Wall clock time and date at job start Sat Mar 6 2021 00:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 C 1.52995 * 109.47643 * 190.93802 * 6 5 4 8 8 O 1.42901 * 109.47074 * 293.54788 * 7 6 5 9 9 C 1.35900 * 117.00200 * 179.97438 * 8 7 6 10 10 C 1.38716 * 120.05639 * 359.72293 * 9 8 7 11 11 C 1.38166 * 119.94609 * 179.79011 * 10 9 8 12 12 C 1.50693 * 119.97249 * 180.22649 * 11 10 9 13 13 O 1.42904 * 109.46948 * 65.25812 * 12 11 10 14 14 Si 1.86304 * 109.47290 * 185.25572 * 12 11 10 15 15 H 1.48501 * 109.46829 * 300.00652 * 14 12 11 16 16 H 1.48500 * 109.46888 * 59.99989 * 14 12 11 17 17 H 1.48497 * 109.47026 * 180.02562 * 14 12 11 18 18 C 1.38244 * 120.05328 * 0.48865 * 11 10 9 19 19 C 1.38288 * 120.11420 * 359.74005 * 18 11 10 20 20 C 1.38123 * 120.05188 * 0.02562 * 19 18 11 21 21 N 1.48009 * 120.02650 * 179.97438 * 20 19 18 22 22 O 1.21804 * 119.99820 * 0.02562 * 21 20 19 23 23 O 1.21802 * 120.00292 * 180.02562 * 21 20 19 24 24 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 25 25 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 26 26 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 27 27 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 29 29 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 31 31 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 32 32 H 1.08999 * 111.05229 * 356.11516 * 4 2 1 33 33 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 34 34 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 35 35 H 1.09004 * 109.47418 * 70.93608 * 6 5 4 36 36 H 1.09007 * 109.46916 * 53.54343 * 7 6 5 37 37 H 1.09005 * 109.47687 * 173.54545 * 7 6 5 38 38 H 1.07999 * 120.02692 * 0.02562 * 10 9 8 39 39 H 1.09004 * 109.47643 * 305.25867 * 12 11 10 40 40 H 0.96698 * 113.99775 * 179.97438 * 13 12 11 41 41 H 1.07996 * 119.94407 * 179.76552 * 18 11 10 42 42 H 1.07997 * 119.97602 * 180.02562 * 19 18 11 43 43 H 1.08996 * 111.41269 * 283.05303 * 24 6 5 44 44 H 1.09006 * 111.49251 * 158.06559 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1417 -2.9771 -1.5067 8 8 5.3027 -3.5593 -0.9107 9 6 5.8104 -4.6706 -1.5059 10 6 5.2004 -5.1932 -2.6368 11 6 5.7211 -6.3206 -3.2426 12 6 5.0619 -6.8859 -4.4741 13 8 5.1755 -5.9495 -5.5476 14 14 5.8990 -8.4808 -4.9501 15 1 7.3340 -8.2218 -5.2313 16 1 5.7810 -9.4538 -3.8346 17 1 5.2498 -9.0375 -6.1640 18 6 6.8431 -6.9335 -2.7168 19 6 7.4504 -6.4172 -1.5867 20 6 6.9366 -5.2876 -0.9802 21 7 7.5866 -4.7358 0.2296 22 8 8.5754 -5.2776 0.6905 23 8 7.1329 -3.7399 0.7643 24 6 2.5568 -1.0142 -1.4447 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.1907 2.2612 0.8899 29 1 3.6274 1.7027 -0.0005 30 1 2.1908 2.2612 -0.8900 31 1 3.2797 -0.4330 2.0151 32 1 1.7543 -1.3786 2.0840 33 1 4.1055 -2.5196 1.2701 34 1 2.5407 -3.0054 0.5873 35 1 4.5675 -1.0680 -0.6042 36 1 3.3305 -3.7052 -1.5088 37 1 4.3683 -2.6826 -2.5315 38 1 4.3214 -4.7172 -3.0456 39 1 4.0085 -7.0760 -4.2678 40 1 4.7723 -6.2481 -6.3743 41 1 7.2464 -7.8168 -3.1895 42 1 8.3271 -6.8975 -1.1780 43 1 1.8198 -1.7216 -1.8246 44 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_7_2392260_18051908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:56:09 Heat of formation + Delta-G solvation = -94.414904 kcal Electronic energy + Delta-G solvation = -25843.142184 eV Core-core repulsion = 22080.359748 eV Total energy + Delta-G solvation = -3762.782436 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.97299 -41.51440 -39.65316 -37.89167 -37.22212 -36.69717 -33.61838 -31.78957 -30.66204 -29.27230 -28.76930 -28.54240 -27.58620 -25.47948 -24.50265 -23.56899 -22.72893 -20.91622 -20.32341 -19.40861 -19.00359 -18.68887 -18.27413 -17.51936 -17.11603 -16.80929 -16.37496 -15.88362 -15.79760 -15.33705 -14.94692 -14.58360 -14.50785 -14.13231 -13.99596 -13.97416 -13.83190 -13.62692 -13.41502 -13.32282 -13.17829 -12.87492 -12.71803 -12.40717 -12.31848 -12.26687 -12.22332 -12.02531 -11.84222 -11.77185 -11.71249 -11.43399 -10.92015 -10.84677 -10.63949 -10.56583 -10.36707 -9.81514 -1.09207 -0.17853 0.40637 0.60101 0.81463 1.20356 1.27228 1.47708 1.66177 1.75936 1.82455 1.86411 2.02840 2.49792 2.86876 3.17133 3.28383 3.54113 3.62936 3.67367 3.75277 3.84967 3.95748 4.01726 4.18847 4.26672 4.39077 4.41040 4.52327 4.54933 4.57198 4.65089 4.65955 4.68271 4.70996 4.72183 4.84007 5.01296 5.04828 5.09222 5.34082 5.38549 5.43035 5.48426 5.49820 5.57261 5.92060 6.23051 6.95328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.442 4.442 2 Si 0.970 3.030 3 C -0.443 4.443 4 C -0.398 4.398 5 C -0.112 4.112 6 C -0.081 4.081 7 C 0.057 3.943 8 O -0.276 6.276 9 C 0.203 3.797 10 C -0.188 4.188 11 C 0.018 3.982 12 C -0.094 4.094 13 O -0.541 6.541 14 Si 0.945 3.055 15 H -0.242 1.242 16 H -0.244 1.244 17 H -0.249 1.249 18 C -0.165 4.165 19 C -0.010 4.010 20 C -0.082 4.082 21 N 0.035 4.965 22 O -0.179 6.179 23 O -0.132 6.132 24 C -0.394 4.394 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.155 0.845 39 H 0.088 0.912 40 H 0.387 0.613 41 H 0.145 0.855 42 H 0.164 0.836 43 H 0.081 0.919 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.429 -1.777 -5.333 7.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.550 4.550 2 Si 1.167 2.833 3 C -0.551 4.551 4 C -0.484 4.484 5 C -0.149 4.149 6 C -0.100 4.100 7 C -0.017 4.017 8 O -0.187 6.187 9 C 0.153 3.847 10 C -0.207 4.207 11 C 0.017 3.983 12 C -0.203 4.203 13 O -0.348 6.348 14 Si 0.766 3.234 15 H -0.165 1.165 16 H -0.167 1.167 17 H -0.173 1.173 18 C -0.183 4.183 19 C -0.029 4.029 20 C -0.166 4.166 21 N 0.554 4.446 22 O -0.388 6.388 23 O -0.354 6.354 24 C -0.479 4.479 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.173 0.827 39 H 0.105 0.895 40 H 0.235 0.765 41 H 0.162 0.838 42 H 0.182 0.818 43 H 0.100 0.900 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.956 -2.348 -5.503 7.769 hybrid contribution -0.390 0.069 -0.254 0.471 sum -5.346 -2.279 -5.757 8.181 Atomic orbital electron populations 1.26015 1.19951 1.04543 1.04521 0.80481 0.67346 0.67618 0.67827 1.26018 1.06779 1.17799 1.04518 1.26500 1.05529 1.06254 1.10102 1.21728 1.00935 0.98113 0.94127 1.21710 0.98904 0.94650 0.94688 1.23317 0.85123 0.95640 0.97635 1.86440 1.43973 1.36829 1.51439 1.18658 0.89597 0.86252 0.90194 1.21165 1.04034 0.99215 0.96266 1.19486 0.92570 0.92912 0.93327 1.24888 1.04649 1.03060 0.87753 1.86496 1.82374 1.44177 1.21704 0.85719 0.81230 0.74746 0.81695 1.16523 1.16724 1.17321 1.20924 0.96898 1.02784 0.97745 1.20860 0.98522 0.90811 0.92663 1.20569 0.99684 1.02250 0.94122 1.43287 1.00012 1.00131 1.01173 1.94548 1.15604 1.62174 1.66474 1.94604 1.66370 1.13835 1.60590 1.26852 1.02541 1.07839 1.10708 0.91170 0.91073 0.91103 0.91013 0.90934 0.91206 0.90302 0.90367 0.90598 0.92236 0.89280 0.91214 0.91019 0.82745 0.89457 0.76456 0.83772 0.81810 0.89987 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.91 8.65 101.05 0.87 1.79 16 2 Si 0.97 -2.84 13.35 -169.99 -2.27 -5.11 16 3 C -0.44 0.74 8.65 101.05 0.87 1.62 16 4 C -0.40 0.41 5.85 38.29 0.22 0.63 16 5 C -0.11 0.01 5.21 -25.30 -0.13 -0.13 16 6 C -0.08 0.06 2.40 -88.69 -0.21 -0.15 16 7 C 0.06 -0.03 4.11 37.15 0.15 0.12 16 8 O -0.28 -0.68 7.93 -41.54 -0.33 -1.01 16 9 C 0.20 0.44 6.67 -39.22 -0.26 0.18 16 10 C -0.19 0.00 8.68 -39.43 -0.34 -0.34 16 11 C 0.02 -0.01 5.38 -104.65 -0.56 -0.57 16 12 C -0.09 0.27 2.79 36.00 0.10 0.37 16 13 O -0.54 1.24 12.81 -35.23 -0.45 0.79 16 14 Si 0.95 -2.71 25.14 -169.99 -4.27 -6.98 16 15 H -0.24 0.37 7.04 56.52 0.40 0.76 16 16 H -0.24 0.56 7.11 56.52 0.40 0.96 16 17 H -0.25 0.65 7.11 56.52 0.40 1.05 16 18 C -0.16 0.09 8.67 -39.56 -0.34 -0.26 16 19 C -0.01 -0.01 9.55 -39.61 -0.38 -0.39 16 20 C -0.08 -0.27 6.87 -79.80 -0.55 -0.82 16 21 N 0.04 0.21 4.45 34.03 0.15 0.36 16 22 O -0.18 -1.18 18.45 -29.46 -0.54 -1.73 16 23 O -0.13 -0.95 17.24 -36.49 -0.63 -1.58 16 24 C -0.39 0.98 5.30 38.80 0.21 1.19 16 25 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 26 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 27 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 28 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 29 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 30 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 31 H 0.08 -0.04 8.04 -51.93 -0.42 -0.46 16 32 H 0.08 -0.09 8.04 -51.93 -0.42 -0.50 16 33 H 0.08 0.14 8.12 -51.93 -0.42 -0.28 16 34 H 0.06 -0.03 8.04 -51.93 -0.42 -0.45 16 35 H 0.09 -0.02 8.14 -51.93 -0.42 -0.44 16 36 H 0.07 -0.14 7.58 -51.93 -0.39 -0.54 16 37 H 0.07 -0.11 7.68 -51.93 -0.40 -0.51 16 38 H 0.16 -0.30 6.30 -52.49 -0.33 -0.63 16 39 H 0.09 -0.43 7.96 -51.93 -0.41 -0.84 16 40 H 0.39 -2.56 8.74 45.56 0.40 -2.17 16 41 H 0.14 -0.35 4.86 -52.49 -0.25 -0.61 16 42 H 0.16 -0.12 7.61 -52.49 -0.40 -0.52 16 43 H 0.08 -0.25 8.03 -51.93 -0.42 -0.67 16 44 H 0.08 -0.23 8.06 -51.93 -0.42 -0.65 16 LS Contribution 364.37 15.07 5.49 5.49 Total: 0.00 -7.02 364.37 -9.21 -16.23 By element: Atomic # 1 Polarization: -3.70 SS G_CDS: -6.00 Total: -9.71 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -0.35 Total: 3.24 kcal Atomic # 7 Polarization: 0.21 SS G_CDS: 0.15 Total: 0.36 kcal Atomic # 8 Polarization: -1.58 SS G_CDS: -1.95 Total: -3.53 kcal Atomic # 14 Polarization: -5.55 SS G_CDS: -6.54 Total: -12.09 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -7.02 -9.21 -16.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_2392260_18051908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.187 kcal (2) G-P(sol) polarization free energy of solvation -7.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds