Wall clock time and date at job start Sat Mar 6 2021 01:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 C 1.52995 * 109.47643 * 190.93802 * 6 5 4 8 8 O 1.42901 * 109.47074 * 293.54788 * 7 6 5 9 9 C 1.35879 * 116.99876 * 179.97438 * 8 7 6 10 10 C 1.38806 * 119.93851 * 359.71984 * 9 8 7 11 11 C 1.37925 * 120.06577 * 179.76332 * 10 9 8 12 12 C 1.39356 * 119.93298 * 0.54013 * 11 10 9 13 13 C 1.48358 * 120.06409 * 179.69903 * 12 11 10 14 14 C 1.39356 * 120.12501 * 179.74491 * 13 12 11 15 15 C 1.38015 * 119.87950 * 179.71997 * 14 13 12 16 16 C 1.38322 * 120.11743 * 0.55513 * 15 14 13 17 17 C 1.38326 * 120.25012 * 359.71928 * 16 15 14 18 18 C 1.38013 * 120.12241 * 0.02562 * 17 16 15 19 19 C 1.39394 * 119.87248 * 359.71520 * 12 11 10 20 20 C 1.37893 * 119.93174 * 0.02562 * 19 12 11 21 21 C 1.50703 * 119.96594 * 179.97438 * 20 19 12 22 22 O 1.42897 * 109.46968 * 105.02434 * 21 20 19 23 23 Si 1.86299 * 109.47112 * 345.02739 * 21 20 19 24 24 H 1.48494 * 109.47449 * 59.99755 * 23 21 20 25 25 H 1.48500 * 109.47138 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47052 * 299.99534 * 23 21 20 27 27 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 28 28 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 29 29 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 30 30 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 32 32 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 34 34 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 35 35 H 1.08999 * 111.05229 * 356.11516 * 4 2 1 36 36 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 37 37 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 38 38 H 1.09004 * 109.47418 * 70.93608 * 6 5 4 39 39 H 1.09007 * 109.46916 * 53.54343 * 7 6 5 40 40 H 1.09005 * 109.47687 * 173.54545 * 7 6 5 41 41 H 1.08008 * 119.96301 * 0.02562 * 10 9 8 42 42 H 1.07999 * 120.03028 * 180.23460 * 11 10 9 43 43 H 1.08002 * 120.05542 * 359.97249 * 14 13 12 44 44 H 1.07993 * 119.93988 * 180.27089 * 15 14 13 45 45 H 1.07999 * 119.87369 * 179.74434 * 16 15 14 46 46 H 1.08005 * 119.93528 * 179.97438 * 17 16 15 47 47 H 1.07999 * 120.06071 * 180.02562 * 18 17 16 48 48 H 1.07999 * 120.03807 * 179.97438 * 19 12 11 49 49 H 1.08991 * 109.46977 * 225.02440 * 21 20 19 50 50 H 0.96697 * 114.00511 * 59.99542 * 22 21 20 51 51 H 1.08996 * 111.41269 * 283.05303 * 27 6 5 52 52 H 1.09006 * 111.49251 * 158.06559 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1417 -2.9771 -1.5067 8 8 5.3027 -3.5593 -0.9107 9 6 5.8103 -4.6704 -1.5059 10 6 5.1978 -5.1913 -2.6373 11 6 5.7137 -6.3161 -3.2464 12 6 6.8444 -6.9363 -2.7182 13 6 7.3978 -8.1502 -3.3671 14 6 8.5316 -8.7682 -2.8431 15 6 9.0387 -9.9007 -3.4474 16 6 8.4305 -10.4156 -4.5780 17 6 7.3082 -9.8029 -5.1059 18 6 6.7895 -8.6731 -4.5066 19 6 7.4542 -6.4139 -1.5787 20 6 6.9371 -5.2860 -0.9773 21 6 7.5954 -4.7210 0.2550 22 8 8.3233 -3.5414 -0.0922 23 14 8.7640 -5.9840 0.9692 24 1 9.8030 -6.3216 -0.0364 25 1 9.4122 -5.4275 2.1839 26 1 8.0075 -7.2099 1.3302 27 6 2.5568 -1.0142 -1.4447 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 2.1907 2.2612 0.8899 32 1 3.6274 1.7027 -0.0005 33 1 2.1908 2.2612 -0.8900 34 1 3.2797 -0.4330 2.0151 35 1 1.7543 -1.3786 2.0840 36 1 4.1055 -2.5196 1.2701 37 1 2.5407 -3.0054 0.5873 38 1 4.5675 -1.0680 -0.6042 39 1 3.3305 -3.7052 -1.5088 40 1 4.3683 -2.6826 -2.5315 41 1 4.3189 -4.7128 -3.0436 42 1 5.2389 -6.7187 -4.1289 43 1 9.0100 -8.3641 -1.9632 44 1 9.9147 -10.3829 -3.0396 45 1 8.8331 -11.2995 -5.0502 46 1 6.8376 -10.2091 -5.9891 47 1 5.9130 -8.1958 -4.9193 48 1 8.3304 -6.8926 -1.1669 49 1 6.8327 -4.4733 0.9932 50 1 7.7770 -2.8393 -0.4712 51 1 1.8198 -1.7216 -1.8246 52 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_7_2516928_18051908.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:06:05 Heat of formation + Delta-G solvation = -77.552107 kcal Electronic energy + Delta-G solvation = -28962.247461 eV Core-core repulsion = 25207.232886 eV Total energy + Delta-G solvation = -3755.014575 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 356.172 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.58428 -40.17482 -38.77297 -37.36377 -36.69421 -33.29743 -32.81051 -31.71877 -30.80952 -29.40638 -29.26401 -28.57416 -27.38151 -26.69369 -24.55703 -24.07959 -23.69620 -22.32447 -21.49671 -20.75420 -19.41375 -18.26546 -17.98158 -17.32025 -17.07345 -16.77085 -16.07880 -15.91482 -15.69227 -15.51198 -15.31094 -15.08930 -14.95407 -14.59488 -14.36442 -14.16147 -14.04913 -14.03001 -13.99554 -13.91900 -13.62638 -13.58080 -13.37493 -13.22106 -13.06400 -12.88132 -12.69870 -12.35796 -12.21433 -12.14554 -12.08030 -11.91297 -11.72330 -11.65696 -11.48111 -11.06758 -10.95608 -10.91844 -10.64542 -10.43005 -10.22863 -9.95665 -9.85636 -8.64903 -0.23838 0.23501 0.50070 0.94553 1.27267 1.48920 1.56660 1.60008 1.78300 1.80751 2.03173 2.13715 2.47324 2.57143 3.10466 3.53640 3.61692 3.66534 3.71059 3.86264 3.94895 3.98914 4.05118 4.07312 4.14094 4.16285 4.28120 4.29568 4.37122 4.45657 4.47809 4.49543 4.56238 4.60901 4.62295 4.62937 4.66006 4.67361 4.68160 4.70247 4.83891 4.97706 4.98828 5.06424 5.12428 5.21163 5.24367 5.27106 5.32206 5.33776 5.37312 5.43688 5.45489 5.53966 5.62429 5.69901 5.76810 6.06685 6.35081 6.68394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 0.970 3.030 3 C -0.443 4.443 4 C -0.399 4.399 5 C -0.109 4.109 6 C -0.082 4.082 7 C 0.066 3.934 8 O -0.312 6.312 9 C 0.148 3.852 10 C -0.202 4.202 11 C -0.064 4.064 12 C -0.077 4.077 13 C -0.039 4.039 14 C -0.116 4.116 15 C -0.114 4.114 16 C -0.121 4.121 17 C -0.115 4.115 18 C -0.114 4.114 19 C -0.074 4.074 20 C -0.143 4.143 21 C -0.080 4.080 22 O -0.537 6.537 23 Si 1.007 2.993 24 H -0.251 1.251 25 H -0.254 1.254 26 H -0.247 1.247 27 C -0.394 4.394 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.122 0.878 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.125 0.875 48 H 0.132 0.868 49 H 0.077 0.923 50 H 0.369 0.631 51 H 0.081 0.919 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.330 0.745 -1.037 3.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.167 2.833 3 C -0.551 4.551 4 C -0.485 4.485 5 C -0.147 4.147 6 C -0.101 4.101 7 C -0.009 4.009 8 O -0.226 6.226 9 C 0.102 3.898 10 C -0.221 4.221 11 C -0.082 4.082 12 C -0.077 4.077 13 C -0.039 4.039 14 C -0.134 4.134 15 C -0.132 4.132 16 C -0.139 4.139 17 C -0.133 4.133 18 C -0.132 4.132 19 C -0.092 4.092 20 C -0.144 4.144 21 C -0.189 4.189 22 O -0.343 6.343 23 Si 0.827 3.173 24 H -0.175 1.175 25 H -0.178 1.178 26 H -0.170 1.170 27 C -0.479 4.479 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.151 0.849 42 H 0.149 0.851 43 H 0.140 0.860 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.143 0.857 48 H 0.150 0.850 49 H 0.095 0.905 50 H 0.217 0.783 51 H 0.100 0.900 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.244 -0.058 -0.291 2.264 hybrid contribution -1.032 0.551 -0.830 1.434 sum -3.276 0.493 -1.120 3.497 Atomic orbital electron populations 1.26021 1.19974 1.04585 1.04529 0.80478 0.67408 0.67549 0.67835 1.26020 1.06687 1.17857 1.04549 1.26511 1.05544 1.06320 1.10153 1.21710 1.00667 0.98155 0.94143 1.21700 0.98716 0.95019 0.94651 1.23046 0.85738 0.95020 0.97104 1.86033 1.44284 1.39063 1.53204 1.18829 0.92402 0.86929 0.91656 1.21210 1.03054 0.99931 0.97919 1.21054 0.94415 0.94003 0.98744 1.18586 0.96834 0.95949 0.96354 1.18711 0.95523 0.94267 0.95421 1.21245 0.95893 0.96109 1.00188 1.21128 1.00004 0.96060 0.96016 1.21261 0.96117 1.00104 0.96395 1.21128 0.96483 0.95737 0.99969 1.21213 1.00058 0.96571 0.95344 1.21002 0.98779 0.94639 0.94785 1.19528 0.96475 0.97810 1.00552 1.25161 1.02810 0.94717 0.96178 1.86677 1.37591 1.25175 1.84848 0.84583 0.77746 0.75569 0.79429 1.17522 1.17777 1.17025 1.26831 1.02663 1.07834 1.10599 0.91139 0.91101 0.91071 0.91043 0.91010 0.91159 0.90470 0.90352 0.91269 0.92047 0.89700 0.91777 0.91696 0.84906 0.85113 0.85972 0.85674 0.85855 0.85733 0.85749 0.85023 0.90483 0.78338 0.89980 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.97 8.65 101.05 0.87 1.84 16 2 Si 0.97 -3.23 13.35 -169.99 -2.27 -5.50 16 3 C -0.44 0.94 8.65 101.05 0.87 1.81 16 4 C -0.40 0.70 5.85 38.29 0.22 0.93 16 5 C -0.11 0.11 5.21 -25.30 -0.13 -0.02 16 6 C -0.08 0.13 2.40 -88.69 -0.21 -0.08 16 7 C 0.07 -0.06 4.10 37.15 0.15 0.09 16 8 O -0.31 -0.29 8.80 -19.36 -0.17 -0.46 16 9 C 0.15 0.27 6.62 -39.14 -0.26 0.01 16 10 C -0.20 -0.19 9.02 -39.49 -0.36 -0.55 16 11 C -0.06 -0.08 9.42 -39.28 -0.37 -0.45 16 12 C -0.08 -0.19 5.88 -104.89 -0.62 -0.80 16 13 C -0.04 -0.09 5.88 -104.90 -0.62 -0.71 16 14 C -0.12 -0.24 9.43 -39.25 -0.37 -0.61 16 15 C -0.11 -0.14 10.03 -39.63 -0.40 -0.53 16 16 C -0.12 -0.11 10.04 -39.52 -0.40 -0.50 16 17 C -0.12 -0.10 10.03 -39.63 -0.40 -0.49 16 18 C -0.11 -0.15 9.43 -39.25 -0.37 -0.52 16 19 C -0.07 -0.19 8.03 -39.28 -0.32 -0.51 16 20 C -0.14 -0.35 5.27 -104.52 -0.55 -0.90 16 21 C -0.08 -0.15 2.33 36.01 0.08 -0.07 16 22 O -0.54 -1.42 12.65 -35.23 -0.45 -1.86 16 23 Si 1.01 1.54 25.74 -169.99 -4.38 -2.83 16 24 H -0.25 -0.46 6.73 56.52 0.38 -0.08 16 25 H -0.25 -0.60 7.11 56.52 0.40 -0.20 16 26 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 27 C -0.39 1.09 5.30 38.80 0.21 1.29 16 28 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 29 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 31 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 32 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 33 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 34 H 0.08 -0.12 8.04 -51.93 -0.42 -0.53 16 35 H 0.08 -0.13 8.04 -51.93 -0.42 -0.55 16 36 H 0.07 0.01 8.12 -51.93 -0.42 -0.41 16 37 H 0.06 -0.06 8.04 -51.93 -0.42 -0.48 16 38 H 0.08 -0.13 8.14 -51.93 -0.42 -0.56 16 39 H 0.06 -0.09 7.57 -51.93 -0.39 -0.49 16 40 H 0.06 -0.10 7.67 -51.93 -0.40 -0.50 16 41 H 0.13 -0.14 6.28 -52.48 -0.33 -0.47 16 42 H 0.13 -0.11 6.20 -52.49 -0.33 -0.44 16 43 H 0.12 0.10 6.20 -52.49 -0.33 -0.23 16 44 H 0.13 -0.09 8.06 -52.49 -0.42 -0.51 16 45 H 0.12 -0.12 8.06 -52.49 -0.42 -0.54 16 46 H 0.12 -0.14 8.06 -52.48 -0.42 -0.56 16 47 H 0.12 -0.07 6.20 -52.49 -0.33 -0.40 16 48 H 0.13 0.22 3.02 -52.49 -0.16 0.06 16 49 H 0.08 0.08 7.82 -51.93 -0.41 -0.33 16 50 H 0.37 0.19 8.59 45.56 0.39 0.58 16 51 H 0.08 -0.24 8.03 -51.93 -0.42 -0.66 16 52 H 0.08 -0.25 8.06 -51.93 -0.42 -0.66 16 LS Contribution 411.04 15.07 6.19 6.19 Total: 0.00 -4.58 411.04 -11.78 -16.36 By element: Atomic # 1 Polarization: -3.38 SS G_CDS: -7.77 Total: -11.15 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -2.95 Total: -0.75 kcal Atomic # 8 Polarization: -1.71 SS G_CDS: -0.62 Total: -2.32 kcal Atomic # 14 Polarization: -1.68 SS G_CDS: -6.65 Total: -8.33 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -4.58 -11.78 -16.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_2516928_18051908.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.191 kcal (2) G-P(sol) polarization free energy of solvation -4.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds