Wall clock time and date at job start Fri Mar 5 2021 23:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89654 * 111.45802 * 125.06597 * 2 1 3 5 5 C 1.55920 * 99.33841 * 138.35691 * 4 2 1 6 6 C 1.53571 * 109.50277 * 319.37972 * 5 4 2 7 7 C 1.53006 * 109.12221 * 169.52061 * 6 5 4 8 8 O 1.42896 * 109.47051 * 66.45352 * 7 6 5 9 9 C 1.35896 * 116.99913 * 180.02562 * 8 7 6 10 10 C 1.38717 * 120.05616 * 359.97438 * 9 8 7 11 11 C 1.38168 * 119.94390 * 179.97438 * 10 9 8 12 12 C 1.38240 * 120.05642 * 0.02562 * 11 10 9 13 13 C 1.38292 * 120.11371 * 0.02562 * 12 11 10 14 14 C 1.38122 * 120.05162 * 359.68762 * 13 12 11 15 15 C 1.50706 * 120.02770 * 180.31914 * 14 13 12 16 16 O 1.42899 * 109.47178 * 105.27276 * 15 14 13 17 17 Si 1.86302 * 109.46897 * 345.27246 * 15 14 13 18 18 H 1.48499 * 109.46984 * 60.00466 * 17 15 14 19 19 H 1.48496 * 109.46932 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47247 * 300.00235 * 17 15 14 21 21 C 1.55354 * 111.29225 * 49.07554 * 6 5 4 22 22 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 23 23 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 24 24 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 26 26 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 28 28 H 1.08998 * 111.42418 * 255.88370 * 4 2 1 29 29 H 1.09003 * 111.42412 * 20.82559 * 4 2 1 30 30 H 1.08995 * 109.47225 * 79.40017 * 5 4 2 31 31 H 1.09000 * 109.47371 * 199.35610 * 5 4 2 32 32 H 1.09001 * 109.12873 * 288.55222 * 6 5 4 33 33 H 1.09007 * 109.46549 * 186.45308 * 7 6 5 34 34 H 1.08996 * 109.46988 * 306.45158 * 7 6 5 35 35 H 1.08005 * 120.02524 * 0.02707 * 10 9 8 36 36 H 1.08000 * 119.96984 * 179.97438 * 11 10 9 37 37 H 1.07996 * 119.94375 * 180.02562 * 12 11 10 38 38 H 1.07993 * 119.97359 * 179.97438 * 13 12 11 39 39 H 1.09003 * 109.46812 * 225.27230 * 15 14 13 40 40 H 0.96704 * 114.00316 * 300.00356 * 16 15 14 41 41 H 1.08995 * 111.07416 * 213.38000 * 21 6 5 42 42 H 1.08996 * 111.09205 * 89.35608 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5568 -1.0141 1.4447 5 6 3.7194 -1.7445 0.7058 6 6 3.2462 -2.1820 -0.6881 7 6 4.4523 -2.6583 -1.5002 8 8 4.9787 -3.8514 -0.9161 9 6 6.0610 -4.4086 -1.5203 10 6 6.6048 -3.8194 -2.6523 11 6 7.7055 -4.3876 -3.2644 12 6 8.2645 -5.5425 -2.7499 13 6 7.7236 -6.1325 -1.6222 14 6 6.6270 -5.5651 -1.0031 15 6 6.0424 -6.2045 0.2300 16 8 6.4017 -5.4369 1.3805 17 14 6.7072 -7.9359 0.4063 18 1 8.1864 -7.8882 0.5274 19 1 6.1316 -8.5657 1.6217 20 1 6.3338 -8.7336 -0.7893 21 6 2.5556 -1.0124 -1.4423 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 2.1907 2.2612 0.8899 26 1 3.6274 1.7027 -0.0005 27 1 2.1908 2.2612 -0.8900 28 1 2.9328 -0.3695 2.2392 29 1 1.8198 -1.7216 1.8247 30 1 4.5681 -1.0679 0.6057 31 1 4.0203 -2.6213 1.2792 32 1 2.5407 -3.0062 -0.5835 33 1 4.1426 -2.8616 -2.5254 34 1 5.2196 -1.8841 -1.4992 35 1 6.1686 -2.9168 -3.0543 36 1 8.1290 -3.9295 -4.1459 37 1 9.1251 -5.9849 -3.2296 38 1 8.1619 -7.0349 -1.2224 39 1 4.9566 -6.2394 0.1411 40 1 7.3555 -5.3632 1.5221 41 1 1.7543 -1.3787 -2.0838 42 1 3.2797 -0.4331 -2.0150 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_7_26800_18051908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:03:44 Heat of formation + Delta-G solvation = -99.338964 kcal Electronic energy + Delta-G solvation = -20161.047732 eV Core-core repulsion = 17229.068208 eV Total energy + Delta-G solvation = -2931.979524 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.141 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.29719 -38.94351 -37.39666 -36.56013 -32.64906 -31.14149 -30.38383 -29.25114 -28.52742 -27.28844 -26.56733 -24.27417 -23.02692 -22.42051 -20.68445 -19.25392 -18.02115 -16.99232 -16.92521 -16.75962 -15.95056 -15.81186 -15.60154 -15.10121 -15.00817 -14.52425 -14.43801 -13.99654 -13.93693 -13.79779 -13.62788 -13.50284 -13.38379 -13.28383 -12.96489 -12.70336 -12.54588 -12.24776 -12.13524 -12.07386 -11.82005 -11.59818 -11.47491 -11.35734 -10.90510 -10.58445 -10.30229 -10.25222 -9.93526 -9.09309 0.26748 0.49299 1.22483 1.45492 1.56383 1.57541 1.85167 1.87109 1.96461 2.29062 2.54949 2.74830 3.59697 3.73421 3.82630 3.89417 3.96883 4.08101 4.11956 4.25380 4.38282 4.43637 4.50920 4.57752 4.61982 4.65596 4.67084 4.69438 4.71176 4.72049 4.74240 4.75801 5.02081 5.10338 5.13988 5.34012 5.36996 5.39856 5.40457 5.48306 5.49739 5.53167 5.54187 5.80645 6.51726 6.69580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.442 4.442 2 Si 0.966 3.034 3 C -0.441 4.441 4 C -0.396 4.396 5 C -0.112 4.112 6 C -0.078 4.078 7 C 0.063 3.937 8 O -0.301 6.301 9 C 0.160 3.840 10 C -0.212 4.212 11 C -0.073 4.073 12 C -0.155 4.155 13 C -0.090 4.090 14 C -0.157 4.157 15 C -0.067 4.067 16 O -0.533 6.533 17 Si 0.948 3.052 18 H -0.253 1.253 19 H -0.253 1.253 20 H -0.250 1.250 21 C -0.395 4.395 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.115 0.885 40 H 0.372 0.628 41 H 0.081 0.919 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.236 1.497 -1.680 2.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.550 4.550 2 Si 1.163 2.837 3 C -0.550 4.550 4 C -0.483 4.483 5 C -0.149 4.149 6 C -0.097 4.097 7 C -0.012 4.012 8 O -0.213 6.213 9 C 0.113 3.887 10 C -0.231 4.231 11 C -0.091 4.091 12 C -0.173 4.173 13 C -0.108 4.108 14 C -0.158 4.158 15 C -0.178 4.178 16 O -0.338 6.338 17 Si 0.771 3.229 18 H -0.177 1.177 19 H -0.177 1.177 20 H -0.173 1.173 21 C -0.480 4.480 22 H 0.088 0.912 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.133 0.867 40 H 0.218 0.782 41 H 0.100 0.900 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.239 0.682 -1.376 1.554 hybrid contribution 0.641 0.500 -0.569 0.992 sum 0.401 1.182 -1.945 2.311 Atomic orbital electron populations 1.26014 1.19964 1.04609 1.04450 0.80527 0.67408 0.67581 0.68138 1.26008 1.06604 1.17864 1.04503 1.26666 1.03845 1.07985 1.09769 1.21907 0.97811 1.01013 0.94185 1.21504 0.95289 0.98365 0.94511 1.23084 0.95966 0.85081 0.97086 1.86160 1.41850 1.40626 1.52707 1.18755 0.86979 0.92038 0.90907 1.21338 1.00545 1.02996 0.98211 1.21021 0.94430 0.94932 0.98716 1.21010 1.01609 0.97194 0.97513 1.20981 0.94690 0.99313 0.95769 1.19649 0.98924 0.96782 1.00408 1.24798 1.04700 1.04589 0.83701 1.86560 1.28205 1.75025 1.43961 0.85760 0.80069 0.75552 0.81496 1.17673 1.17730 1.17341 1.26673 1.05291 1.05330 1.10749 0.91246 0.91088 0.91022 0.91077 0.91097 0.91177 0.90421 0.90375 0.91995 0.90556 0.89983 0.92051 0.92001 0.85300 0.85551 0.85526 0.85440 0.86677 0.78214 0.89986 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.67 8.65 101.05 0.87 1.55 16 2 Si 0.97 -2.41 13.35 -169.99 -2.27 -4.68 16 3 C -0.44 0.70 8.65 101.05 0.87 1.57 16 4 C -0.40 0.27 5.95 38.72 0.23 0.50 16 5 C -0.11 -0.05 5.06 -24.87 -0.13 -0.17 16 6 C -0.08 0.01 2.58 -89.07 -0.23 -0.22 16 7 C 0.06 0.03 3.98 37.16 0.15 0.18 16 8 O -0.30 -0.86 9.24 -19.41 -0.18 -1.04 16 9 C 0.16 0.43 6.66 -39.21 -0.26 0.17 16 10 C -0.21 -0.30 9.04 -39.43 -0.36 -0.66 16 11 C -0.07 -0.05 10.04 -39.61 -0.40 -0.45 16 12 C -0.16 -0.10 10.04 -39.56 -0.40 -0.50 16 13 C -0.09 -0.10 8.66 -39.60 -0.34 -0.44 16 14 C -0.16 -0.33 5.27 -104.47 -0.55 -0.88 16 15 C -0.07 -0.10 2.38 36.01 0.09 -0.01 16 16 O -0.53 -1.11 12.88 -35.23 -0.45 -1.57 16 17 Si 0.95 0.39 25.48 -169.99 -4.33 -3.94 16 18 H -0.25 0.00 6.74 56.52 0.38 0.38 16 19 H -0.25 -0.45 7.11 56.52 0.40 -0.05 16 20 H -0.25 -0.26 7.11 56.52 0.40 0.14 16 21 C -0.40 0.68 5.28 38.41 0.20 0.88 16 22 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 23 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 24 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 25 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 26 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 27 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 28 H 0.08 -0.05 8.06 -51.93 -0.42 -0.47 16 29 H 0.08 -0.03 8.06 -51.93 -0.42 -0.45 16 30 H 0.06 0.01 8.05 -51.93 -0.42 -0.41 16 31 H 0.08 0.17 8.11 -51.93 -0.42 -0.25 16 32 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 33 H 0.06 -0.01 7.65 -51.92 -0.40 -0.41 16 34 H 0.06 -0.01 7.59 -51.93 -0.39 -0.40 16 35 H 0.13 -0.02 6.30 -52.48 -0.33 -0.35 16 36 H 0.13 -0.17 8.06 -52.49 -0.42 -0.60 16 37 H 0.13 -0.16 8.06 -52.49 -0.42 -0.58 16 38 H 0.13 -0.05 4.89 -52.49 -0.26 -0.30 16 39 H 0.12 0.19 7.83 -51.93 -0.41 -0.21 16 40 H 0.37 -0.47 8.70 45.56 0.40 -0.07 16 41 H 0.08 -0.16 8.04 -51.93 -0.42 -0.58 16 42 H 0.08 -0.17 7.85 -51.93 -0.41 -0.58 16 LS Contribution 337.30 15.07 5.08 5.08 Total: 0.00 -4.46 337.30 -8.85 -13.31 By element: Atomic # 1 Polarization: -2.22 SS G_CDS: -6.46 Total: -8.68 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -0.25 Total: 1.51 kcal Atomic # 8 Polarization: -1.97 SS G_CDS: -0.63 Total: -2.60 kcal Atomic # 14 Polarization: -2.02 SS G_CDS: -6.60 Total: -8.62 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -4.46 -8.85 -13.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_26800_18051908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.030 kcal (2) G-P(sol) polarization free energy of solvation -4.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds