Wall clock time and date at job start Fri Mar 5 2021 23:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35996 * 117.00309 * 2 1 4 4 C 1.38525 * 120.06994 * 359.97438 * 3 2 1 5 5 C 1.38280 * 119.99809 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.92681 * 180.02562 * 5 4 3 7 7 O 1.42900 * 109.47134 * 299.99429 * 6 5 4 8 8 Si 1.86304 * 109.47190 * 179.97438 * 6 5 4 9 9 H 1.48500 * 109.47032 * 59.99658 * 8 6 5 10 10 H 1.48501 * 109.47051 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46844 * 299.99603 * 8 6 5 12 12 C 1.38214 * 120.14982 * 359.97438 * 5 4 3 13 13 C 1.38287 * 120.14350 * 359.76708 * 12 5 4 14 14 C 1.38522 * 119.99666 * 0.50993 * 13 12 5 15 15 O 1.36002 * 120.07298 * 179.74268 * 14 13 12 16 16 C 1.42901 * 116.99956 * 359.72518 * 15 14 13 17 17 C 1.52995 * 109.47074 * 179.97438 * 16 15 14 18 18 C 1.53566 * 109.47643 * 293.54788 * 17 16 15 19 19 C 1.55147 * 111.29010 * 190.93802 * 18 17 16 20 20 Si 1.89333 * 101.34989 * 28.58791 * 19 18 17 21 21 C 1.86301 * 111.45813 * 114.13512 * 20 19 18 22 22 C 1.86297 * 111.45926 * 239.08100 * 20 19 18 23 23 C 1.56066 * 109.48114 * 173.43596 * 17 16 15 24 24 H 1.08997 * 109.47133 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47152 * 300.00169 * 1 2 3 26 26 H 1.08999 * 109.46629 * 59.99996 * 1 2 3 27 27 H 1.08001 * 119.99995 * 0.02562 * 4 3 2 28 28 H 1.08993 * 109.47245 * 59.99598 * 6 5 4 29 29 H 0.96697 * 114.00418 * 300.00475 * 7 6 5 30 30 H 1.07995 * 119.93186 * 180.02562 * 12 5 4 31 31 H 1.07991 * 120.00251 * 180.27749 * 13 12 5 32 32 H 1.09007 * 109.46885 * 60.00141 * 16 15 14 33 33 H 1.09005 * 109.47062 * 300.00340 * 16 15 14 34 34 H 1.09004 * 109.46872 * 53.55317 * 17 16 15 35 35 H 1.09003 * 109.12206 * 70.45930 * 18 17 16 36 36 H 1.08996 * 109.12221 * 311.42400 * 18 17 16 37 37 H 1.09002 * 111.04815 * 270.56954 * 19 18 17 38 38 H 1.08999 * 111.04827 * 146.61077 * 19 18 17 39 39 H 1.09002 * 109.47148 * 185.06678 * 21 20 19 40 40 H 1.09001 * 109.46900 * 65.06830 * 21 20 19 41 41 H 1.09004 * 109.47198 * 305.06808 * 21 20 19 42 42 H 1.08995 * 109.47233 * 294.93123 * 22 20 19 43 43 H 1.08997 * 109.47080 * 54.93469 * 22 20 19 44 44 H 1.08998 * 109.47258 * 174.93080 * 22 20 19 45 45 H 1.08996 * 111.41269 * 43.11689 * 23 17 16 46 46 H 1.09006 * 111.49251 * 278.12945 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2935 2.3744 -0.0005 5 6 1.9229 3.6057 -0.0011 6 6 1.1022 4.8696 -0.0011 7 8 0.2774 4.9020 -1.1676 8 14 2.2371 6.3470 -0.0011 9 1 3.0938 6.3131 -1.2135 10 1 1.4283 7.5925 -0.0017 11 1 3.0937 6.3131 1.2115 12 6 3.3031 3.6798 -0.0005 13 6 4.0606 2.5229 0.0054 14 6 3.4364 1.2863 0.0001 15 8 4.1800 0.1476 0.0007 16 6 5.6008 0.3005 0.0007 17 6 6.2622 -1.0790 0.0020 18 6 5.9619 -1.7896 1.3298 19 6 6.8274 -3.0667 1.4936 20 14 8.3638 -2.6073 0.4870 21 6 9.8697 -2.4547 1.5732 22 6 8.6536 -3.8132 -0.9030 23 6 7.8053 -0.9166 -0.1662 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 0.2149 2.3193 -0.0005 28 1 0.4737 4.8947 0.8890 29 1 0.7709 4.8822 -1.9989 30 1 3.7909 4.6433 -0.0005 31 1 5.1388 2.5835 0.0103 32 1 5.9070 0.8507 0.8905 33 1 5.9071 0.8500 -0.8895 34 1 5.8688 -1.6713 -0.8242 35 1 4.9080 -2.0668 1.3561 36 1 6.1708 -1.1084 2.1546 37 1 6.3265 -3.9364 1.0684 38 1 7.0812 -3.2361 2.5401 39 1 10.7126 -2.1029 0.9783 40 1 10.1086 -3.4279 2.0019 41 1 9.6689 -1.7439 2.3749 42 1 8.8848 -4.7950 -0.4900 43 1 7.7568 -3.8801 -1.5189 44 1 9.4888 -3.4700 -1.5136 45 1 8.1895 -0.1046 0.4510 46 1 8.0811 -0.7831 -1.2123 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_7_26802_18051908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:20:52 Heat of formation + Delta-G solvation = -132.627638 kcal Electronic energy + Delta-G solvation = -23784.361586 eV Core-core repulsion = 20376.718746 eV Total energy + Delta-G solvation = -3407.642840 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.156 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.60488 -39.64806 -38.86417 -37.22804 -36.40640 -31.83811 -31.37893 -30.52230 -29.26090 -28.53803 -28.49237 -27.39255 -25.98616 -24.29388 -23.06478 -22.37753 -20.75807 -19.48901 -18.43176 -18.13239 -17.24958 -17.06023 -16.47536 -16.11535 -16.07017 -15.88033 -15.61321 -15.54749 -15.00057 -14.61937 -14.38787 -14.00011 -13.95945 -13.78316 -13.70746 -13.61244 -13.47922 -13.35335 -13.27149 -12.77537 -12.58078 -12.55720 -12.27529 -12.21305 -12.09022 -12.02728 -11.96539 -11.62525 -11.51050 -11.35823 -10.90865 -10.58195 -10.43987 -10.35360 -9.69432 -8.75429 0.27109 0.36513 1.14742 1.42931 1.50645 1.54824 1.84037 1.85946 1.90190 2.25528 2.35209 2.53363 2.65596 3.44070 3.65939 3.76056 3.84520 3.92200 4.01950 4.06778 4.16849 4.28591 4.29755 4.40293 4.42030 4.51593 4.56661 4.57500 4.63354 4.64215 4.66628 4.68272 4.70014 4.70934 4.73069 4.74682 5.06534 5.08105 5.13247 5.20555 5.36690 5.39697 5.43118 5.45272 5.49255 5.50850 5.65638 6.15002 6.53643 6.65451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.099 3.901 4 C -0.144 4.144 5 C -0.120 4.120 6 C -0.077 4.077 7 O -0.539 6.539 8 Si 0.951 3.049 9 H -0.251 1.251 10 H -0.255 1.255 11 H -0.251 1.251 12 C -0.121 4.121 13 C -0.170 4.170 14 C 0.111 3.889 15 O -0.301 6.301 16 C 0.064 3.936 17 C -0.082 4.082 18 C -0.109 4.109 19 C -0.398 4.398 20 Si 0.968 3.032 21 C -0.442 4.442 22 C -0.442 4.442 23 C -0.393 4.393 24 H 0.101 0.899 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.141 0.859 28 H 0.117 0.883 29 H 0.377 0.623 30 H 0.124 0.876 31 H 0.138 0.862 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.868 0.105 -0.094 1.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C 0.054 3.946 4 C -0.163 4.163 5 C -0.121 4.121 6 C -0.188 4.188 7 O -0.345 6.345 8 Si 0.774 3.226 9 H -0.175 1.175 10 H -0.179 1.179 11 H -0.174 1.174 12 C -0.139 4.139 13 C -0.189 4.189 14 C 0.064 3.936 15 O -0.215 6.215 16 C -0.011 4.011 17 C -0.100 4.100 18 C -0.147 4.147 19 C -0.485 4.485 20 Si 1.165 2.835 21 C -0.550 4.550 22 C -0.550 4.550 23 C -0.479 4.479 24 H 0.120 0.880 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.158 0.842 28 H 0.135 0.865 29 H 0.224 0.776 30 H 0.141 0.859 31 H 0.155 0.845 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.100 0.900 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.000 0.420 0.351 2.073 hybrid contribution -0.039 -0.027 -0.353 0.356 sum 1.960 0.393 -0.002 1.999 Atomic orbital electron populations 1.23110 0.78234 1.04225 1.01423 1.86193 1.21242 1.25583 1.88829 1.18303 0.89163 0.85409 1.01756 1.20904 1.00348 0.90388 1.04673 1.19971 0.93497 0.95320 1.03292 1.24936 1.00364 1.01587 0.91881 1.86501 1.35663 1.96929 1.15361 0.85662 0.77954 0.77169 0.81789 1.17482 1.17865 1.17432 1.20722 0.93064 0.98069 1.02071 1.21002 1.00516 0.90818 1.06547 1.18275 0.88288 0.86240 1.00748 1.86199 1.18806 1.28031 1.88466 1.23020 0.77876 0.98844 1.01334 1.21676 0.94376 0.94451 0.99520 1.21703 1.00975 0.95943 0.96036 1.26511 1.13806 0.99778 1.08371 0.80503 0.67691 0.67534 0.67730 1.26011 1.14571 1.04653 1.09771 1.26013 1.04939 1.10983 1.13114 1.26833 0.97818 1.16953 1.06286 0.88021 0.92594 0.92490 0.84158 0.86476 0.77616 0.85854 0.84452 0.91947 0.91918 0.89775 0.91148 0.92093 0.90527 0.90398 0.91162 0.91123 0.91066 0.91068 0.91015 0.91177 0.89996 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 9.81 101.05 0.99 0.99 16 2 O -0.31 -1.16 10.28 -34.20 -0.35 -1.51 16 3 C 0.10 0.35 6.70 -39.12 -0.26 0.09 16 4 C -0.14 -0.27 8.60 -39.46 -0.34 -0.61 16 5 C -0.12 -0.14 5.39 -104.62 -0.56 -0.71 16 6 C -0.08 0.01 2.82 36.01 0.10 0.11 16 7 O -0.54 -0.22 12.77 -35.23 -0.45 -0.67 16 8 Si 0.95 -0.42 25.07 -169.99 -4.26 -4.69 16 9 H -0.25 0.07 7.11 56.52 0.40 0.47 16 10 H -0.25 -0.25 7.11 56.52 0.40 0.16 16 11 H -0.25 -0.02 7.11 56.52 0.40 0.38 16 12 C -0.12 -0.13 8.66 -39.57 -0.34 -0.48 16 13 C -0.17 -0.27 9.04 -39.46 -0.36 -0.62 16 14 C 0.11 0.38 6.70 -39.12 -0.26 0.11 16 15 O -0.30 -1.09 9.70 -34.22 -0.33 -1.42 16 16 C 0.06 0.04 4.11 37.15 0.15 0.19 16 17 C -0.08 0.01 2.40 -88.69 -0.21 -0.20 16 18 C -0.11 -0.04 5.21 -25.30 -0.13 -0.18 16 19 C -0.40 0.32 5.85 38.29 0.22 0.54 16 20 Si 0.97 -2.50 13.35 -169.99 -2.27 -4.77 16 21 C -0.44 0.76 8.65 101.05 0.87 1.63 16 22 C -0.44 0.68 8.65 101.05 0.87 1.55 16 23 C -0.39 0.72 5.30 38.80 0.21 0.93 16 24 H 0.10 -0.16 8.14 -51.93 -0.42 -0.58 16 25 H 0.06 -0.06 7.66 -51.93 -0.40 -0.46 16 26 H 0.06 -0.05 7.66 -51.93 -0.40 -0.45 16 27 H 0.14 0.09 6.30 -52.49 -0.33 -0.24 16 28 H 0.12 -0.11 7.96 -51.93 -0.41 -0.53 16 29 H 0.38 -0.99 8.70 45.56 0.40 -0.59 16 30 H 0.12 -0.06 4.86 -52.49 -0.26 -0.31 16 31 H 0.14 -0.07 6.30 -52.49 -0.33 -0.40 16 32 H 0.06 -0.02 7.58 -51.93 -0.39 -0.41 16 33 H 0.06 -0.02 7.68 -51.93 -0.40 -0.42 16 34 H 0.08 0.03 8.14 -51.93 -0.42 -0.40 16 35 H 0.07 0.14 8.12 -51.93 -0.42 -0.28 16 36 H 0.06 0.02 8.04 -51.93 -0.42 -0.40 16 37 H 0.08 -0.04 8.04 -51.93 -0.42 -0.46 16 38 H 0.08 -0.07 8.04 -51.93 -0.42 -0.49 16 39 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 40 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 41 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 42 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 43 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 44 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 45 H 0.08 -0.18 8.03 -51.93 -0.42 -0.60 16 46 H 0.08 -0.18 8.06 -51.93 -0.42 -0.60 16 LS Contribution 367.47 15.07 5.54 5.54 Total: 0.00 -5.56 367.47 -8.33 -13.89 By element: Atomic # 1 Polarization: -2.56 SS G_CDS: -7.15 Total: -9.71 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 0.95 Total: 3.35 kcal Atomic # 8 Polarization: -2.47 SS G_CDS: -1.13 Total: -3.60 kcal Atomic # 14 Polarization: -2.93 SS G_CDS: -6.53 Total: -9.46 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -5.56 -8.33 -13.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_26802_18051908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.739 kcal (2) G-P(sol) polarization free energy of solvation -5.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds