Wall clock time and date at job start Sat Mar 6 2021 00:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 C 1.52995 * 109.47643 * 190.93802 * 6 5 4 8 8 O 1.42901 * 109.47074 * 293.54788 * 7 6 5 9 9 C 1.35900 * 117.00200 * 179.97438 * 8 7 6 10 10 C 1.38716 * 120.05639 * 359.72293 * 9 8 7 11 11 C 1.38166 * 119.94609 * 179.79011 * 10 9 8 12 12 C 1.50693 * 119.97249 * 180.22649 * 11 10 9 13 13 O 1.42904 * 109.46948 * 65.25812 * 12 11 10 14 14 Si 1.86304 * 109.47290 * 185.25572 * 12 11 10 15 15 H 1.48501 * 109.46829 * 300.00652 * 14 12 11 16 16 H 1.48500 * 109.46888 * 59.99989 * 14 12 11 17 17 H 1.48497 * 109.47026 * 180.02562 * 14 12 11 18 18 C 1.38244 * 120.05328 * 0.48865 * 11 10 9 19 19 C 1.38288 * 120.11420 * 359.74005 * 18 11 10 20 20 C 1.38123 * 120.05188 * 0.02562 * 19 18 11 21 21 N 1.48009 * 120.02650 * 179.97438 * 20 19 18 22 22 O 1.21804 * 119.99820 * 0.02562 * 21 20 19 23 23 O 1.21802 * 120.00292 * 180.02562 * 21 20 19 24 24 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 25 25 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 26 26 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 27 27 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 29 29 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 31 31 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 32 32 H 1.08999 * 111.05229 * 356.11516 * 4 2 1 33 33 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 34 34 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 35 35 H 1.09004 * 109.47418 * 70.93608 * 6 5 4 36 36 H 1.09007 * 109.46916 * 53.54343 * 7 6 5 37 37 H 1.09005 * 109.47687 * 173.54545 * 7 6 5 38 38 H 1.07999 * 120.02692 * 0.02562 * 10 9 8 39 39 H 1.09004 * 109.47643 * 305.25867 * 12 11 10 40 40 H 0.96698 * 113.99775 * 179.97438 * 13 12 11 41 41 H 1.07996 * 119.94407 * 179.76552 * 18 11 10 42 42 H 1.07997 * 119.97602 * 180.02562 * 19 18 11 43 43 H 1.08996 * 111.41269 * 283.05303 * 24 6 5 44 44 H 1.09006 * 111.49251 * 158.06559 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1417 -2.9771 -1.5067 8 8 5.3027 -3.5593 -0.9107 9 6 5.8104 -4.6706 -1.5059 10 6 5.2004 -5.1932 -2.6368 11 6 5.7211 -6.3206 -3.2426 12 6 5.0619 -6.8859 -4.4741 13 8 5.1755 -5.9495 -5.5476 14 14 5.8990 -8.4808 -4.9501 15 1 7.3340 -8.2218 -5.2313 16 1 5.7810 -9.4538 -3.8346 17 1 5.2498 -9.0375 -6.1640 18 6 6.8431 -6.9335 -2.7168 19 6 7.4504 -6.4172 -1.5867 20 6 6.9366 -5.2876 -0.9802 21 7 7.5866 -4.7358 0.2296 22 8 8.5754 -5.2776 0.6905 23 8 7.1329 -3.7399 0.7643 24 6 2.5568 -1.0142 -1.4447 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.1907 2.2612 0.8899 29 1 3.6274 1.7027 -0.0005 30 1 2.1908 2.2612 -0.8900 31 1 3.2797 -0.4330 2.0151 32 1 1.7543 -1.3786 2.0840 33 1 4.1055 -2.5196 1.2701 34 1 2.5407 -3.0054 0.5873 35 1 4.5675 -1.0680 -0.6042 36 1 3.3305 -3.7052 -1.5088 37 1 4.3683 -2.6826 -2.5315 38 1 4.3214 -4.7172 -3.0456 39 1 4.0085 -7.0760 -4.2678 40 1 4.7723 -6.2481 -6.3743 41 1 7.2464 -7.8168 -3.1895 42 1 8.3271 -6.8975 -1.1780 43 1 1.8198 -1.7216 -1.8246 44 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_2392260_18051908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:56:09 Heat of formation + Delta-G solvation = -86.624966 kcal Electronic energy + Delta-G solvation = -25842.804387 eV Core-core repulsion = 22080.359748 eV Total energy + Delta-G solvation = -3762.444639 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.29525 -41.61208 -39.63046 -37.71153 -37.61189 -36.67939 -33.65197 -31.80090 -30.60038 -29.10543 -28.85943 -28.36906 -27.49598 -25.56820 -24.45496 -23.55428 -22.78640 -20.94643 -20.46398 -19.77813 -18.93788 -18.66752 -18.46884 -17.52582 -17.12837 -16.74560 -16.22343 -15.85688 -15.75375 -15.26876 -14.75541 -14.49147 -14.40815 -14.08746 -13.84006 -13.82480 -13.71166 -13.47855 -13.32084 -13.16431 -13.09770 -12.76558 -12.70080 -12.60031 -12.40664 -12.27665 -12.23043 -12.12287 -12.01128 -11.85752 -11.69210 -11.38667 -10.80518 -10.75841 -10.46533 -10.36908 -10.27448 -9.84948 -1.32227 -0.18813 0.13044 0.34686 1.06663 1.45372 1.51607 1.59501 1.84197 1.90788 2.00365 2.01141 2.06307 2.64483 3.02929 3.15301 3.40372 3.55474 3.72859 3.76826 3.84446 3.92778 4.04383 4.22503 4.28839 4.32302 4.46909 4.50422 4.54154 4.56882 4.68364 4.73128 4.81901 4.83858 4.86484 4.86877 4.88187 5.04620 5.12790 5.21841 5.23743 5.35269 5.48702 5.52873 5.60747 5.65946 5.90370 6.47791 6.73108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.043 2.957 3 C -0.460 4.460 4 C -0.420 4.420 5 C -0.112 4.112 6 C -0.083 4.083 7 C 0.049 3.951 8 O -0.298 6.298 9 C 0.194 3.806 10 C -0.184 4.184 11 C 0.020 3.980 12 C -0.090 4.090 13 O -0.557 6.557 14 Si 0.971 3.029 15 H -0.264 1.264 16 H -0.252 1.252 17 H -0.250 1.250 18 C -0.163 4.163 19 C -0.012 4.012 20 C -0.107 4.107 21 N 0.039 4.961 22 O -0.195 6.195 23 O -0.172 6.172 24 C -0.393 4.393 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.044 0.956 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.178 0.822 39 H 0.117 0.883 40 H 0.406 0.594 41 H 0.163 0.837 42 H 0.174 0.826 43 H 0.096 0.904 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.238 -2.441 -7.684 10.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.236 2.764 3 C -0.567 4.567 4 C -0.504 4.504 5 C -0.149 4.149 6 C -0.102 4.102 7 C -0.024 4.024 8 O -0.209 6.209 9 C 0.144 3.856 10 C -0.203 4.203 11 C 0.020 3.980 12 C -0.199 4.199 13 O -0.368 6.368 14 Si 0.794 3.206 15 H -0.189 1.189 16 H -0.176 1.176 17 H -0.173 1.173 18 C -0.182 4.182 19 C -0.031 4.031 20 C -0.192 4.192 21 N 0.550 4.450 22 O -0.404 6.404 23 O -0.387 6.387 24 C -0.478 4.478 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.195 0.805 39 H 0.135 0.865 40 H 0.258 0.742 41 H 0.181 0.819 42 H 0.192 0.808 43 H 0.115 0.885 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.778 -2.979 -7.821 10.770 hybrid contribution 0.169 0.210 0.401 0.483 sum -6.610 -2.769 -7.421 10.316 Atomic orbital electron populations 1.26123 1.20423 1.04759 1.04650 0.79384 0.66019 0.65452 0.65547 1.26232 1.06518 1.19328 1.04628 1.26785 1.05435 1.06688 1.11461 1.21722 0.99916 0.98734 0.94564 1.21718 0.99245 0.94728 0.94470 1.23574 0.84819 0.95966 0.98071 1.86440 1.45053 1.37091 1.52321 1.18892 0.89494 0.86370 0.90841 1.21410 1.04425 0.99265 0.95209 1.19897 0.92035 0.92251 0.93863 1.24891 1.06085 1.02248 0.86711 1.86450 1.82950 1.44593 1.22763 0.85350 0.79647 0.74415 0.81185 1.18881 1.17558 1.17345 1.21198 0.96807 1.03170 0.97007 1.21078 0.98937 0.90111 0.92969 1.20839 1.00941 1.03807 0.93626 1.43682 0.99724 0.99741 1.01820 1.94503 1.16357 1.62161 1.67345 1.94588 1.66972 1.15077 1.62044 1.26908 1.01908 1.08063 1.10955 0.90660 0.91357 0.90853 0.91313 0.91622 0.90704 0.91456 0.90387 0.93666 0.91605 0.90565 0.89379 0.89662 0.80513 0.86523 0.74231 0.81945 0.80840 0.88490 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.35 8.65 113.37 0.98 3.33 16 2 Si 1.04 -6.44 13.35 68.60 0.92 -5.52 16 3 C -0.46 1.45 8.65 113.37 0.98 2.43 16 4 C -0.42 0.26 5.85 72.72 0.43 0.68 16 5 C -0.11 -0.17 5.21 31.52 0.16 -0.01 16 6 C -0.08 0.09 2.40 -9.54 -0.02 0.06 16 7 C 0.05 -0.07 4.11 71.98 0.30 0.23 16 8 O -0.30 -1.90 7.93 -71.27 -0.57 -2.46 16 9 C 0.19 0.99 6.67 22.51 0.15 1.14 16 10 C -0.18 0.22 8.68 22.37 0.19 0.41 16 11 C 0.02 -0.05 5.38 -19.88 -0.11 -0.16 16 12 C -0.09 0.73 2.79 71.23 0.20 0.93 16 13 O -0.56 3.95 12.81 -148.98 -1.91 2.04 16 14 Si 0.97 -7.12 25.14 68.60 1.72 -5.40 16 15 H -0.26 0.97 7.04 99.48 0.70 1.67 16 16 H -0.25 1.51 7.11 99.48 0.71 2.21 16 17 H -0.25 1.78 7.11 99.48 0.71 2.48 16 18 C -0.16 0.29 8.67 22.28 0.19 0.48 16 19 C -0.01 -0.03 9.55 22.25 0.21 0.18 16 20 C -0.11 -0.87 6.87 36.47 0.25 -0.62 16 21 N 0.04 0.58 4.45 -46.24 -0.21 0.37 16 22 O -0.20 -3.11 18.45 18.88 0.35 -2.76 16 23 O -0.17 -3.11 17.24 25.60 0.44 -2.67 16 24 C -0.39 2.45 5.30 73.05 0.39 2.83 16 25 H 0.07 -0.43 7.96 -2.39 -0.02 -0.45 16 26 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 27 H 0.07 -0.39 7.96 -2.38 -0.02 -0.41 16 28 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 29 H 0.06 -0.11 7.96 -2.39 -0.02 -0.13 16 30 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 31 H 0.07 0.09 8.04 -2.39 -0.02 0.07 16 32 H 0.08 -0.08 8.04 -2.39 -0.02 -0.10 16 33 H 0.04 0.33 8.12 -2.39 -0.02 0.31 16 34 H 0.07 -0.01 8.04 -2.39 -0.02 -0.03 16 35 H 0.08 0.10 8.14 -2.39 -0.02 0.08 16 36 H 0.09 -0.47 7.58 -2.38 -0.02 -0.49 16 37 H 0.09 -0.36 7.68 -2.38 -0.02 -0.38 16 38 H 0.18 -1.11 6.30 -2.91 -0.02 -1.13 16 39 H 0.12 -1.57 7.96 -2.38 -0.02 -1.59 16 40 H 0.41 -6.44 8.74 -74.06 -0.65 -7.09 16 41 H 0.16 -0.96 4.86 -2.91 -0.01 -0.98 16 42 H 0.17 -0.10 7.61 -2.91 -0.02 -0.13 16 43 H 0.10 -0.84 8.03 -2.39 -0.02 -0.86 16 44 H 0.09 -0.67 8.06 -2.38 -0.02 -0.69 16 Total: 0.00 -19.07 364.37 6.16 -12.91 By element: Atomic # 1 Polarization: -9.54 SS G_CDS: 1.11 Total: -8.43 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 4.30 Total: 11.92 kcal Atomic # 7 Polarization: 0.58 SS G_CDS: -0.21 Total: 0.37 kcal Atomic # 8 Polarization: -4.17 SS G_CDS: -1.68 Total: -5.86 kcal Atomic # 14 Polarization: -13.56 SS G_CDS: 2.64 Total: -10.92 kcal Total: -19.07 6.16 -12.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_2392260_18051908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.713 kcal (2) G-P(sol) polarization free energy of solvation -19.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds