Wall clock time and date at job start Sat Mar 6 2021 00:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36004 * 116.99997 * 2 1 4 4 C 1.38526 * 120.06272 * 0.23242 * 3 2 1 5 5 C 1.38281 * 120.00544 * 180.27692 * 4 3 2 6 6 C 1.50702 * 119.93043 * 179.76750 * 5 4 3 7 7 O 1.42903 * 109.47117 * 16.35713 * 6 5 4 8 8 Si 1.86299 * 109.46996 * 256.36063 * 6 5 4 9 9 H 1.48507 * 109.46930 * 185.41997 * 8 6 5 10 10 H 1.48499 * 109.46999 * 305.41356 * 8 6 5 11 11 H 1.48494 * 109.47642 * 65.41672 * 8 6 5 12 12 C 1.38289 * 120.14069 * 359.74378 * 5 4 3 13 13 Br 1.89094 * 119.93947 * 179.97438 * 12 5 4 14 14 C 1.38361 * 120.12390 * 0.02562 * 12 5 4 15 15 C 1.38523 * 119.99125 * 0.02562 * 14 12 5 16 16 O 1.35990 * 120.06874 * 179.97438 * 15 14 12 17 17 C 1.42907 * 116.99995 * 359.97438 * 16 15 14 18 18 C 1.53000 * 109.47146 * 179.97438 * 17 16 15 19 19 C 1.53571 * 109.11955 * 66.45888 * 18 17 16 20 20 C 1.55915 * 109.50598 * 169.52107 * 19 18 17 21 21 Si 1.89651 * 99.33505 * 319.37729 * 20 19 18 22 22 C 1.86299 * 111.46005 * 138.35797 * 21 20 19 23 23 C 1.86302 * 111.45993 * 263.30203 * 21 20 19 24 24 C 1.55350 * 109.09270 * 188.23380 * 18 17 16 25 25 H 1.08995 * 109.47210 * 300.00046 * 1 2 3 26 26 H 1.08991 * 109.47113 * 60.00593 * 1 2 3 27 27 H 1.09003 * 109.47131 * 180.02562 * 1 2 3 28 28 H 1.07997 * 119.99468 * 359.97438 * 4 3 2 29 29 H 1.08996 * 109.47192 * 136.35418 * 6 5 4 30 30 H 0.96700 * 114.00300 * 180.02562 * 7 6 5 31 31 H 1.07994 * 120.00461 * 179.97438 * 14 12 5 32 32 H 1.09006 * 109.46852 * 60.00348 * 17 16 15 33 33 H 1.08992 * 109.46978 * 300.00545 * 17 16 15 34 34 H 1.08995 * 109.02280 * 307.36304 * 18 17 16 35 35 H 1.08999 * 109.48030 * 49.49402 * 19 18 17 36 36 H 1.09005 * 109.47381 * 289.53701 * 19 18 17 37 37 H 1.09001 * 111.42833 * 201.85021 * 20 19 18 38 38 H 1.09003 * 111.43118 * 76.90802 * 20 19 18 39 39 H 1.09007 * 109.46938 * 185.06266 * 22 21 20 40 40 H 1.09003 * 109.47276 * 65.07001 * 22 21 20 41 41 H 1.08991 * 109.47235 * 305.06430 * 22 21 20 42 42 H 1.09005 * 109.47426 * 294.93436 * 23 21 20 43 43 H 1.09005 * 109.47272 * 54.92804 * 23 21 20 44 44 H 1.09002 * 109.47424 * 174.93438 * 23 21 20 45 45 H 1.09002 * 111.06772 * 92.92361 * 24 18 17 46 46 H 1.08996 * 111.09745 * 328.89927 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2933 2.3744 0.0049 5 6 1.9223 3.6059 -0.0009 6 6 1.1012 4.8696 -0.0009 7 8 -0.2408 4.5657 0.3848 8 14 1.1033 5.6114 -1.7098 9 1 0.4057 6.9222 -1.6813 10 1 2.5039 5.8060 -2.1633 11 1 0.4020 4.6978 -2.6471 12 6 3.3032 3.6803 -0.0062 13 35 4.1573 5.3673 -0.0149 14 6 4.0609 2.5226 -0.0063 15 6 3.4364 1.2862 -0.0016 16 8 4.1796 0.1474 -0.0022 17 6 5.6005 0.3000 -0.0083 18 6 6.2617 -1.0798 -0.0074 19 6 5.9510 -1.7873 -1.3345 20 6 6.8285 -3.0701 -1.4585 21 14 8.4614 -2.3934 -0.7711 22 6 9.2888 -3.6247 0.3559 23 6 9.6059 -1.8552 -2.1390 24 6 7.7923 -0.9096 0.1962 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2148 2.3190 0.0082 29 1 1.5297 5.5812 0.7047 30 1 -0.8275 5.3341 0.4063 31 1 5.1392 2.5830 -0.0109 32 1 5.9105 0.8516 0.8793 33 1 5.9032 0.8478 -0.9007 34 1 5.8546 -1.6682 0.8148 35 1 6.1701 -1.1156 -2.1646 36 1 4.8970 -2.0643 -1.3607 37 1 6.9329 -3.3822 -2.4976 38 1 6.4408 -3.8792 -0.8396 39 1 10.1741 -3.1713 0.8019 40 1 9.5811 -4.5038 -0.2185 41 1 8.5955 -3.9193 1.1436 42 1 9.9001 -2.7231 -2.7292 43 1 9.0940 -1.1369 -2.7796 44 1 10.4932 -1.3907 -1.7088 45 1 8.0573 -0.9784 1.2512 46 1 8.1434 0.0284 -0.2337 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_2162974_18051908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:38:09 Heat of formation + Delta-G solvation = -120.596813 kcal Electronic energy + Delta-G solvation = -25961.312058 eV Core-core repulsion = 22214.372910 eV Total energy + Delta-G solvation = -3746.939147 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 388.066 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.84082 -39.83624 -39.01152 -37.40650 -36.55908 -33.06362 -32.12183 -30.73437 -30.11728 -29.10459 -28.53792 -28.36697 -27.40629 -25.95131 -24.26502 -23.09504 -22.43707 -20.75717 -19.59521 -18.76479 -18.20723 -17.45673 -17.23671 -16.58880 -16.38731 -16.14741 -15.94365 -15.65700 -15.63602 -14.83987 -14.70417 -14.39786 -14.23177 -13.86768 -13.81916 -13.77623 -13.69940 -13.45840 -13.36655 -13.17149 -13.02829 -12.83036 -12.63120 -12.60495 -12.46087 -12.23281 -12.18700 -12.08920 -11.95032 -11.61935 -11.38876 -11.33641 -11.11439 -10.75802 -10.52454 -10.46020 -10.24025 -9.76320 -8.87375 -0.12125 -0.01799 0.43532 1.11303 1.40113 1.46543 1.69585 1.91216 2.01724 2.05338 2.13028 2.19183 2.37165 2.65500 3.09789 3.48871 3.66519 3.80133 3.88001 4.01624 4.06740 4.12268 4.29026 4.30859 4.33756 4.37690 4.45375 4.54731 4.56302 4.66155 4.67890 4.68723 4.75422 4.78437 4.82559 4.85049 4.86190 4.87077 5.09444 5.16458 5.17637 5.32627 5.34305 5.49419 5.53501 5.61042 5.65595 5.97335 6.42957 6.74403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.323 6.323 3 C 0.102 3.898 4 C -0.151 4.151 5 C -0.057 4.057 6 C -0.073 4.073 7 O -0.556 6.556 8 Si 0.937 3.063 9 H -0.232 1.232 10 H -0.235 1.235 11 H -0.271 1.271 12 C -0.100 4.100 13 Br -0.032 7.032 14 C -0.142 4.142 15 C 0.093 3.907 16 O -0.315 6.315 17 C 0.053 3.947 18 C -0.077 4.077 19 C -0.114 4.114 20 C -0.415 4.415 21 Si 1.041 2.959 22 C -0.456 4.456 23 C -0.454 4.454 24 C -0.401 4.401 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.118 0.882 28 H 0.163 0.837 29 H 0.098 0.902 30 H 0.403 0.597 31 H 0.162 0.838 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.627 1.327 0.071 1.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.237 6.237 3 C 0.056 3.944 4 C -0.170 4.170 5 C -0.060 4.060 6 C -0.182 4.182 7 O -0.365 6.365 8 Si 0.756 3.244 9 H -0.154 1.154 10 H -0.158 1.158 11 H -0.195 1.195 12 C -0.180 4.180 13 Br 0.053 6.947 14 C -0.163 4.163 15 C 0.047 3.953 16 O -0.229 6.229 17 C -0.021 4.021 18 C -0.096 4.096 19 C -0.151 4.151 20 C -0.499 4.499 21 Si 1.234 2.766 22 C -0.564 4.564 23 C -0.561 4.561 24 C -0.486 4.486 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.137 0.863 28 H 0.181 0.819 29 H 0.116 0.884 30 H 0.255 0.745 31 H 0.179 0.821 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.107 0.893 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.242 1.328 -0.719 1.956 hybrid contribution -0.854 0.156 0.436 0.972 sum 0.388 1.484 -0.283 1.560 Atomic orbital electron populations 1.23387 0.76304 1.05675 1.02411 1.86174 1.23363 1.25651 1.88468 1.18618 0.89547 0.85918 1.00322 1.20977 1.01560 0.89451 1.05009 1.19079 0.91345 0.95183 1.00361 1.24692 0.85111 0.97335 1.11070 1.86335 1.18856 1.39584 1.91728 0.85807 0.83134 0.80041 0.75381 1.15395 1.15769 1.19512 1.21175 0.93486 0.92116 1.11198 1.96698 1.79043 1.21401 1.97529 1.21057 1.01320 0.89070 1.04806 1.18312 0.88548 0.86403 1.02074 1.86205 1.20242 1.27845 1.88620 1.23359 0.76595 0.99892 1.02266 1.21513 0.95588 0.93623 0.98876 1.21913 1.00058 0.96626 0.96522 1.26904 1.17032 0.99651 1.06355 0.79409 0.65415 0.65855 0.65885 1.26179 1.07861 1.11766 1.10553 1.26152 1.10745 1.05948 1.13285 1.26803 0.96958 1.15362 1.09465 0.91536 0.91605 0.86349 0.81921 0.88397 0.74532 0.82065 0.90989 0.90882 0.90819 0.91504 0.93201 0.90416 0.90876 0.90858 0.91159 0.91289 0.91147 0.91167 0.90747 0.89268 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.01 9.81 113.37 1.11 1.12 16 2 O -0.32 -2.83 10.28 -79.73 -0.82 -3.65 16 3 C 0.10 0.89 6.70 22.57 0.15 1.04 16 4 C -0.15 -0.90 8.35 22.35 0.19 -0.71 16 5 C -0.06 -0.29 4.49 -19.84 -0.09 -0.38 16 6 C -0.07 -0.03 2.43 71.24 0.17 0.14 16 7 O -0.56 0.73 11.50 -148.98 -1.71 -0.98 16 8 Si 0.94 0.70 26.64 68.60 1.83 2.53 16 9 H -0.23 0.29 7.11 99.48 0.71 0.99 16 10 H -0.24 -0.53 6.27 99.48 0.62 0.09 16 11 H -0.27 -1.29 7.11 99.48 0.71 -0.58 16 12 C -0.10 -0.49 5.96 22.31 0.13 -0.36 16 13 Br -0.03 -0.08 29.81 -20.37 -0.61 -0.69 16 14 C -0.14 -0.71 8.77 22.37 0.20 -0.51 16 15 C 0.09 0.77 6.70 22.57 0.15 0.93 16 16 O -0.31 -2.67 9.69 -79.58 -0.77 -3.45 16 17 C 0.05 0.11 3.98 71.98 0.29 0.39 16 18 C -0.08 -0.04 2.58 -9.79 -0.03 -0.06 16 19 C -0.11 -0.20 5.06 31.79 0.16 -0.04 16 20 C -0.42 0.39 5.95 72.99 0.43 0.82 16 21 Si 1.04 -5.79 13.35 68.60 0.92 -4.87 16 22 C -0.46 1.63 8.65 113.37 0.98 2.61 16 23 C -0.45 1.84 8.65 113.37 0.98 2.82 16 24 C -0.40 1.63 5.28 72.79 0.38 2.01 16 25 H 0.07 -0.08 7.65 -2.39 -0.02 -0.10 16 26 H 0.07 -0.09 7.67 -2.39 -0.02 -0.11 16 27 H 0.12 -0.38 8.14 -2.39 -0.02 -0.40 16 28 H 0.16 0.55 5.39 -2.91 -0.02 0.53 16 29 H 0.10 -0.19 7.14 -2.39 -0.02 -0.20 16 30 H 0.40 -4.20 8.74 -74.06 -0.65 -4.84 16 31 H 0.16 0.14 6.30 -2.91 -0.02 0.13 16 32 H 0.07 0.00 7.65 -2.38 -0.02 -0.02 16 33 H 0.07 -0.03 7.60 -2.39 -0.02 -0.04 16 34 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.07 0.04 8.05 -2.39 -0.02 0.03 16 36 H 0.05 0.31 8.11 -2.38 -0.02 0.29 16 37 H 0.08 -0.09 8.06 -2.39 -0.02 -0.11 16 38 H 0.07 0.00 8.06 -2.39 -0.02 -0.02 16 39 H 0.07 -0.29 7.96 -2.38 -0.02 -0.31 16 40 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 41 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 42 H 0.07 -0.26 7.96 -2.38 -0.02 -0.28 16 43 H 0.07 -0.25 7.96 -2.38 -0.02 -0.27 16 44 H 0.07 -0.34 7.96 -2.39 -0.02 -0.35 16 45 H 0.09 -0.44 8.04 -2.39 -0.02 -0.46 16 46 H 0.09 -0.51 7.85 -2.39 -0.02 -0.52 16 Total: 0.00 -13.22 385.49 5.05 -8.18 By element: Atomic # 1 Polarization: -7.88 SS G_CDS: 1.00 Total: -6.88 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 5.22 Total: 9.81 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -3.30 Total: -8.07 kcal Atomic # 14 Polarization: -5.08 SS G_CDS: 2.74 Total: -2.34 kcal Atomic # 35 Polarization: -0.08 SS G_CDS: -0.61 Total: -0.69 kcal Total: -13.22 5.05 -8.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_2162974_18051908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.421 kcal (2) G-P(sol) polarization free energy of solvation -13.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds