Wall clock time and date at job start Sat Mar 6 2021 01:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86307 * 1 3 3 C 1.86302 * 111.23922 * 2 1 4 4 C 1.89335 * 111.45807 * 125.06219 * 2 1 3 5 5 C 1.55152 * 101.34207 * 120.85665 * 4 2 1 6 6 C 1.53563 * 111.29422 * 331.41029 * 5 4 2 7 7 C 1.53003 * 109.47315 * 169.06364 * 6 5 4 8 8 O 1.42895 * 109.47110 * 66.45593 * 7 6 5 9 9 C 1.35903 * 117.00049 * 179.97438 * 8 7 6 10 10 C 1.38726 * 120.05472 * 359.73125 * 9 8 7 11 11 C 1.38146 * 119.94298 * 180.27535 * 10 9 8 12 12 C 1.38261 * 120.05809 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.94527 * 179.97438 * 12 11 10 14 14 O 1.42894 * 109.47056 * 245.01989 * 13 12 11 15 15 Si 1.86297 * 109.47141 * 5.02305 * 13 12 11 16 16 H 1.48496 * 109.47344 * 60.00027 * 15 13 12 17 17 H 1.48508 * 109.47098 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46752 * 299.99623 * 15 13 12 19 19 C 1.38270 * 120.11090 * 359.97438 * 12 11 10 20 20 C 1.38143 * 120.05378 * 0.02562 * 19 12 11 21 21 C 1.55923 * 109.50782 * 49.04068 * 6 5 4 22 22 H 1.08994 * 109.47076 * 294.93826 * 1 2 3 23 23 H 1.08999 * 109.46665 * 54.93672 * 1 2 3 24 24 H 1.09002 * 109.46771 * 174.93289 * 1 2 3 25 25 H 1.08998 * 109.47431 * 185.06713 * 3 2 1 26 26 H 1.08999 * 109.47061 * 305.06513 * 3 2 1 27 27 H 1.08999 * 109.47161 * 65.06275 * 3 2 1 28 28 H 1.08992 * 111.04553 * 2.84054 * 4 2 1 29 29 H 1.08998 * 111.08207 * 238.88373 * 4 2 1 30 30 H 1.09002 * 109.11909 * 210.92838 * 5 4 2 31 31 H 1.08998 * 109.12501 * 91.90064 * 5 4 2 32 32 H 1.09001 * 109.47500 * 289.06571 * 6 5 4 33 33 H 1.09000 * 109.47280 * 306.45406 * 7 6 5 34 34 H 1.08999 * 109.46797 * 186.45581 * 7 6 5 35 35 H 1.07998 * 120.02970 * 0.24234 * 10 9 8 36 36 H 1.08005 * 119.96788 * 179.97438 * 11 10 9 37 37 H 1.09004 * 109.46769 * 125.01919 * 13 12 11 38 38 H 0.96698 * 114.00399 * 59.99917 * 14 13 12 39 39 H 1.07993 * 119.97145 * 179.97438 * 19 12 11 40 40 H 1.08000 * 120.02832 * 179.97438 * 20 19 12 41 41 H 1.09000 * 111.42660 * 76.90399 * 21 6 5 42 42 H 1.08998 * 111.42875 * 201.84971 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.5380 1.7365 0.0000 4 6 2.5557 -1.0123 1.4423 5 6 3.3935 -2.0804 0.6910 6 6 2.8149 -2.3636 -0.7030 7 6 3.8088 -3.2048 -1.5065 8 8 3.9300 -4.4976 -0.9101 9 6 4.7800 -5.3748 -1.5060 10 6 5.4786 -5.0007 -2.6447 11 6 6.3376 -5.8961 -3.2519 12 6 6.5019 -7.1640 -2.7254 13 6 7.4392 -8.1389 -3.3901 14 8 6.6924 -9.2448 -3.9012 15 14 8.3281 -7.2898 -4.7900 16 1 9.1042 -6.1406 -4.2589 17 1 9.2513 -8.2507 -5.4455 18 1 7.3367 -6.8015 -5.7819 19 6 5.8076 -7.5389 -1.5900 20 6 4.9473 -6.6472 -0.9791 21 6 2.5569 -1.0159 -1.4434 22 1 -0.3633 0.4333 0.9318 23 1 -0.3632 0.5904 -0.8412 24 1 -0.3633 -1.0237 -0.0908 25 1 3.6237 1.7044 -0.0908 26 1 2.1193 2.2890 -0.8411 27 1 2.2657 2.2321 0.9318 28 1 1.7533 -1.4763 2.0158 29 1 3.1883 -0.3988 2.0838 30 1 3.3973 -3.0036 1.2704 31 1 4.4177 -1.7223 0.5866 32 1 1.8758 -2.9080 -0.6030 33 1 4.7817 -2.7133 -1.5094 34 1 3.4514 -3.3093 -2.5309 35 1 5.3506 -4.0105 -3.0564 36 1 6.8814 -5.6055 -4.1386 37 1 8.1669 -8.4973 -2.6620 38 1 6.0245 -8.9994 -4.5560 39 1 5.9373 -8.5299 -1.1809 40 1 4.4049 -6.9406 -0.0925 41 1 3.4839 -0.5864 -1.8232 42 1 1.8203 -1.1329 -2.2383 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_26799_18051908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:14:43 Heat of formation + Delta-G solvation = -91.759661 kcal Electronic energy + Delta-G solvation = -19505.860560 eV Core-core repulsion = 16574.209700 eV Total energy + Delta-G solvation = -2931.650861 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.29577 -39.35772 -37.43255 -36.46824 -32.31576 -31.68989 -30.55691 -29.11871 -28.38257 -27.49422 -26.01115 -24.46130 -23.41810 -22.26163 -20.75170 -19.30522 -18.31332 -17.18629 -16.99342 -16.59067 -16.10078 -15.81366 -15.60520 -15.27474 -14.99377 -14.47074 -14.42026 -13.91064 -13.84928 -13.78443 -13.66314 -13.56070 -13.40398 -13.21956 -13.15264 -12.62794 -12.33225 -12.22448 -12.20194 -12.13563 -12.00839 -11.66233 -11.48969 -11.36739 -10.77157 -10.46461 -10.38179 -10.28446 -10.06033 -9.20157 0.26459 0.29654 1.18790 1.44347 1.51741 1.68862 1.90803 2.00386 2.03059 2.23411 2.64166 2.64758 3.56884 3.64985 3.77699 3.83496 3.89885 4.01264 4.07755 4.24877 4.32711 4.44030 4.51963 4.57263 4.60725 4.68468 4.71675 4.76362 4.81138 4.83615 4.85127 4.85655 4.95226 5.10850 5.16833 5.20878 5.26055 5.34010 5.47441 5.47941 5.51887 5.59622 5.64278 5.74057 6.39965 6.71519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.457 4.457 2 Si 1.042 2.958 3 C -0.455 4.455 4 C -0.417 4.417 5 C -0.110 4.110 6 C -0.083 4.083 7 C 0.060 3.940 8 O -0.328 6.328 9 C 0.122 3.878 10 C -0.211 4.211 11 C -0.091 4.091 12 C -0.164 4.164 13 C -0.074 4.074 14 O -0.554 6.554 15 Si 0.981 3.019 16 H -0.259 1.259 17 H -0.276 1.276 18 H -0.252 1.252 19 C -0.055 4.055 20 C -0.165 4.165 21 C -0.400 4.400 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.145 0.855 36 H 0.135 0.865 37 H 0.123 0.877 38 H 0.388 0.612 39 H 0.143 0.857 40 H 0.136 0.864 41 H 0.089 0.911 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.868 3.509 -1.283 3.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.564 4.564 2 Si 1.235 2.765 3 C -0.562 4.562 4 C -0.501 4.501 5 C -0.148 4.148 6 C -0.102 4.102 7 C -0.015 4.015 8 O -0.242 6.242 9 C 0.077 3.923 10 C -0.229 4.229 11 C -0.109 4.109 12 C -0.164 4.164 13 C -0.185 4.185 14 O -0.361 6.361 15 Si 0.806 3.194 16 H -0.183 1.183 17 H -0.201 1.201 18 H -0.176 1.176 19 C -0.073 4.073 20 C -0.184 4.184 21 C -0.484 4.484 22 H 0.088 0.912 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.162 0.838 36 H 0.152 0.848 37 H 0.141 0.859 38 H 0.237 0.763 39 H 0.161 0.839 40 H 0.154 0.846 41 H 0.107 0.893 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.203 3.608 -1.378 3.867 hybrid contribution -0.419 -0.034 0.050 0.423 sum -0.622 3.574 -1.327 3.863 Atomic orbital electron populations 1.26195 1.21136 1.04487 1.04627 0.79391 0.65862 0.65641 0.65581 1.26161 1.06751 1.18709 1.04601 1.26738 1.05210 1.06903 1.11224 1.21712 0.99589 0.99003 0.94483 1.21691 0.98176 0.95806 0.94497 1.23198 1.00518 0.80279 0.97479 1.86083 1.59771 1.24654 1.53723 1.19267 0.90442 0.90392 0.92223 1.21392 1.01590 1.02138 0.97803 1.21046 0.97334 0.93143 0.99390 1.20339 1.02017 0.95598 0.98467 1.24946 0.97035 0.91199 1.05272 1.86479 1.54666 1.32467 1.62461 0.85240 0.78989 0.78006 0.77146 1.18292 1.20105 1.17559 1.20989 0.93367 0.99256 0.93693 1.20701 1.02949 0.91793 1.02944 1.26931 1.07376 1.02954 1.11156 0.91172 0.90853 0.91336 0.91068 0.90872 0.91211 0.90950 0.90378 0.93190 0.92053 0.90228 0.91247 0.91085 0.83779 0.84796 0.85947 0.76308 0.83937 0.84644 0.89266 0.89251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.88 8.65 113.37 0.98 2.86 16 2 Si 1.04 -6.67 13.36 68.60 0.92 -5.76 16 3 C -0.45 2.14 8.65 113.37 0.98 3.12 16 4 C -0.42 0.88 5.85 72.72 0.43 1.30 16 5 C -0.11 -0.03 5.21 31.52 0.16 0.13 16 6 C -0.08 0.10 2.40 -9.59 -0.02 0.08 16 7 C 0.06 0.02 4.11 71.98 0.30 0.32 16 8 O -0.33 -1.85 9.92 -92.45 -0.92 -2.76 16 9 C 0.12 0.66 6.69 22.51 0.15 0.81 16 10 C -0.21 -0.59 9.04 22.36 0.20 -0.38 16 11 C -0.09 -0.17 8.66 22.25 0.19 0.02 16 12 C -0.16 -0.32 5.35 -19.85 -0.11 -0.43 16 13 C -0.07 0.02 2.80 71.23 0.20 0.22 16 14 O -0.55 -0.61 12.83 -148.98 -1.91 -2.52 16 15 Si 0.98 -0.81 25.13 68.60 1.72 0.91 16 16 H -0.26 -0.09 7.11 99.48 0.71 0.62 16 17 H -0.28 -0.74 7.11 99.48 0.71 -0.03 16 18 H -0.25 0.29 7.04 99.48 0.70 1.00 16 19 C -0.06 -0.16 9.68 22.25 0.22 0.06 16 20 C -0.17 -0.77 9.99 22.37 0.22 -0.55 16 21 C -0.40 2.06 5.29 72.99 0.39 2.45 16 22 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 23 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 24 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 25 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 26 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 27 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 28 H 0.07 -0.09 8.04 -2.39 -0.02 -0.11 16 29 H 0.08 -0.17 8.04 -2.39 -0.02 -0.19 16 30 H 0.05 0.19 8.12 -2.39 -0.02 0.17 16 31 H 0.06 0.00 8.04 -2.39 -0.02 -0.02 16 32 H 0.08 -0.03 8.13 -2.39 -0.02 -0.05 16 33 H 0.07 -0.09 7.60 -2.39 -0.02 -0.10 16 34 H 0.07 -0.10 7.65 -2.39 -0.02 -0.12 16 35 H 0.14 -0.15 6.30 -2.91 -0.02 -0.17 16 36 H 0.13 -0.19 4.86 -2.91 -0.01 -0.20 16 37 H 0.12 -0.23 7.96 -2.39 -0.02 -0.25 16 38 H 0.39 -1.98 8.70 -74.06 -0.64 -2.62 16 39 H 0.14 0.06 8.06 -2.91 -0.02 0.04 16 40 H 0.14 0.42 8.06 -2.91 -0.02 0.39 16 41 H 0.09 -0.55 8.03 -2.39 -0.02 -0.57 16 42 H 0.09 -0.55 8.06 -2.39 -0.02 -0.57 16 Total: 0.00 -10.00 338.28 5.19 -4.81 By element: Atomic # 1 Polarization: -5.77 SS G_CDS: 1.09 Total: -4.68 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 4.29 Total: 9.99 kcal Atomic # 8 Polarization: -2.45 SS G_CDS: -2.83 Total: -5.28 kcal Atomic # 14 Polarization: -7.48 SS G_CDS: 2.64 Total: -4.84 kcal Total: -10.00 5.19 -4.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_26799_18051908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.948 kcal (2) G-P(sol) polarization free energy of solvation -9.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds