Wall clock time and date at job start Fri Mar 5 2021 23:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86296 * 111.24439 * 2 1 4 4 C 1.89341 * 111.45676 * 125.06771 * 2 1 3 5 5 C 1.55147 * 101.35010 * 114.13697 * 4 2 1 6 6 C 1.53575 * 111.28762 * 28.58365 * 5 4 2 7 7 C 1.53005 * 109.47100 * 190.93801 * 6 5 4 8 8 O 1.42901 * 109.47048 * 293.55179 * 7 6 5 9 9 C 1.35889 * 116.99491 * 179.97438 * 8 7 6 10 10 C 1.39800 * 119.57143 * 359.72447 * 9 8 7 11 11 C 1.36015 * 120.92992 * 179.74810 * 10 9 8 12 12 C 1.40547 * 119.73327 * 0.52138 * 11 10 9 13 13 C 1.40537 * 121.22255 * 179.76182 * 12 11 10 14 14 C 1.36102 * 119.67031 * 179.97438 * 13 12 11 15 15 C 1.39381 * 120.99741 * 0.02562 * 14 13 12 16 16 C 1.36083 * 120.98634 * 359.97438 * 15 14 13 17 17 C 1.40583 * 119.66091 * 0.02562 * 16 15 14 18 18 C 1.36613 * 119.56242 * 179.97438 * 9 8 7 19 19 C 1.50695 * 120.18874 * 359.95832 * 18 9 8 20 20 O 1.42905 * 109.47273 * 53.55093 * 19 18 9 21 21 Si 1.86299 * 109.47509 * 293.54956 * 19 18 9 22 22 H 1.48503 * 109.47012 * 65.52438 * 21 19 18 23 23 H 1.48498 * 109.47283 * 185.52471 * 21 19 18 24 24 H 1.48494 * 109.47066 * 305.52867 * 21 19 18 25 25 C 1.56056 * 109.55625 * 311.00778 * 6 5 4 26 26 H 1.09005 * 109.46737 * 59.99831 * 1 2 3 27 27 H 1.08999 * 109.47650 * 300.00473 * 1 2 3 28 28 H 1.08999 * 109.47427 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47036 * 59.99964 * 3 2 1 30 30 H 1.08995 * 109.47213 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47142 * 299.99953 * 3 2 1 32 32 H 1.08998 * 111.04545 * 232.15685 * 4 2 1 33 33 H 1.09003 * 111.04706 * 356.11561 * 4 2 1 34 34 H 1.08994 * 109.12682 * 149.07400 * 5 4 2 35 35 H 1.09003 * 109.12162 * 268.10524 * 5 4 2 36 36 H 1.08993 * 109.47060 * 70.94728 * 6 5 4 37 37 H 1.09002 * 109.46695 * 53.54952 * 7 6 5 38 38 H 1.08994 * 109.47168 * 173.54661 * 7 6 5 39 39 H 1.08001 * 119.53233 * 359.97438 * 10 9 8 40 40 H 1.08011 * 120.13403 * 180.25865 * 11 10 9 41 41 H 1.07998 * 120.16518 * 0.02562 * 13 12 11 42 42 H 1.07994 * 119.50193 * 179.97438 * 14 13 12 43 43 H 1.08001 * 119.50298 * 179.97438 * 15 14 13 44 44 H 1.08001 * 120.16848 * 180.02562 * 16 15 14 45 45 H 1.09006 * 109.47279 * 173.55214 * 19 18 9 46 46 H 0.96700 * 113.99740 * 65.32878 * 20 19 18 47 47 H 1.08999 * 111.41517 * 283.04411 * 25 6 5 48 48 H 1.09003 * 111.48862 * 158.06982 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0125 1.4423 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1417 -2.9772 -1.5067 8 8 5.3027 -3.5594 -0.9106 9 6 5.8103 -4.6705 -1.5058 10 6 5.1874 -5.1886 -2.6451 11 6 5.6749 -6.2963 -3.2659 12 6 6.8144 -6.9387 -2.7519 13 6 7.3417 -8.0880 -3.3653 14 6 8.4470 -8.6845 -2.8411 15 6 9.0665 -8.1733 -1.7019 16 6 8.5844 -7.0625 -1.0811 17 6 7.4444 -6.4186 -1.5932 18 6 6.9197 -5.2697 -0.9800 19 6 7.5762 -4.7010 0.2515 20 8 6.6032 -4.5612 1.2886 21 14 8.3036 -3.0327 -0.1467 22 1 7.2108 -2.0809 -0.4709 23 1 9.0646 -2.5319 1.0260 24 1 9.2150 -3.1556 -1.3125 25 6 2.5568 -1.0141 -1.4446 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 2.1907 2.2612 0.8900 30 1 3.6275 1.7027 0.0005 31 1 2.1908 2.2612 -0.8900 32 1 3.2796 -0.4331 2.0152 33 1 1.7542 -1.3787 2.0840 34 1 4.1053 -2.5197 1.2701 35 1 2.5406 -3.0055 0.5874 36 1 4.5675 -1.0681 -0.6041 37 1 3.3305 -3.7052 -1.5088 38 1 4.3682 -2.6827 -2.5313 39 1 4.3087 -4.7002 -3.0400 40 1 5.1858 -6.6832 -4.1478 41 1 6.8726 -8.4953 -4.2487 42 1 8.8496 -9.5678 -3.3144 43 1 9.9422 -8.6662 -1.3062 44 1 9.0752 -6.6774 -0.1994 45 1 8.3679 -5.3725 0.5841 46 1 6.2413 -5.4005 1.6042 47 1 1.8199 -1.7216 -1.8247 48 1 2.9328 -0.3696 -2.2392 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_7_26801_18051908.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:12:12 Heat of formation + Delta-G solvation = -80.516170 kcal Electronic energy + Delta-G solvation = -26391.374843 eV Core-core repulsion = 22919.995496 eV Total energy + Delta-G solvation = -3471.379347 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.82703 -39.96374 -37.82356 -36.99767 -35.98544 -33.85886 -30.90960 -30.85946 -29.97594 -29.24045 -28.51846 -27.22842 -26.54867 -24.55287 -23.89439 -23.34611 -21.80104 -20.70739 -19.27504 -18.46324 -18.30620 -17.17006 -17.04924 -16.55057 -16.01137 -15.63486 -15.58604 -15.57241 -14.89086 -14.69674 -14.58580 -14.34199 -14.17480 -13.97585 -13.93132 -13.91992 -13.85346 -13.54590 -13.48195 -13.30996 -12.94635 -12.88412 -12.52378 -12.23363 -12.16987 -12.08595 -11.99459 -11.88596 -11.68548 -11.44164 -11.30497 -11.21119 -10.89040 -10.75536 -10.55740 -10.46441 -10.30898 -9.32029 -8.52878 -0.44532 0.12249 1.04960 1.41539 1.57136 1.69998 1.76780 1.86335 1.87842 2.04060 2.27139 2.35417 2.56434 3.15772 3.55082 3.72842 3.80499 3.89361 3.94819 4.00256 4.07007 4.09924 4.19593 4.28231 4.31793 4.41232 4.43573 4.47541 4.54372 4.60734 4.65313 4.67916 4.70393 4.71973 4.72335 4.74692 4.78831 4.90189 5.08302 5.10562 5.16376 5.20294 5.25923 5.33327 5.41593 5.43585 5.50284 5.52228 5.54683 5.60655 5.62951 5.78570 6.03034 6.50938 6.76031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.441 4.441 2 Si 0.964 3.036 3 C -0.442 4.442 4 C -0.397 4.397 5 C -0.109 4.109 6 C -0.082 4.082 7 C 0.062 3.938 8 O -0.291 6.291 9 C 0.155 3.845 10 C -0.194 4.194 11 C -0.059 4.059 12 C -0.087 4.087 13 C -0.090 4.090 14 C -0.132 4.132 15 C -0.099 4.099 16 C -0.127 4.127 17 C -0.001 4.001 18 C -0.169 4.169 19 C -0.071 4.071 20 O -0.528 6.528 21 Si 0.999 3.001 22 H -0.235 1.235 23 H -0.257 1.257 24 H -0.256 1.256 25 C -0.393 4.393 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.130 0.870 45 H 0.072 0.928 46 H 0.363 0.637 47 H 0.081 0.919 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.351 -0.690 -1.434 2.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.549 4.549 2 Si 1.162 2.838 3 C -0.550 4.550 4 C -0.484 4.484 5 C -0.146 4.146 6 C -0.100 4.100 7 C -0.013 4.013 8 O -0.203 6.203 9 C 0.109 3.891 10 C -0.212 4.212 11 C -0.077 4.077 12 C -0.088 4.088 13 C -0.108 4.108 14 C -0.150 4.150 15 C -0.117 4.117 16 C -0.144 4.144 17 C -0.001 4.001 18 C -0.170 4.170 19 C -0.179 4.179 20 O -0.332 6.332 21 Si 0.818 3.182 22 H -0.157 1.157 23 H -0.181 1.181 24 H -0.180 1.180 25 C -0.479 4.479 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.148 0.852 45 H 0.090 0.910 46 H 0.210 0.790 47 H 0.100 0.900 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.849 0.895 -1.538 1.972 hybrid contribution -0.443 -1.491 -0.213 1.570 sum -1.292 -0.596 -1.751 2.256 Atomic orbital electron populations 1.26005 1.19939 1.04549 1.04453 0.80547 0.67409 0.67622 0.68185 1.26012 1.06689 1.17853 1.04471 1.26497 1.05454 1.06393 1.10009 1.21699 1.00905 0.97874 0.94146 1.21683 0.98517 0.95075 0.94772 1.23028 0.86221 0.95139 0.96949 1.86305 1.43372 1.38358 1.52300 1.18426 0.92698 0.86899 0.91094 1.21090 1.02739 0.99792 0.97590 1.20947 0.94188 0.94055 0.98514 1.18039 0.97047 0.97243 0.96431 1.21034 0.96141 0.94369 0.99261 1.20862 0.96547 1.00639 0.96912 1.20922 0.99555 0.95827 0.95398 1.21048 0.96097 0.96543 1.00738 1.17593 0.95012 0.93403 0.94069 1.19289 0.98307 0.98118 1.01285 1.24998 0.94015 1.12356 0.86506 1.86755 1.58843 1.34416 1.53234 0.84620 0.79067 0.74813 0.79724 1.15724 1.18061 1.17985 1.26828 1.02749 1.07806 1.10494 0.91206 0.91134 0.91078 0.91072 0.91029 0.91212 0.90550 0.90444 0.90568 0.92207 0.89869 0.91904 0.92062 0.84981 0.84986 0.85505 0.85845 0.85737 0.85188 0.91049 0.79041 0.90043 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.67 8.65 101.05 0.87 1.55 16 2 Si 0.96 -2.24 13.35 -169.99 -2.27 -4.51 16 3 C -0.44 0.56 8.65 101.05 0.87 1.43 16 4 C -0.40 0.23 5.85 38.29 0.22 0.45 16 5 C -0.11 -0.06 5.21 -25.30 -0.13 -0.19 16 6 C -0.08 -0.01 2.40 -88.68 -0.21 -0.22 16 7 C 0.06 0.04 4.09 37.16 0.15 0.19 16 8 O -0.29 -0.81 6.70 -34.43 -0.23 -1.04 16 9 C 0.16 0.43 6.09 -39.58 -0.24 0.19 16 10 C -0.19 -0.27 8.93 -39.80 -0.36 -0.62 16 11 C -0.06 -0.06 9.76 -39.51 -0.39 -0.45 16 12 C -0.09 -0.20 5.74 -106.81 -0.61 -0.81 16 13 C -0.09 -0.09 9.77 -39.48 -0.39 -0.47 16 14 C -0.13 -0.08 9.95 -39.92 -0.40 -0.47 16 15 C -0.10 -0.06 9.95 -39.93 -0.40 -0.46 16 16 C -0.13 -0.18 9.36 -39.47 -0.37 -0.55 16 17 C 0.00 0.00 5.74 -106.84 -0.61 -0.61 16 18 C -0.17 -0.47 4.48 -104.40 -0.47 -0.94 16 19 C -0.07 -0.14 2.53 36.00 0.09 -0.04 16 20 O -0.53 -1.15 11.69 -50.27 -0.59 -1.74 16 21 Si 1.00 2.77 27.03 -169.99 -4.60 -1.82 16 22 H -0.23 -0.89 6.54 56.52 0.37 -0.52 16 23 H -0.26 -0.81 7.11 56.52 0.40 -0.41 16 24 H -0.26 -0.78 7.11 56.52 0.40 -0.38 16 25 C -0.39 0.63 5.30 38.79 0.21 0.83 16 26 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 27 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 28 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 29 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 30 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 31 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 32 H 0.08 -0.02 8.04 -51.93 -0.42 -0.44 16 33 H 0.08 -0.05 8.04 -51.93 -0.42 -0.47 16 34 H 0.08 0.17 8.12 -51.93 -0.42 -0.25 16 35 H 0.06 0.02 8.04 -51.93 -0.42 -0.40 16 36 H 0.08 0.07 8.13 -51.93 -0.42 -0.36 16 37 H 0.06 -0.02 7.55 -51.93 -0.39 -0.41 16 38 H 0.06 -0.01 7.65 -51.93 -0.40 -0.41 16 39 H 0.13 -0.08 6.21 -52.49 -0.33 -0.40 16 40 H 0.13 -0.18 8.06 -52.48 -0.42 -0.60 16 41 H 0.13 -0.15 8.06 -52.49 -0.42 -0.57 16 42 H 0.12 -0.16 8.06 -52.49 -0.42 -0.59 16 43 H 0.12 -0.18 8.06 -52.49 -0.42 -0.60 16 44 H 0.13 -0.06 5.96 -52.49 -0.31 -0.37 16 45 H 0.07 0.00 5.42 -51.93 -0.28 -0.28 16 46 H 0.36 -0.21 9.11 45.56 0.42 0.20 16 47 H 0.08 -0.16 8.03 -51.93 -0.42 -0.58 16 48 H 0.08 -0.15 8.06 -51.93 -0.42 -0.57 16 LS Contribution 380.37 15.07 5.73 5.73 Total: 0.00 -4.69 380.37 -11.33 -16.02 By element: Atomic # 1 Polarization: -4.22 SS G_CDS: -7.23 Total: -11.44 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -2.15 Total: -1.19 kcal Atomic # 8 Polarization: -1.96 SS G_CDS: -0.82 Total: -2.78 kcal Atomic # 14 Polarization: 0.53 SS G_CDS: -6.87 Total: -6.33 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -4.69 -11.33 -16.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_26801_18051908.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.501 kcal (2) G-P(sol) polarization free energy of solvation -4.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds