Wall clock time and date at job start Fri Mar 5 2021 23:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35996 * 117.00309 * 2 1 4 4 C 1.38525 * 120.06994 * 359.97438 * 3 2 1 5 5 C 1.38280 * 119.99809 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.92681 * 180.02562 * 5 4 3 7 7 O 1.42900 * 109.47134 * 299.99429 * 6 5 4 8 8 Si 1.86304 * 109.47190 * 179.97438 * 6 5 4 9 9 H 1.48500 * 109.47032 * 59.99658 * 8 6 5 10 10 H 1.48501 * 109.47051 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46844 * 299.99603 * 8 6 5 12 12 C 1.38214 * 120.14982 * 359.97438 * 5 4 3 13 13 C 1.38287 * 120.14350 * 359.76708 * 12 5 4 14 14 C 1.38522 * 119.99666 * 0.50993 * 13 12 5 15 15 O 1.36002 * 120.07298 * 179.74268 * 14 13 12 16 16 C 1.42901 * 116.99956 * 359.72518 * 15 14 13 17 17 C 1.52995 * 109.47074 * 179.97438 * 16 15 14 18 18 C 1.53566 * 109.47643 * 293.54788 * 17 16 15 19 19 C 1.55147 * 111.29010 * 190.93802 * 18 17 16 20 20 Si 1.89333 * 101.34989 * 28.58791 * 19 18 17 21 21 C 1.86301 * 111.45813 * 114.13512 * 20 19 18 22 22 C 1.86297 * 111.45926 * 239.08100 * 20 19 18 23 23 C 1.56066 * 109.48114 * 173.43596 * 17 16 15 24 24 H 1.08997 * 109.47133 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47152 * 300.00169 * 1 2 3 26 26 H 1.08999 * 109.46629 * 59.99996 * 1 2 3 27 27 H 1.08001 * 119.99995 * 0.02562 * 4 3 2 28 28 H 1.08993 * 109.47245 * 59.99598 * 6 5 4 29 29 H 0.96697 * 114.00418 * 300.00475 * 7 6 5 30 30 H 1.07995 * 119.93186 * 180.02562 * 12 5 4 31 31 H 1.07991 * 120.00251 * 180.27749 * 13 12 5 32 32 H 1.09007 * 109.46885 * 60.00141 * 16 15 14 33 33 H 1.09005 * 109.47062 * 300.00340 * 16 15 14 34 34 H 1.09004 * 109.46872 * 53.55317 * 17 16 15 35 35 H 1.09003 * 109.12206 * 70.45930 * 18 17 16 36 36 H 1.08996 * 109.12221 * 311.42400 * 18 17 16 37 37 H 1.09002 * 111.04815 * 270.56954 * 19 18 17 38 38 H 1.08999 * 111.04827 * 146.61077 * 19 18 17 39 39 H 1.09002 * 109.47148 * 185.06678 * 21 20 19 40 40 H 1.09001 * 109.46900 * 65.06830 * 21 20 19 41 41 H 1.09004 * 109.47198 * 305.06808 * 21 20 19 42 42 H 1.08995 * 109.47233 * 294.93123 * 22 20 19 43 43 H 1.08997 * 109.47080 * 54.93469 * 22 20 19 44 44 H 1.08998 * 109.47258 * 174.93080 * 22 20 19 45 45 H 1.08996 * 111.41269 * 43.11689 * 23 17 16 46 46 H 1.09006 * 111.49251 * 278.12945 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2935 2.3744 -0.0005 5 6 1.9229 3.6057 -0.0011 6 6 1.1022 4.8696 -0.0011 7 8 0.2774 4.9020 -1.1676 8 14 2.2371 6.3470 -0.0011 9 1 3.0938 6.3131 -1.2135 10 1 1.4283 7.5925 -0.0017 11 1 3.0937 6.3131 1.2115 12 6 3.3031 3.6798 -0.0005 13 6 4.0606 2.5229 0.0054 14 6 3.4364 1.2863 0.0001 15 8 4.1800 0.1476 0.0007 16 6 5.6008 0.3005 0.0007 17 6 6.2622 -1.0790 0.0020 18 6 5.9619 -1.7896 1.3298 19 6 6.8274 -3.0667 1.4936 20 14 8.3638 -2.6073 0.4870 21 6 9.8697 -2.4547 1.5732 22 6 8.6536 -3.8132 -0.9030 23 6 7.8053 -0.9166 -0.1662 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 0.2149 2.3193 -0.0005 28 1 0.4737 4.8947 0.8890 29 1 0.7709 4.8822 -1.9989 30 1 3.7909 4.6433 -0.0005 31 1 5.1388 2.5835 0.0103 32 1 5.9070 0.8507 0.8905 33 1 5.9071 0.8500 -0.8895 34 1 5.8688 -1.6713 -0.8242 35 1 4.9080 -2.0668 1.3561 36 1 6.1708 -1.1084 2.1546 37 1 6.3265 -3.9364 1.0684 38 1 7.0812 -3.2361 2.5401 39 1 10.7126 -2.1029 0.9783 40 1 10.1086 -3.4279 2.0019 41 1 9.6689 -1.7439 2.3749 42 1 8.8848 -4.7950 -0.4900 43 1 7.7568 -3.8801 -1.5189 44 1 9.4888 -3.4700 -1.5136 45 1 8.1895 -0.1046 0.4510 46 1 8.0811 -0.7831 -1.2123 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_26802_18051908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:20:51 Heat of formation + Delta-G solvation = -124.541014 kcal Electronic energy + Delta-G solvation = -23784.010924 eV Core-core repulsion = 20376.718746 eV Total energy + Delta-G solvation = -3407.292178 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.70971 -39.75341 -38.93402 -37.24462 -36.43604 -31.90597 -31.46978 -30.50874 -29.11227 -28.52389 -28.37422 -27.35506 -26.01159 -24.28424 -23.13436 -22.45707 -20.75451 -19.58842 -18.48560 -18.20729 -17.32569 -17.15628 -16.52466 -16.14954 -16.09820 -15.90567 -15.62499 -15.58075 -15.01206 -14.63501 -14.36727 -13.88244 -13.84588 -13.76716 -13.67115 -13.56617 -13.40737 -13.27285 -13.15695 -12.74868 -12.58451 -12.57089 -12.24282 -12.20073 -12.10345 -12.06600 -12.00415 -11.64694 -11.52591 -11.36291 -10.76499 -10.45843 -10.42839 -10.27941 -9.79460 -8.89210 0.16385 0.24584 1.18046 1.47403 1.53157 1.69165 1.91788 2.01103 2.03975 2.21859 2.29482 2.54647 2.64774 3.48592 3.63616 3.75179 3.82741 3.88056 4.03118 4.06589 4.16162 4.23084 4.33956 4.37377 4.39876 4.54061 4.56990 4.59628 4.64609 4.68666 4.70636 4.75636 4.81770 4.83845 4.86010 4.86895 4.99472 5.10609 5.12782 5.21400 5.33251 5.34208 5.47718 5.52109 5.58687 5.60894 5.65004 6.06792 6.55335 6.68987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.331 6.331 3 C 0.078 3.922 4 C -0.147 4.147 5 C -0.121 4.121 6 C -0.077 4.077 7 O -0.552 6.552 8 Si 0.985 3.015 9 H -0.250 1.250 10 H -0.275 1.275 11 H -0.255 1.255 12 C -0.125 4.125 13 C -0.170 4.170 14 C 0.088 3.912 15 O -0.323 6.323 16 C 0.058 3.942 17 C -0.083 4.083 18 C -0.109 4.109 19 C -0.418 4.418 20 Si 1.042 2.958 21 C -0.453 4.453 22 C -0.457 4.457 23 C -0.398 4.398 24 H 0.114 0.886 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.149 0.851 28 H 0.124 0.876 29 H 0.389 0.611 30 H 0.140 0.860 31 H 0.156 0.844 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.044 0.956 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.091 0.909 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.808 0.926 -0.287 2.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.246 6.246 3 C 0.033 3.967 4 C -0.166 4.166 5 C -0.121 4.121 6 C -0.187 4.187 7 O -0.360 6.360 8 Si 0.809 3.191 9 H -0.174 1.174 10 H -0.201 1.201 11 H -0.179 1.179 12 C -0.143 4.143 13 C -0.188 4.188 14 C 0.042 3.958 15 O -0.238 6.238 16 C -0.016 4.016 17 C -0.101 4.101 18 C -0.147 4.147 19 C -0.502 4.502 20 Si 1.235 2.765 21 C -0.561 4.561 22 C -0.564 4.564 23 C -0.482 4.482 24 H 0.132 0.868 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.167 0.833 28 H 0.142 0.858 29 H 0.238 0.762 30 H 0.158 0.842 31 H 0.174 0.826 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.109 0.891 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.927 1.227 0.154 3.177 hybrid contribution -0.386 -0.292 -0.287 0.563 sum 2.541 0.935 -0.133 2.711 Atomic orbital electron populations 1.23308 0.76689 1.05333 1.02171 1.86148 1.23046 1.26269 1.89111 1.18603 0.89653 0.85772 1.02680 1.21041 1.00778 0.90263 1.04506 1.20178 0.93826 0.95547 1.02586 1.25029 1.00507 1.01063 0.92118 1.86471 1.36453 1.96876 1.16154 0.85183 0.77016 0.75512 0.81395 1.17365 1.20074 1.17932 1.20970 0.93151 0.98641 1.01554 1.21247 1.01568 0.90275 1.05745 1.18577 0.88575 0.86849 1.01762 1.86176 1.20161 1.28700 1.88736 1.23225 0.76732 0.99496 1.02184 1.21696 0.95724 0.93992 0.98715 1.21696 0.99720 0.96675 0.96597 1.26765 1.15337 0.98953 1.09114 0.79397 0.65397 0.65913 0.65768 1.26136 1.15152 1.04682 1.10084 1.26191 1.04928 1.11513 1.13800 1.26944 0.96089 1.18033 1.07166 0.86816 0.91764 0.91749 0.83323 0.85797 0.76213 0.84215 0.82610 0.91074 0.90909 0.90593 0.93691 0.91994 0.91152 0.90364 0.90733 0.91208 0.91038 0.91155 0.91481 0.90732 0.89063 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.02 9.81 113.37 1.11 1.13 16 2 O -0.33 -3.13 10.28 -79.66 -0.82 -3.95 16 3 C 0.08 0.66 6.70 22.57 0.15 0.81 16 4 C -0.15 -0.65 8.60 22.35 0.19 -0.46 16 5 C -0.12 -0.27 5.39 -19.86 -0.11 -0.38 16 6 C -0.08 0.06 2.82 71.24 0.20 0.26 16 7 O -0.55 -0.22 12.77 -148.98 -1.90 -2.12 16 8 Si 0.98 -1.58 25.07 68.60 1.72 0.14 16 9 H -0.25 0.46 7.11 99.48 0.71 1.16 16 10 H -0.28 -0.52 7.11 99.48 0.71 0.19 16 11 H -0.26 0.21 7.11 99.48 0.71 0.92 16 12 C -0.13 -0.22 8.66 22.28 0.19 -0.03 16 13 C -0.17 -0.55 9.04 22.35 0.20 -0.35 16 14 C 0.09 0.71 6.70 22.57 0.15 0.86 16 15 O -0.32 -2.88 9.70 -79.73 -0.77 -3.65 16 16 C 0.06 0.11 4.11 71.98 0.30 0.41 16 17 C -0.08 -0.04 2.40 -9.54 -0.02 -0.06 16 18 C -0.11 -0.25 5.21 31.52 0.16 -0.09 16 19 C -0.42 0.27 5.85 72.72 0.43 0.70 16 20 Si 1.04 -5.81 13.35 68.60 0.92 -4.89 16 21 C -0.45 1.96 8.65 113.37 0.98 2.95 16 22 C -0.46 1.52 8.65 113.37 0.98 2.50 16 23 C -0.40 1.74 5.30 73.05 0.39 2.12 16 24 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 25 H 0.06 -0.08 7.66 -2.39 -0.02 -0.10 16 26 H 0.06 -0.07 7.66 -2.39 -0.02 -0.09 16 27 H 0.15 0.26 6.30 -2.91 -0.02 0.24 16 28 H 0.12 -0.29 7.96 -2.39 -0.02 -0.31 16 29 H 0.39 -2.21 8.70 -74.06 -0.64 -2.86 16 30 H 0.14 -0.29 4.86 -2.91 -0.01 -0.31 16 31 H 0.16 -0.25 6.30 -2.92 -0.02 -0.26 16 32 H 0.07 -0.03 7.58 -2.38 -0.02 -0.05 16 33 H 0.07 -0.04 7.68 -2.38 -0.02 -0.06 16 34 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.04 0.31 8.12 -2.39 -0.02 0.29 16 36 H 0.06 0.10 8.04 -2.39 -0.02 0.08 16 37 H 0.07 0.03 8.04 -2.39 -0.02 0.01 16 38 H 0.08 -0.08 8.04 -2.39 -0.02 -0.10 16 39 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 40 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 41 H 0.07 -0.29 7.96 -2.38 -0.02 -0.31 16 42 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 43 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 44 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 45 H 0.09 -0.53 8.03 -2.39 -0.02 -0.55 16 46 H 0.09 -0.50 8.06 -2.38 -0.02 -0.52 16 Total: 0.00 -13.75 367.47 5.51 -8.24 By element: Atomic # 1 Polarization: -5.22 SS G_CDS: 1.07 Total: -4.15 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: 5.31 Total: 10.38 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -3.49 Total: -9.72 kcal Atomic # 14 Polarization: -7.38 SS G_CDS: 2.64 Total: -4.75 kcal Total: -13.75 5.51 -8.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_26802_18051908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.303 kcal (2) G-P(sol) polarization free energy of solvation -13.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds