Wall clock time and date at job start Fri Mar 5 2021 23:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89654 * 111.45802 * 125.06597 * 2 1 3 5 5 C 1.55920 * 99.33841 * 138.35691 * 4 2 1 6 6 C 1.53571 * 109.50277 * 319.37972 * 5 4 2 7 7 C 1.53006 * 109.12221 * 169.52061 * 6 5 4 8 8 O 1.42896 * 109.47051 * 66.45352 * 7 6 5 9 9 C 1.35896 * 116.99913 * 180.02562 * 8 7 6 10 10 C 1.38717 * 120.05616 * 359.97438 * 9 8 7 11 11 C 1.38168 * 119.94390 * 179.97438 * 10 9 8 12 12 C 1.38240 * 120.05642 * 0.02562 * 11 10 9 13 13 C 1.38292 * 120.11371 * 0.02562 * 12 11 10 14 14 C 1.38122 * 120.05162 * 359.68762 * 13 12 11 15 15 C 1.50706 * 120.02770 * 180.31914 * 14 13 12 16 16 O 1.42899 * 109.47178 * 105.27276 * 15 14 13 17 17 Si 1.86302 * 109.46897 * 345.27246 * 15 14 13 18 18 H 1.48499 * 109.46984 * 60.00466 * 17 15 14 19 19 H 1.48496 * 109.46932 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47247 * 300.00235 * 17 15 14 21 21 C 1.55354 * 111.29225 * 49.07554 * 6 5 4 22 22 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 23 23 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 24 24 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 26 26 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 28 28 H 1.08998 * 111.42418 * 255.88370 * 4 2 1 29 29 H 1.09003 * 111.42412 * 20.82559 * 4 2 1 30 30 H 1.08995 * 109.47225 * 79.40017 * 5 4 2 31 31 H 1.09000 * 109.47371 * 199.35610 * 5 4 2 32 32 H 1.09001 * 109.12873 * 288.55222 * 6 5 4 33 33 H 1.09007 * 109.46549 * 186.45308 * 7 6 5 34 34 H 1.08996 * 109.46988 * 306.45158 * 7 6 5 35 35 H 1.08005 * 120.02524 * 0.02707 * 10 9 8 36 36 H 1.08000 * 119.96984 * 179.97438 * 11 10 9 37 37 H 1.07996 * 119.94375 * 180.02562 * 12 11 10 38 38 H 1.07993 * 119.97359 * 179.97438 * 13 12 11 39 39 H 1.09003 * 109.46812 * 225.27230 * 15 14 13 40 40 H 0.96704 * 114.00316 * 300.00356 * 16 15 14 41 41 H 1.08995 * 111.07416 * 213.38000 * 21 6 5 42 42 H 1.08996 * 111.09205 * 89.35608 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5568 -1.0141 1.4447 5 6 3.7194 -1.7445 0.7058 6 6 3.2462 -2.1820 -0.6881 7 6 4.4523 -2.6583 -1.5002 8 8 4.9787 -3.8514 -0.9161 9 6 6.0610 -4.4086 -1.5203 10 6 6.6048 -3.8194 -2.6523 11 6 7.7055 -4.3876 -3.2644 12 6 8.2645 -5.5425 -2.7499 13 6 7.7236 -6.1325 -1.6222 14 6 6.6270 -5.5651 -1.0031 15 6 6.0424 -6.2045 0.2300 16 8 6.4017 -5.4369 1.3805 17 14 6.7072 -7.9359 0.4063 18 1 8.1864 -7.8882 0.5274 19 1 6.1316 -8.5657 1.6217 20 1 6.3338 -8.7336 -0.7893 21 6 2.5556 -1.0124 -1.4423 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 2.1907 2.2612 0.8899 26 1 3.6274 1.7027 -0.0005 27 1 2.1908 2.2612 -0.8900 28 1 2.9328 -0.3695 2.2392 29 1 1.8198 -1.7216 1.8247 30 1 4.5681 -1.0679 0.6057 31 1 4.0203 -2.6213 1.2792 32 1 2.5407 -3.0062 -0.5835 33 1 4.1426 -2.8616 -2.5254 34 1 5.2196 -1.8841 -1.4992 35 1 6.1686 -2.9168 -3.0543 36 1 8.1290 -3.9295 -4.1459 37 1 9.1251 -5.9849 -3.2296 38 1 8.1619 -7.0349 -1.2224 39 1 4.9566 -6.2394 0.1411 40 1 7.3555 -5.3632 1.5221 41 1 1.7543 -1.3787 -2.0838 42 1 3.2797 -0.4331 -2.0150 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_26800_18051908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:03:43 Heat of formation + Delta-G solvation = -89.904578 kcal Electronic energy + Delta-G solvation = -20160.638626 eV Core-core repulsion = 17229.068208 eV Total energy + Delta-G solvation = -2931.570418 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.141 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.36382 -39.00264 -37.50224 -36.58044 -32.71112 -31.17412 -30.38536 -29.11282 -28.37990 -27.25670 -26.64309 -24.26928 -23.07086 -22.48177 -20.69170 -19.32673 -18.11212 -17.05438 -16.99254 -16.81627 -15.97843 -15.88068 -15.63804 -15.12532 -15.05743 -14.58318 -14.42581 -13.88996 -13.80676 -13.75775 -13.60161 -13.41518 -13.31257 -13.16311 -13.00118 -12.65781 -12.56591 -12.22923 -12.20031 -12.12902 -11.86212 -11.64431 -11.51325 -11.37458 -10.76988 -10.47032 -10.34587 -10.24779 -9.99251 -9.17425 0.21065 0.42193 1.15746 1.41216 1.51505 1.69237 1.88853 2.00744 2.04576 2.26724 2.64860 2.69118 3.55086 3.70995 3.80124 3.87825 3.96099 4.09228 4.12441 4.23264 4.36062 4.41913 4.51623 4.57036 4.58929 4.65727 4.69273 4.76404 4.81641 4.83904 4.85156 4.86119 4.97749 5.16256 5.16968 5.29521 5.33989 5.36107 5.48169 5.49903 5.52438 5.59922 5.64459 5.79190 6.45004 6.72700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.455 4.455 2 Si 1.041 2.959 3 C -0.453 4.453 4 C -0.417 4.417 5 C -0.111 4.111 6 C -0.078 4.078 7 C 0.059 3.941 8 O -0.319 6.319 9 C 0.136 3.864 10 C -0.220 4.220 11 C -0.078 4.078 12 C -0.159 4.159 13 C -0.097 4.097 14 C -0.171 4.171 15 C -0.074 4.074 16 O -0.552 6.552 17 Si 0.989 3.011 18 H -0.240 1.240 19 H -0.275 1.275 20 H -0.257 1.257 21 C -0.401 4.401 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.141 0.859 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.103 0.897 40 H 0.384 0.616 41 H 0.088 0.912 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 1.997 -2.744 3.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.234 2.766 3 C -0.561 4.561 4 C -0.500 4.500 5 C -0.149 4.149 6 C -0.096 4.096 7 C -0.016 4.016 8 O -0.233 6.233 9 C 0.090 3.910 10 C -0.238 4.238 11 C -0.096 4.096 12 C -0.177 4.177 13 C -0.115 4.115 14 C -0.172 4.172 15 C -0.183 4.183 16 O -0.358 6.358 17 Si 0.812 3.188 18 H -0.163 1.163 19 H -0.201 1.201 20 H -0.181 1.181 21 C -0.485 4.485 22 H 0.092 0.908 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.158 0.842 36 H 0.166 0.834 37 H 0.166 0.834 38 H 0.159 0.841 39 H 0.121 0.879 40 H 0.233 0.767 41 H 0.107 0.893 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.298 1.185 -2.433 2.723 hybrid contribution 0.480 0.352 -0.216 0.633 sum 0.778 1.537 -2.650 3.160 Atomic orbital electron populations 1.26170 1.20948 1.04522 1.04655 0.79415 0.65808 0.65867 0.65490 1.26142 1.06658 1.18558 1.04741 1.26924 1.03588 1.08466 1.11070 1.21881 0.98438 1.00053 0.94517 1.21511 0.95026 0.98784 0.94323 1.23233 0.96252 0.84663 0.97450 1.86142 1.42224 1.41466 1.53462 1.19045 0.87425 0.92729 0.91764 1.21556 1.00887 1.03463 0.97915 1.21338 0.94047 0.94953 0.99247 1.21343 1.02044 0.97121 0.97237 1.21195 0.94427 0.99808 0.96040 1.19827 0.99525 0.97042 1.00764 1.24950 1.04255 1.05633 0.83501 1.86517 1.29583 1.75410 1.44305 0.85174 0.80238 0.73539 0.79823 1.16345 1.20074 1.18106 1.26792 1.05615 1.04798 1.11330 0.90798 0.91139 0.91286 0.91108 0.91218 0.90692 0.90520 0.90961 0.91780 0.93224 0.90915 0.91336 0.91420 0.84165 0.83430 0.83442 0.84127 0.87909 0.76741 0.89300 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.56 8.65 113.37 0.98 2.54 16 2 Si 1.04 -5.44 13.35 68.60 0.92 -4.52 16 3 C -0.45 1.74 8.65 113.37 0.98 2.72 16 4 C -0.42 0.08 5.95 72.99 0.43 0.51 16 5 C -0.11 -0.29 5.06 31.80 0.16 -0.13 16 6 C -0.08 -0.07 2.58 -9.79 -0.03 -0.09 16 7 C 0.06 0.12 3.98 71.98 0.29 0.41 16 8 O -0.32 -2.44 9.24 -92.38 -0.85 -3.29 16 9 C 0.14 0.90 6.66 22.51 0.15 1.05 16 10 C -0.22 -0.69 9.04 22.37 0.20 -0.48 16 11 C -0.08 -0.05 10.04 22.25 0.22 0.17 16 12 C -0.16 -0.08 10.04 22.28 0.22 0.14 16 13 C -0.10 -0.21 8.66 22.26 0.19 -0.02 16 14 C -0.17 -0.90 5.27 -19.77 -0.10 -1.00 16 15 C -0.07 -0.33 2.38 71.24 0.17 -0.16 16 16 O -0.55 -3.27 12.88 -148.98 -1.92 -5.19 16 17 Si 0.99 1.25 25.48 68.60 1.75 3.00 16 18 H -0.24 0.23 6.74 99.48 0.67 0.90 16 19 H -0.28 -1.29 7.11 99.48 0.71 -0.58 16 20 H -0.26 -0.58 7.11 99.48 0.71 0.13 16 21 C -0.40 1.51 5.28 72.79 0.38 1.90 16 22 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 23 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 24 H 0.07 -0.18 7.96 -2.38 -0.02 -0.20 16 25 H 0.07 -0.25 7.96 -2.39 -0.02 -0.26 16 26 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 27 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 28 H 0.08 -0.02 8.06 -2.39 -0.02 -0.04 16 29 H 0.07 0.06 8.06 -2.39 -0.02 0.04 16 30 H 0.06 0.11 8.05 -2.39 -0.02 0.09 16 31 H 0.05 0.38 8.11 -2.39 -0.02 0.36 16 32 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.07 0.01 7.65 -2.38 -0.02 -0.01 16 34 H 0.07 0.03 7.59 -2.39 -0.02 0.01 16 35 H 0.14 -0.04 6.30 -2.91 -0.02 -0.06 16 36 H 0.15 -0.62 8.06 -2.91 -0.02 -0.65 16 37 H 0.15 -0.62 8.06 -2.91 -0.02 -0.64 16 38 H 0.14 -0.20 4.89 -2.91 -0.01 -0.21 16 39 H 0.10 0.62 7.83 -2.39 -0.02 0.60 16 40 H 0.38 -0.48 8.70 -74.05 -0.64 -1.12 16 41 H 0.09 -0.42 8.04 -2.39 -0.02 -0.44 16 42 H 0.09 -0.46 7.85 -2.39 -0.02 -0.48 16 Total: 0.00 -11.21 337.30 5.21 -6.00 By element: Atomic # 1 Polarization: -4.62 SS G_CDS: 1.06 Total: -3.56 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 4.26 Total: 7.56 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -2.77 Total: -8.48 kcal Atomic # 14 Polarization: -4.19 SS G_CDS: 2.66 Total: -1.52 kcal Total: -11.21 5.21 -6.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_26800_18051908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.904 kcal (2) G-P(sol) polarization free energy of solvation -11.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds