Wall clock time and date at job start Sat Mar 6 2021 00:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 C 1.52995 * 109.47643 * 190.93802 * 6 5 4 8 8 O 1.42901 * 109.47074 * 293.54788 * 7 6 5 9 9 C 1.35929 * 117.00167 * 180.02562 * 8 7 6 10 10 C 1.38669 * 120.05985 * 359.71511 * 9 8 7 11 11 C 1.38188 * 119.95760 * 179.79621 * 10 9 8 12 12 C 1.38234 * 120.07541 * 0.46390 * 11 10 9 13 13 C 1.50707 * 119.93944 * 179.77197 * 12 11 10 14 14 O 1.42894 * 109.47174 * 120.02637 * 13 12 11 15 15 Si 1.86298 * 109.46955 * 0.02562 * 13 12 11 16 16 H 1.48499 * 109.47107 * 60.00517 * 15 13 12 17 17 H 1.48500 * 109.46860 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47262 * 300.00288 * 15 13 12 19 19 C 1.38286 * 120.12217 * 359.78923 * 12 11 10 20 20 C 1.38212 * 120.04325 * 359.97438 * 19 12 11 21 21 Cl 1.73592 * 120.04279 * 179.97438 * 20 19 12 22 22 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 23 23 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 24 24 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 25 25 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 27 27 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 29 29 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 30 30 H 1.08999 * 111.05229 * 356.11516 * 4 2 1 31 31 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 32 32 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 33 33 H 1.09004 * 109.47418 * 70.93608 * 6 5 4 34 34 H 1.09007 * 109.46916 * 53.54343 * 7 6 5 35 35 H 1.09005 * 109.47687 * 173.54545 * 7 6 5 36 36 H 1.08001 * 120.01608 * 0.02562 * 10 9 8 37 37 H 1.08000 * 119.96185 * 180.23998 * 11 10 9 38 38 H 1.09008 * 109.46504 * 240.02404 * 13 12 11 39 39 H 0.96708 * 113.99642 * 299.99443 * 14 13 12 40 40 H 1.08001 * 119.98242 * 179.97438 * 19 12 11 41 41 H 1.08996 * 111.41269 * 283.05303 * 22 6 5 42 42 H 1.09006 * 111.49251 * 158.06559 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1417 -2.9771 -1.5067 8 8 5.3027 -3.5593 -0.9107 9 6 5.8112 -4.6702 -1.5067 10 6 5.2019 -5.1922 -2.6377 11 6 5.7231 -6.3192 -3.2443 12 6 6.8454 -6.9322 -2.7194 13 6 7.4082 -8.1641 -3.3804 14 8 8.7523 -7.9108 -3.7940 15 14 6.3726 -8.5992 -4.8667 16 1 6.3896 -7.4691 -5.8299 17 1 6.9268 -9.8134 -5.5177 18 1 4.9758 -8.8623 -4.4369 19 6 7.4525 -6.4173 -1.5886 20 6 6.9383 -5.2876 -0.9807 21 17 7.7000 -4.6417 0.4392 22 6 2.5568 -1.0142 -1.4447 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 2.1907 2.2612 0.8899 27 1 3.6274 1.7027 -0.0005 28 1 2.1908 2.2612 -0.8900 29 1 3.2797 -0.4330 2.0151 30 1 1.7543 -1.3786 2.0840 31 1 4.1055 -2.5196 1.2701 32 1 2.5407 -3.0054 0.5873 33 1 4.5675 -1.0680 -0.6042 34 1 3.3305 -3.7052 -1.5088 35 1 4.3683 -2.6826 -2.5315 36 1 4.3228 -4.7162 -3.0463 37 1 5.2509 -6.7236 -4.1274 38 1 7.3957 -8.9936 -2.6733 39 1 8.8391 -7.1833 -4.4253 40 1 8.3290 -6.8983 -1.1801 41 1 1.8198 -1.7216 -1.8246 42 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_2162996_18051908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:47:51 Heat of formation + Delta-G solvation = -96.426103 kcal Electronic energy + Delta-G solvation = -21620.720750 eV Core-core repulsion = 18329.067745 eV Total energy + Delta-G solvation = -3291.653005 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.44674 -39.46951 -37.77808 -37.18371 -36.50268 -32.14129 -31.84055 -30.56236 -29.11639 -28.38119 -27.57915 -26.09336 -24.54441 -23.49960 -22.45322 -20.75516 -19.46078 -18.40646 -17.44120 -17.12456 -16.82210 -16.17380 -16.00231 -15.70428 -15.45447 -15.10986 -14.96021 -14.56275 -14.05226 -13.93009 -13.84932 -13.81554 -13.70299 -13.43861 -13.34371 -13.17659 -12.70932 -12.69085 -12.43851 -12.28167 -12.23876 -12.12733 -12.04470 -12.02921 -11.66492 -11.52901 -11.36400 -10.76929 -10.46206 -10.43151 -10.28061 -10.01348 -9.26113 -0.02158 0.11612 1.05293 1.24673 1.48033 1.52755 1.68652 1.93705 2.00641 2.02341 2.12874 2.40791 2.64278 3.49449 3.58135 3.69866 3.78728 3.81041 4.00546 4.06527 4.09488 4.33798 4.38166 4.53828 4.55730 4.62840 4.65716 4.70352 4.74760 4.80963 4.83153 4.85270 4.86326 4.88296 5.00870 5.12399 5.21443 5.21704 5.34215 5.46107 5.50739 5.54387 5.60158 5.64519 6.22962 6.71095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.041 2.959 3 C -0.458 4.458 4 C -0.418 4.418 5 C -0.110 4.110 6 C -0.083 4.083 7 C 0.057 3.943 8 O -0.317 6.317 9 C 0.135 3.865 10 C -0.193 4.193 11 C -0.080 4.080 12 C -0.148 4.148 13 C -0.077 4.077 14 O -0.553 6.553 15 Si 0.984 3.016 16 H -0.247 1.247 17 H -0.276 1.276 18 H -0.252 1.252 19 C -0.049 4.049 20 C -0.089 4.089 21 Cl -0.068 7.068 22 C -0.396 4.396 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.161 0.839 37 H 0.147 0.853 38 H 0.125 0.875 39 H 0.389 0.611 40 H 0.146 0.854 41 H 0.092 0.908 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.357 1.335 -3.623 5.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.234 2.766 3 C -0.565 4.565 4 C -0.502 4.502 5 C -0.148 4.148 6 C -0.101 4.101 7 C -0.017 4.017 8 O -0.231 6.231 9 C 0.088 3.912 10 C -0.212 4.212 11 C -0.098 4.098 12 C -0.149 4.149 13 C -0.187 4.187 14 O -0.360 6.360 15 Si 0.807 3.193 16 H -0.170 1.170 17 H -0.202 1.202 18 H -0.176 1.176 19 C -0.068 4.068 20 C -0.116 4.116 21 Cl -0.039 7.039 22 C -0.481 4.481 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.179 0.821 37 H 0.164 0.836 38 H 0.142 0.858 39 H 0.238 0.762 40 H 0.164 0.836 41 H 0.111 0.889 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.628 0.846 -3.620 5.937 hybrid contribution 0.449 0.464 0.434 0.778 sum -4.179 1.310 -3.186 5.416 Atomic orbital electron populations 1.26152 1.20741 1.04659 1.04602 0.79407 0.65894 0.65591 0.65704 1.26210 1.06573 1.19140 1.04617 1.26758 1.05482 1.06663 1.11325 1.21710 0.99898 0.98605 0.94562 1.21703 0.99098 0.94922 0.94421 1.23307 0.85270 0.95444 0.97714 1.86183 1.45053 1.38617 1.53239 1.18899 0.92278 0.87662 0.92401 1.21419 1.03493 0.99653 0.96643 1.21179 0.94839 0.94407 0.99341 1.20309 0.97613 0.99727 0.97273 1.25045 0.89537 0.96865 1.07236 1.86496 1.25129 1.57981 1.66432 0.85211 0.77820 0.80068 0.76190 1.17048 1.20181 1.17630 1.20861 0.99274 0.92589 0.94075 1.20459 0.97358 0.99413 0.94395 1.98373 1.80771 1.86250 1.38512 1.26910 1.02110 1.08051 1.10980 0.90772 0.91340 0.91003 0.91291 0.91460 0.90778 0.91239 0.90453 0.93499 0.91855 0.90432 0.90582 0.90402 0.82109 0.83593 0.85753 0.76154 0.83623 0.88922 0.89092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.26 8.65 113.37 0.98 3.25 16 2 Si 1.04 -6.83 13.35 68.60 0.92 -5.92 16 3 C -0.46 1.81 8.65 113.37 0.98 2.79 16 4 C -0.42 0.74 5.85 72.72 0.43 1.16 16 5 C -0.11 -0.03 5.21 31.52 0.16 0.13 16 6 C -0.08 0.15 2.40 -9.54 -0.02 0.13 16 7 C 0.06 -0.08 4.11 71.98 0.30 0.22 16 8 O -0.32 -1.53 9.38 -92.75 -0.87 -2.40 16 9 C 0.13 0.60 6.68 22.52 0.15 0.75 16 10 C -0.19 0.03 9.04 22.36 0.20 0.23 16 11 C -0.08 0.10 8.66 22.26 0.19 0.29 16 12 C -0.15 -0.02 5.39 -19.85 -0.11 -0.13 16 13 C -0.08 0.16 2.82 71.24 0.20 0.36 16 14 O -0.55 0.19 12.77 -148.98 -1.90 -1.71 16 15 Si 0.98 -3.18 25.07 68.60 1.72 -1.46 16 16 H -0.25 0.95 7.11 99.48 0.71 1.66 16 17 H -0.28 -0.24 7.11 99.48 0.71 0.46 16 18 H -0.25 0.72 7.11 99.48 0.71 1.43 16 19 C -0.05 -0.16 9.39 22.27 0.21 0.05 16 20 C -0.09 -0.53 6.33 22.41 0.14 -0.39 16 21 Cl -0.07 -0.53 28.51 -2.72 -0.08 -0.61 16 22 C -0.40 2.43 5.30 73.05 0.39 2.82 16 23 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 24 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 25 H 0.07 -0.34 7.96 -2.38 -0.02 -0.36 16 26 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 27 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 28 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 29 H 0.07 -0.03 8.04 -2.39 -0.02 -0.05 16 30 H 0.08 -0.14 8.04 -2.39 -0.02 -0.16 16 31 H 0.05 0.22 8.12 -2.39 -0.02 0.20 16 32 H 0.06 -0.03 8.04 -2.39 -0.02 -0.04 16 33 H 0.08 -0.03 8.14 -2.39 -0.02 -0.05 16 34 H 0.08 -0.28 7.58 -2.38 -0.02 -0.30 16 35 H 0.08 -0.31 7.67 -2.38 -0.02 -0.33 16 36 H 0.16 -0.83 6.30 -2.91 -0.02 -0.85 16 37 H 0.15 -0.77 4.87 -2.91 -0.01 -0.79 16 38 H 0.12 -0.43 7.96 -2.38 -0.02 -0.45 16 39 H 0.39 -2.62 8.70 -74.05 -0.64 -3.26 16 40 H 0.15 0.32 8.06 -2.91 -0.02 0.30 16 41 H 0.09 -0.71 8.03 -2.39 -0.02 -0.73 16 42 H 0.09 -0.66 8.06 -2.38 -0.02 -0.68 16 Total: 0.00 -11.09 354.26 5.10 -5.98 By element: Atomic # 1 Polarization: -6.67 SS G_CDS: 1.12 Total: -5.55 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: 4.20 Total: 11.67 kcal Atomic # 8 Polarization: -1.34 SS G_CDS: -2.77 Total: -4.11 kcal Atomic # 14 Polarization: -10.02 SS G_CDS: 2.64 Total: -7.38 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -0.08 Total: -0.61 kcal Total: -11.09 5.10 -5.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_2162996_18051908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.443 kcal (2) G-P(sol) polarization free energy of solvation -11.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds