Wall clock time and date at job start Fri Mar 5 2021 23:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86296 * 111.24439 * 2 1 4 4 C 1.89341 * 111.45676 * 125.06771 * 2 1 3 5 5 C 1.55147 * 101.35010 * 114.13697 * 4 2 1 6 6 C 1.53575 * 111.28762 * 28.58365 * 5 4 2 7 7 C 1.53005 * 109.47100 * 190.93801 * 6 5 4 8 8 O 1.42901 * 109.47048 * 293.55179 * 7 6 5 9 9 C 1.35889 * 116.99491 * 179.97438 * 8 7 6 10 10 C 1.39800 * 119.57143 * 359.72447 * 9 8 7 11 11 C 1.36015 * 120.92992 * 179.74810 * 10 9 8 12 12 C 1.40547 * 119.73327 * 0.52138 * 11 10 9 13 13 C 1.40537 * 121.22255 * 179.76182 * 12 11 10 14 14 C 1.36102 * 119.67031 * 179.97438 * 13 12 11 15 15 C 1.39381 * 120.99741 * 0.02562 * 14 13 12 16 16 C 1.36083 * 120.98634 * 359.97438 * 15 14 13 17 17 C 1.40583 * 119.66091 * 0.02562 * 16 15 14 18 18 C 1.36613 * 119.56242 * 179.97438 * 9 8 7 19 19 C 1.50695 * 120.18874 * 359.95832 * 18 9 8 20 20 O 1.42905 * 109.47273 * 53.55093 * 19 18 9 21 21 Si 1.86299 * 109.47509 * 293.54956 * 19 18 9 22 22 H 1.48503 * 109.47012 * 65.52438 * 21 19 18 23 23 H 1.48498 * 109.47283 * 185.52471 * 21 19 18 24 24 H 1.48494 * 109.47066 * 305.52867 * 21 19 18 25 25 C 1.56056 * 109.55625 * 311.00778 * 6 5 4 26 26 H 1.09005 * 109.46737 * 59.99831 * 1 2 3 27 27 H 1.08999 * 109.47650 * 300.00473 * 1 2 3 28 28 H 1.08999 * 109.47427 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47036 * 59.99964 * 3 2 1 30 30 H 1.08995 * 109.47213 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47142 * 299.99953 * 3 2 1 32 32 H 1.08998 * 111.04545 * 232.15685 * 4 2 1 33 33 H 1.09003 * 111.04706 * 356.11561 * 4 2 1 34 34 H 1.08994 * 109.12682 * 149.07400 * 5 4 2 35 35 H 1.09003 * 109.12162 * 268.10524 * 5 4 2 36 36 H 1.08993 * 109.47060 * 70.94728 * 6 5 4 37 37 H 1.09002 * 109.46695 * 53.54952 * 7 6 5 38 38 H 1.08994 * 109.47168 * 173.54661 * 7 6 5 39 39 H 1.08001 * 119.53233 * 359.97438 * 10 9 8 40 40 H 1.08011 * 120.13403 * 180.25865 * 11 10 9 41 41 H 1.07998 * 120.16518 * 0.02562 * 13 12 11 42 42 H 1.07994 * 119.50193 * 179.97438 * 14 13 12 43 43 H 1.08001 * 119.50298 * 179.97438 * 15 14 13 44 44 H 1.08001 * 120.16848 * 180.02562 * 16 15 14 45 45 H 1.09006 * 109.47279 * 173.55214 * 19 18 9 46 46 H 0.96700 * 113.99740 * 65.32878 * 20 19 18 47 47 H 1.08999 * 111.41517 * 283.04411 * 25 6 5 48 48 H 1.09003 * 111.48862 * 158.06982 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0125 1.4423 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1417 -2.9772 -1.5067 8 8 5.3027 -3.5594 -0.9106 9 6 5.8103 -4.6705 -1.5058 10 6 5.1874 -5.1886 -2.6451 11 6 5.6749 -6.2963 -3.2659 12 6 6.8144 -6.9387 -2.7519 13 6 7.3417 -8.0880 -3.3653 14 6 8.4470 -8.6845 -2.8411 15 6 9.0665 -8.1733 -1.7019 16 6 8.5844 -7.0625 -1.0811 17 6 7.4444 -6.4186 -1.5932 18 6 6.9197 -5.2697 -0.9800 19 6 7.5762 -4.7010 0.2515 20 8 6.6032 -4.5612 1.2886 21 14 8.3036 -3.0327 -0.1467 22 1 7.2108 -2.0809 -0.4709 23 1 9.0646 -2.5319 1.0260 24 1 9.2150 -3.1556 -1.3125 25 6 2.5568 -1.0141 -1.4446 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 2.1907 2.2612 0.8900 30 1 3.6275 1.7027 0.0005 31 1 2.1908 2.2612 -0.8900 32 1 3.2796 -0.4331 2.0152 33 1 1.7542 -1.3787 2.0840 34 1 4.1053 -2.5197 1.2701 35 1 2.5406 -3.0055 0.5874 36 1 4.5675 -1.0681 -0.6041 37 1 3.3305 -3.7052 -1.5088 38 1 4.3682 -2.6827 -2.5313 39 1 4.3087 -4.7002 -3.0400 40 1 5.1858 -6.6832 -4.1478 41 1 6.8726 -8.4953 -4.2487 42 1 8.8496 -9.5678 -3.3144 43 1 9.9422 -8.6662 -1.3062 44 1 9.0752 -6.6774 -0.1994 45 1 8.3679 -5.3725 0.5841 46 1 6.2413 -5.4005 1.6042 47 1 1.8199 -1.7216 -1.8247 48 1 2.9328 -0.3696 -2.2392 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_26801_18051908.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:12:12 Heat of formation + Delta-G solvation = -68.047139 kcal Electronic energy + Delta-G solvation = -26390.834145 eV Core-core repulsion = 22919.995496 eV Total energy + Delta-G solvation = -3470.838649 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.88739 -40.02034 -37.91959 -37.04403 -36.01938 -33.92393 -30.91892 -30.89436 -29.99490 -29.11706 -28.38615 -27.22334 -26.62482 -24.56502 -23.91211 -23.38700 -21.86609 -20.72140 -19.33152 -18.56727 -18.34846 -17.21972 -17.13123 -16.60861 -16.14756 -15.69522 -15.62822 -15.60641 -14.92573 -14.79666 -14.61402 -14.34858 -14.16794 -14.01169 -13.89074 -13.85320 -13.79542 -13.44817 -13.41745 -13.18609 -12.97462 -12.84760 -12.54391 -12.33552 -12.22548 -12.16428 -12.07749 -12.03182 -11.75172 -11.48018 -11.40549 -11.27632 -10.86243 -10.77270 -10.54626 -10.44718 -10.26013 -9.37719 -8.60552 -0.49363 0.05061 0.97456 1.21529 1.43456 1.50695 1.69866 1.94263 2.00511 2.03678 2.07479 2.31240 2.65177 3.09612 3.50889 3.68779 3.79151 3.87593 3.93345 3.96927 4.05028 4.09740 4.18509 4.28128 4.32691 4.37438 4.42506 4.45111 4.56627 4.59701 4.67464 4.73837 4.76247 4.80395 4.82319 4.85489 4.86278 4.89851 5.05734 5.14059 5.20041 5.21848 5.24135 5.27477 5.39085 5.49283 5.53721 5.57847 5.59662 5.60294 5.63987 5.73490 6.02524 6.43814 6.74535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.451 4.451 2 Si 1.036 2.964 3 C -0.457 4.457 4 C -0.416 4.416 5 C -0.107 4.107 6 C -0.084 4.084 7 C 0.055 3.945 8 O -0.306 6.306 9 C 0.141 3.859 10 C -0.203 4.203 11 C -0.059 4.059 12 C -0.107 4.107 13 C -0.097 4.097 14 C -0.139 4.139 15 C -0.103 4.103 16 C -0.141 4.141 17 C -0.018 4.018 18 C -0.182 4.182 19 C -0.065 4.065 20 O -0.541 6.541 21 Si 1.010 2.990 22 H -0.255 1.255 23 H -0.264 1.264 24 H -0.261 1.261 25 C -0.397 4.397 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.149 0.851 40 H 0.156 0.844 41 H 0.147 0.853 42 H 0.143 0.857 43 H 0.144 0.856 44 H 0.142 0.858 45 H 0.089 0.911 46 H 0.374 0.626 47 H 0.091 0.909 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.958 -1.414 -2.392 3.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 Si 1.229 2.771 3 C -0.564 4.564 4 C -0.500 4.500 5 C -0.145 4.145 6 C -0.102 4.102 7 C -0.019 4.019 8 O -0.220 6.220 9 C 0.095 3.905 10 C -0.221 4.221 11 C -0.077 4.077 12 C -0.107 4.107 13 C -0.115 4.115 14 C -0.157 4.157 15 C -0.121 4.121 16 C -0.159 4.159 17 C -0.018 4.018 18 C -0.184 4.184 19 C -0.174 4.174 20 O -0.347 6.347 21 Si 0.831 3.169 22 H -0.178 1.178 23 H -0.188 1.188 24 H -0.185 1.185 25 C -0.482 4.482 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.167 0.833 40 H 0.174 0.826 41 H 0.164 0.836 42 H 0.161 0.839 43 H 0.162 0.838 44 H 0.160 0.840 45 H 0.107 0.893 46 H 0.222 0.778 47 H 0.110 0.890 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.440 0.164 -2.482 2.874 hybrid contribution -0.229 -1.275 0.096 1.299 sum -1.670 -1.111 -2.386 3.117 Atomic orbital electron populations 1.26111 1.20402 1.04692 1.04653 0.79489 0.66140 0.65667 0.65783 1.26194 1.06469 1.19084 1.04682 1.26738 1.05447 1.06643 1.11187 1.21669 1.00042 0.98439 0.94330 1.21702 0.98829 0.94931 0.94785 1.23203 0.85980 0.95425 0.97301 1.86286 1.44148 1.38593 1.52929 1.18671 0.93076 0.87060 0.91733 1.21298 1.03335 1.00125 0.97320 1.21253 0.93793 0.93663 0.98993 1.18347 0.97688 0.98010 0.96686 1.21318 0.96352 0.93984 0.99854 1.21184 0.96435 1.01200 0.96906 1.21236 1.00015 0.95513 0.95313 1.21269 0.96113 0.97041 1.01479 1.17829 0.95704 0.93671 0.94620 1.19396 0.98723 0.98576 1.01674 1.24865 0.94384 1.11664 0.86523 1.86716 1.59114 1.35548 1.53345 0.84466 0.78113 0.75271 0.79024 1.17826 1.18804 1.18548 1.26934 1.02176 1.08085 1.11018 0.90782 0.91182 0.90979 0.91115 0.91616 0.90766 0.91307 0.90303 0.93034 0.91939 0.91099 0.90921 0.91300 0.83348 0.82626 0.83562 0.83936 0.83807 0.84027 0.89280 0.77750 0.89035 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.75 8.65 113.37 0.98 2.73 16 2 Si 1.04 -4.98 13.35 68.60 0.92 -4.06 16 3 C -0.46 1.12 8.65 113.37 0.98 2.10 16 4 C -0.42 0.05 5.85 72.72 0.43 0.47 16 5 C -0.11 -0.27 5.21 31.52 0.16 -0.10 16 6 C -0.08 -0.10 2.40 -9.54 -0.02 -0.13 16 7 C 0.06 0.11 4.09 71.98 0.29 0.40 16 8 O -0.31 -2.20 6.70 -77.92 -0.52 -2.72 16 9 C 0.14 0.94 6.09 22.27 0.14 1.08 16 10 C -0.20 -0.62 8.93 22.13 0.20 -0.42 16 11 C -0.06 -0.11 9.76 22.32 0.22 0.10 16 12 C -0.11 -0.49 5.74 -21.28 -0.12 -0.61 16 13 C -0.10 -0.12 9.77 22.33 0.22 0.09 16 14 C -0.14 -0.05 9.95 22.05 0.22 0.17 16 15 C -0.10 -0.08 9.95 22.04 0.22 0.14 16 16 C -0.14 -0.42 9.36 22.34 0.21 -0.21 16 17 C -0.02 -0.11 5.74 -21.30 -0.12 -0.23 16 18 C -0.18 -1.22 4.48 -19.72 -0.09 -1.31 16 19 C -0.07 -0.33 2.53 71.23 0.18 -0.15 16 20 O -0.54 -3.18 11.69 -134.60 -1.57 -4.75 16 21 Si 1.01 7.45 27.03 68.60 1.85 9.30 16 22 H -0.25 -2.65 6.54 99.48 0.65 -2.00 16 23 H -0.26 -2.12 7.11 99.48 0.71 -1.41 16 24 H -0.26 -2.04 7.11 99.48 0.71 -1.33 16 25 C -0.40 1.42 5.30 73.04 0.39 1.80 16 26 H 0.07 -0.32 7.96 -2.38 -0.02 -0.34 16 27 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 28 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 29 H 0.07 -0.16 7.96 -2.38 -0.02 -0.18 16 30 H 0.06 -0.07 7.96 -2.39 -0.02 -0.09 16 31 H 0.07 -0.24 7.96 -2.39 -0.02 -0.25 16 32 H 0.07 0.08 8.04 -2.39 -0.02 0.06 16 33 H 0.08 -0.05 8.04 -2.39 -0.02 -0.07 16 34 H 0.05 0.37 8.12 -2.39 -0.02 0.35 16 35 H 0.06 0.10 8.04 -2.39 -0.02 0.08 16 36 H 0.07 0.25 8.13 -2.39 -0.02 0.23 16 37 H 0.07 -0.03 7.55 -2.39 -0.02 -0.05 16 38 H 0.07 0.00 7.65 -2.39 -0.02 -0.02 16 39 H 0.15 -0.21 6.21 -2.91 -0.02 -0.22 16 40 H 0.16 -0.60 8.06 -2.90 -0.02 -0.62 16 41 H 0.15 -0.53 8.06 -2.91 -0.02 -0.55 16 42 H 0.14 -0.59 8.06 -2.91 -0.02 -0.62 16 43 H 0.14 -0.57 8.06 -2.91 -0.02 -0.59 16 44 H 0.14 -0.10 5.96 -2.91 -0.02 -0.12 16 45 H 0.09 0.07 5.42 -2.38 -0.01 0.06 16 46 H 0.37 0.05 9.11 -74.06 -0.67 -0.62 16 47 H 0.09 -0.48 8.03 -2.39 -0.02 -0.50 16 48 H 0.09 -0.40 8.06 -2.39 -0.02 -0.42 16 Total: 0.00 -12.18 380.37 6.11 -6.07 By element: Atomic # 1 Polarization: -10.74 SS G_CDS: 0.96 Total: -9.77 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 4.47 Total: 5.94 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -2.10 Total: -7.47 kcal Atomic # 14 Polarization: 2.47 SS G_CDS: 2.77 Total: 5.24 kcal Total: -12.18 6.11 -6.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_26801_18051908.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.978 kcal (2) G-P(sol) polarization free energy of solvation -12.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds