Wall clock time and date at job start Sat Mar 6 2021 01:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86307 * 1 3 3 C 1.86302 * 111.23922 * 2 1 4 4 C 1.89335 * 111.45807 * 125.06219 * 2 1 3 5 5 C 1.55152 * 101.34207 * 120.85665 * 4 2 1 6 6 C 1.53563 * 111.29422 * 331.41029 * 5 4 2 7 7 C 1.53003 * 109.47315 * 169.06364 * 6 5 4 8 8 O 1.42895 * 109.47110 * 66.45593 * 7 6 5 9 9 C 1.35903 * 117.00049 * 179.97438 * 8 7 6 10 10 C 1.38726 * 120.05472 * 359.73125 * 9 8 7 11 11 C 1.38146 * 119.94298 * 180.27535 * 10 9 8 12 12 C 1.38261 * 120.05809 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.94527 * 179.97438 * 12 11 10 14 14 O 1.42894 * 109.47056 * 245.01989 * 13 12 11 15 15 Si 1.86297 * 109.47141 * 5.02305 * 13 12 11 16 16 H 1.48496 * 109.47344 * 60.00027 * 15 13 12 17 17 H 1.48508 * 109.47098 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46752 * 299.99623 * 15 13 12 19 19 C 1.38270 * 120.11090 * 359.97438 * 12 11 10 20 20 C 1.38143 * 120.05378 * 0.02562 * 19 12 11 21 21 C 1.55923 * 109.50782 * 49.04068 * 6 5 4 22 22 H 1.08994 * 109.47076 * 294.93826 * 1 2 3 23 23 H 1.08999 * 109.46665 * 54.93672 * 1 2 3 24 24 H 1.09002 * 109.46771 * 174.93289 * 1 2 3 25 25 H 1.08998 * 109.47431 * 185.06713 * 3 2 1 26 26 H 1.08999 * 109.47061 * 305.06513 * 3 2 1 27 27 H 1.08999 * 109.47161 * 65.06275 * 3 2 1 28 28 H 1.08992 * 111.04553 * 2.84054 * 4 2 1 29 29 H 1.08998 * 111.08207 * 238.88373 * 4 2 1 30 30 H 1.09002 * 109.11909 * 210.92838 * 5 4 2 31 31 H 1.08998 * 109.12501 * 91.90064 * 5 4 2 32 32 H 1.09001 * 109.47500 * 289.06571 * 6 5 4 33 33 H 1.09000 * 109.47280 * 306.45406 * 7 6 5 34 34 H 1.08999 * 109.46797 * 186.45581 * 7 6 5 35 35 H 1.07998 * 120.02970 * 0.24234 * 10 9 8 36 36 H 1.08005 * 119.96788 * 179.97438 * 11 10 9 37 37 H 1.09004 * 109.46769 * 125.01919 * 13 12 11 38 38 H 0.96698 * 114.00399 * 59.99917 * 14 13 12 39 39 H 1.07993 * 119.97145 * 179.97438 * 19 12 11 40 40 H 1.08000 * 120.02832 * 179.97438 * 20 19 12 41 41 H 1.09000 * 111.42660 * 76.90399 * 21 6 5 42 42 H 1.08998 * 111.42875 * 201.84971 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.5380 1.7365 0.0000 4 6 2.5557 -1.0123 1.4423 5 6 3.3935 -2.0804 0.6910 6 6 2.8149 -2.3636 -0.7030 7 6 3.8088 -3.2048 -1.5065 8 8 3.9300 -4.4976 -0.9101 9 6 4.7800 -5.3748 -1.5060 10 6 5.4786 -5.0007 -2.6447 11 6 6.3376 -5.8961 -3.2519 12 6 6.5019 -7.1640 -2.7254 13 6 7.4392 -8.1389 -3.3901 14 8 6.6924 -9.2448 -3.9012 15 14 8.3281 -7.2898 -4.7900 16 1 9.1042 -6.1406 -4.2589 17 1 9.2513 -8.2507 -5.4455 18 1 7.3367 -6.8015 -5.7819 19 6 5.8076 -7.5389 -1.5900 20 6 4.9473 -6.6472 -0.9791 21 6 2.5569 -1.0159 -1.4434 22 1 -0.3633 0.4333 0.9318 23 1 -0.3632 0.5904 -0.8412 24 1 -0.3633 -1.0237 -0.0908 25 1 3.6237 1.7044 -0.0908 26 1 2.1193 2.2890 -0.8411 27 1 2.2657 2.2321 0.9318 28 1 1.7533 -1.4763 2.0158 29 1 3.1883 -0.3988 2.0838 30 1 3.3973 -3.0036 1.2704 31 1 4.4177 -1.7223 0.5866 32 1 1.8758 -2.9080 -0.6030 33 1 4.7817 -2.7133 -1.5094 34 1 3.4514 -3.3093 -2.5309 35 1 5.3506 -4.0105 -3.0564 36 1 6.8814 -5.6055 -4.1386 37 1 8.1669 -8.4973 -2.6620 38 1 6.0245 -8.9994 -4.5560 39 1 5.9373 -8.5299 -1.1809 40 1 4.4049 -6.9406 -0.0925 41 1 3.4839 -0.5864 -1.8232 42 1 1.8203 -1.1329 -2.2383 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_7_26799_18051908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:14:43 Heat of formation + Delta-G solvation = -101.368665 kcal Electronic energy + Delta-G solvation = -19506.277238 eV Core-core repulsion = 16574.209700 eV Total energy + Delta-G solvation = -2932.067538 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.141 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.23531 -39.32365 -37.43771 -36.48127 -32.25899 -31.63986 -30.62295 -29.29295 -28.56404 -27.55871 -26.00122 -24.49329 -23.40417 -22.21092 -20.81040 -19.24867 -18.29254 -17.14639 -16.97017 -16.56452 -16.10801 -15.82717 -15.59532 -15.28487 -14.98646 -14.50274 -14.39992 -14.03662 -13.99536 -13.87761 -13.68587 -13.64823 -13.49349 -13.35749 -13.24440 -12.72562 -12.33694 -12.29170 -12.21085 -12.10400 -11.99708 -11.67020 -11.49494 -11.40640 -10.94318 -10.62568 -10.40646 -10.37637 -9.98322 -9.11870 0.34765 0.37566 1.17067 1.42556 1.50644 1.51581 1.80078 1.82263 1.91520 2.23237 2.49525 2.72554 3.51074 3.66368 3.74284 3.85364 3.90322 3.96447 4.03024 4.26500 4.33591 4.42484 4.49031 4.51283 4.58813 4.61764 4.63827 4.64691 4.67388 4.68663 4.69744 4.76144 5.00155 5.01171 5.08506 5.22785 5.28346 5.35531 5.36108 5.39879 5.45729 5.46514 5.54997 5.78812 6.45969 6.57708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.442 4.442 2 Si 0.969 3.031 3 C -0.442 4.442 4 C -0.399 4.399 5 C -0.109 4.109 6 C -0.083 4.083 7 C 0.065 3.935 8 O -0.313 6.313 9 C 0.138 3.862 10 C -0.206 4.206 11 C -0.084 4.084 12 C -0.161 4.161 13 C -0.075 4.075 14 O -0.540 6.540 15 Si 0.948 3.052 16 H -0.251 1.251 17 H -0.254 1.254 18 H -0.253 1.253 19 C -0.049 4.049 20 C -0.153 4.153 21 C -0.394 4.394 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.130 0.870 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.376 0.624 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.081 0.919 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.850 2.862 -0.557 3.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.166 2.834 3 C -0.550 4.550 4 C -0.485 4.485 5 C -0.147 4.147 6 C -0.101 4.101 7 C -0.009 4.009 8 O -0.226 6.226 9 C 0.093 3.907 10 C -0.225 4.225 11 C -0.102 4.102 12 C -0.162 4.162 13 C -0.185 4.185 14 O -0.345 6.345 15 Si 0.772 3.228 16 H -0.175 1.175 17 H -0.178 1.178 18 H -0.177 1.177 19 C -0.067 4.067 20 C -0.171 4.171 21 C -0.479 4.479 22 H 0.090 0.910 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.148 0.852 36 H 0.139 0.861 37 H 0.134 0.866 38 H 0.223 0.777 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.100 0.900 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.172 2.964 -0.661 3.041 hybrid contribution -0.426 0.188 -0.197 0.505 sum -0.597 3.151 -0.858 3.320 Atomic orbital electron populations 1.26017 1.19873 1.04625 1.04554 0.80490 0.67643 0.67347 0.67873 1.26013 1.06598 1.17900 1.04530 1.26512 1.05248 1.06611 1.10135 1.21709 0.99237 0.99557 0.94172 1.21672 0.98651 0.95109 0.94683 1.23016 0.99916 0.80973 0.97042 1.86097 1.59608 1.23827 1.53094 1.19072 0.89920 0.90114 0.91620 1.21183 1.01837 1.01345 0.98092 1.20834 0.97304 0.93137 0.98949 1.20178 1.02073 0.95338 0.98592 1.24881 0.97230 0.91464 1.04965 1.86510 1.54118 1.31940 1.61901 0.85713 0.79992 0.79249 0.77890 1.17497 1.17833 1.17707 1.20837 0.93455 0.98935 0.93512 1.20534 1.02516 0.91507 1.02569 1.26816 1.06681 1.03862 1.10586 0.91028 0.91162 0.91031 0.91064 0.91154 0.91081 0.90503 0.90348 0.91269 0.92040 0.89768 0.91862 0.91844 0.85220 0.86084 0.86570 0.77715 0.84786 0.84886 0.89982 0.89989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.83 8.65 101.05 0.87 1.70 16 2 Si 0.97 -2.88 13.36 -169.99 -2.27 -5.15 16 3 C -0.44 0.88 8.65 101.05 0.87 1.75 16 4 C -0.40 0.53 5.85 38.30 0.22 0.76 16 5 C -0.11 0.03 5.21 -25.30 -0.13 -0.10 16 6 C -0.08 0.06 2.40 -88.76 -0.21 -0.15 16 7 C 0.07 0.00 4.11 37.16 0.15 0.15 16 8 O -0.31 -0.72 9.92 -19.43 -0.19 -0.91 16 9 C 0.14 0.32 6.69 -39.22 -0.26 0.06 16 10 C -0.21 -0.28 9.04 -39.43 -0.36 -0.64 16 11 C -0.08 -0.09 8.66 -39.61 -0.34 -0.43 16 12 C -0.16 -0.16 5.35 -104.60 -0.56 -0.72 16 13 C -0.07 0.00 2.80 36.00 0.10 0.10 16 14 O -0.54 -0.37 12.83 -35.23 -0.45 -0.82 16 15 Si 0.95 -0.23 25.13 -169.99 -4.27 -4.50 16 16 H -0.25 -0.10 7.11 56.52 0.40 0.30 16 17 H -0.25 -0.30 7.11 56.52 0.40 0.10 16 18 H -0.25 0.03 7.04 56.52 0.40 0.43 16 19 C -0.05 -0.06 9.68 -39.60 -0.38 -0.44 16 20 C -0.15 -0.28 9.99 -39.43 -0.39 -0.67 16 21 C -0.39 0.87 5.29 38.72 0.20 1.08 16 22 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 23 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 24 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 25 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 26 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 27 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 28 H 0.08 -0.09 8.04 -51.93 -0.42 -0.50 16 29 H 0.08 -0.11 8.04 -51.93 -0.42 -0.52 16 30 H 0.07 0.06 8.12 -51.93 -0.42 -0.36 16 31 H 0.06 -0.02 8.04 -51.93 -0.42 -0.44 16 32 H 0.08 -0.04 8.13 -51.93 -0.42 -0.47 16 33 H 0.06 -0.04 7.60 -51.93 -0.39 -0.44 16 34 H 0.06 -0.04 7.65 -51.93 -0.40 -0.44 16 35 H 0.13 -0.04 6.30 -52.49 -0.33 -0.37 16 36 H 0.12 -0.04 4.86 -52.48 -0.25 -0.29 16 37 H 0.12 -0.09 7.96 -51.93 -0.41 -0.51 16 38 H 0.38 -0.90 8.70 45.56 0.40 -0.50 16 39 H 0.13 0.01 8.06 -52.49 -0.42 -0.42 16 40 H 0.13 0.11 8.06 -52.49 -0.42 -0.31 16 41 H 0.08 -0.20 8.03 -51.93 -0.42 -0.62 16 42 H 0.08 -0.21 8.06 -51.93 -0.42 -0.62 16 LS Contribution 338.28 15.07 5.10 5.10 Total: 0.00 -4.32 338.28 -8.76 -13.08 By element: Atomic # 1 Polarization: -2.78 SS G_CDS: -6.45 Total: -9.24 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -0.21 Total: 2.44 kcal Atomic # 8 Polarization: -1.09 SS G_CDS: -0.64 Total: -1.73 kcal Atomic # 14 Polarization: -3.11 SS G_CDS: -6.54 Total: -9.65 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -4.32 -8.76 -13.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_26799_18051908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.290 kcal (2) G-P(sol) polarization free energy of solvation -4.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds