 -0.03 0.13 16 11 C -0.11 0.09 5.06 31.80 0.16 0.25 16 12 C -0.41 1.08 5.95 72.99 0.43 1.52 16 13 Si 1.04 -6.99 13.35 68.60 0.92 -6.07 16 14 C -0.46 1.95 8.65 113.37 0.98 2.93 16 15 C -0.45 2.23 8.65 113.37 0.98 3.21 16 16 C -0.40 2.27 5.28 72.79 0.38 2.65 16 17 C -0.22 -1.69 4.49 -19.68 -0.09 -1.78 16 18 C -0.06 -0.49 2.63 71.23 0.19 -0.30 16 19 O -0.55 -4.38 11.83 -137.40 -1.63 -6.00 16 20 Si 1.02 8.84 26.99 68.60 1.85 10.69 16 21 H -0.25 -2.69 6.45 99.48 0.64 -2.05 16 22 H -0.27 -2.52 7.11 99.48 0.71 -1.81 16 23 H -0.26 -2.32 7.11 99.48 0.71 -1.61 16 24 H 0.07 -0.20 7.66 -2.39 -0.02 -0.21 16 25 H 0.07 -0.22 7.66 -2.39 -0.02 -0.23 16 26 H 0.11 -0.32 8.14 -2.39 -0.02 -0.34 16 27 H 0.15 -0.27 6.29 -2.91 -0.02 -0.29 16 28 H 0.15 -0.75 8.06 -2.91 -0.02 -0.77 16 29 H 0.15 -0.32 6.29 -2.91 -0.02 -0.34 16 30 H 0.07 -0.16 7.65 -2.38 -0.02 -0.18 16 31 H 0.07 -0.21 7.59 -2.39 -0.02 -0.23 16 32 H 0.08 -0.04 8.14 -2.38 -0.02 -0.06 16 33 H 0.07 -0.12 8.05 -2.39 -0.02 -0.14 16 34 H 0.05 0.14 8.11 -2.39 -0.02 0.12 16 35 H 0.08 -0.20 8.06 -2.39 -0.02 -0.22 16 36 H 0.07 -0.12 8.06 -2.39 -0.02 -0.14 16 37 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 38 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 39 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 40 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 41 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 42 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 43 H 0.09 -0.55 8.04 -2.39 -0.02 -0.57 16 44 H 0.09 -0.64 7.85 -2.39 -0.02 -0.66 16 45 H 0.08 0.51 6.83 -2.39 -0.02 0.49 16 46 H 0.37 0.80 9.11 -74.06 -0.67 0.13 16 Total: 0.00 -11.98 366.17 6.04 -5.94 By element: Atomic # 1 Polarization: -12.03 SS G_CDS: 0.96 Total: -11.06 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: 5.33 Total: 11.76 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: -3.02 Total: -11.26 kcal Atomic # 14 Polarization: 1.85 SS G_CDS: 2.77 Total: 4.62 kcal Total: -11.98 6.04 -5.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_215219_18051908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.279 kcal (2) G-P(sol) polarization free energy of solvation -11.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds