Wall clock time and date at job start Fri Mar 5 2021 23:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 C 1.52995 * 109.47643 * 190.93802 * 6 5 4 8 8 O 1.42901 * 109.47074 * 293.54788 * 7 6 5 9 9 C 1.35919 * 117.00178 * 179.97438 * 8 7 6 10 10 C 1.38707 * 120.04408 * 359.72069 * 9 8 7 11 11 C 1.38166 * 119.95042 * 179.70080 * 10 9 8 12 12 C 1.38319 * 120.04761 * 0.57982 * 11 10 9 13 13 Br 1.89098 * 119.95454 * 179.74433 * 12 11 10 14 14 C 1.38370 * 120.08763 * 359.71536 * 12 11 10 15 15 C 1.38112 * 120.05000 * 359.97438 * 14 12 11 16 16 C 1.50701 * 120.02646 * 180.02562 * 15 14 12 17 17 O 1.42898 * 109.47027 * 104.97596 * 16 15 14 18 18 Si 1.86297 * 109.46883 * 344.97814 * 16 15 14 19 19 H 1.48499 * 109.47382 * 59.99814 * 18 16 15 20 20 H 1.48498 * 109.47145 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47180 * 299.99731 * 18 16 15 22 22 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 23 23 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 24 24 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 25 25 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 27 27 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 29 29 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 30 30 H 1.08999 * 111.05229 * 356.11516 * 4 2 1 31 31 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 32 32 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 33 33 H 1.09004 * 109.47418 * 70.93608 * 6 5 4 34 34 H 1.09007 * 109.46916 * 53.54343 * 7 6 5 35 35 H 1.09005 * 109.47687 * 173.54545 * 7 6 5 36 36 H 1.07995 * 120.02253 * 359.97438 * 10 9 8 37 37 H 1.08002 * 119.97643 * 180.29553 * 11 10 9 38 38 H 1.08004 * 119.96970 * 180.02562 * 14 12 11 39 39 H 1.08996 * 109.47257 * 224.98172 * 16 15 14 40 40 H 0.96702 * 114.00323 * 60.00382 * 17 16 15 41 41 H 1.08996 * 111.41269 * 283.05303 * 22 6 5 42 42 H 1.09006 * 111.49251 * 158.06559 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1417 -2.9771 -1.5067 8 8 5.3027 -3.5593 -0.9107 9 6 5.8105 -4.6707 -1.5060 10 6 5.2003 -5.1932 -2.6368 11 6 5.7217 -6.3194 -3.2440 12 6 6.8444 -6.9328 -2.7180 13 35 7.5516 -8.4783 -3.5470 14 6 7.4510 -6.4167 -1.5865 15 6 6.9367 -5.2874 -0.9802 16 6 7.5981 -4.7254 0.2518 17 8 8.3280 -3.5468 -0.0950 18 14 8.7651 -5.9918 0.9625 19 1 9.8019 -6.3302 -0.0453 20 1 9.4174 -5.4379 2.1761 21 1 8.0067 -7.2166 1.3229 22 6 2.5568 -1.0142 -1.4447 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 2.1907 2.2612 0.8899 27 1 3.6274 1.7027 -0.0005 28 1 2.1908 2.2612 -0.8900 29 1 3.2797 -0.4330 2.0151 30 1 1.7543 -1.3786 2.0840 31 1 4.1055 -2.5196 1.2701 32 1 2.5407 -3.0054 0.5873 33 1 4.5675 -1.0680 -0.6042 34 1 3.3305 -3.7052 -1.5088 35 1 4.3683 -2.6826 -2.5315 36 1 4.3209 -4.7174 -3.0448 37 1 5.2497 -6.7238 -4.1272 38 1 8.3277 -6.8970 -1.1777 39 1 6.8371 -4.4771 0.9916 40 1 7.7824 -2.8430 -0.4721 41 1 1.8198 -1.7216 -1.8246 42 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_7_26869_18051908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:30:07 Heat of formation + Delta-G solvation = -100.484297 kcal Electronic energy + Delta-G solvation = -21942.860647 eV Core-core repulsion = 18671.013455 eV Total energy + Delta-G solvation = -3271.847192 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 358.051 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.61420 -39.17903 -37.50933 -36.77681 -33.10145 -32.63548 -30.88996 -29.71727 -29.31348 -28.59510 -27.43217 -26.77240 -24.48203 -23.19871 -22.48634 -20.85783 -19.43363 -18.28077 -17.63272 -17.18867 -16.65702 -16.14932 -15.98421 -15.66059 -15.39246 -15.20332 -14.67769 -14.36054 -14.17406 -14.05509 -14.01279 -13.89742 -13.67010 -13.53599 -13.38166 -12.97404 -12.96201 -12.86496 -12.51717 -12.32494 -12.19188 -11.87554 -11.77802 -11.55452 -11.36135 -11.29698 -11.14746 -10.97955 -10.97845 -10.68300 -10.45602 -10.16262 -9.22456 0.01810 0.03601 0.65606 1.22384 1.45420 1.53852 1.58010 1.75413 1.77990 2.00435 2.01393 2.39058 2.44062 3.43184 3.55698 3.63766 3.79183 3.89280 3.91897 3.97468 4.03908 4.19385 4.27209 4.38473 4.40728 4.43722 4.51543 4.57870 4.60819 4.62205 4.63843 4.65119 4.65510 4.92015 4.94456 5.01430 5.02900 5.08354 5.22462 5.28772 5.33978 5.39530 5.42787 5.43485 6.17502 6.61042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 0.970 3.030 3 C -0.443 4.443 4 C -0.399 4.399 5 C -0.110 4.110 6 C -0.082 4.082 7 C 0.064 3.936 8 O -0.309 6.309 9 C 0.161 3.839 10 C -0.201 4.201 11 C -0.044 4.044 12 C -0.124 4.124 13 Br -0.045 7.045 14 C -0.056 4.056 15 C -0.142 4.142 16 C -0.080 4.080 17 O -0.536 6.536 18 Si 1.004 2.996 19 H -0.249 1.249 20 H -0.252 1.252 21 H -0.246 1.246 22 C -0.394 4.394 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.080 0.920 40 H 0.369 0.631 41 H 0.082 0.918 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.084 2.451 -0.086 4.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.168 2.832 3 C -0.551 4.551 4 C -0.485 4.485 5 C -0.147 4.147 6 C -0.101 4.101 7 C -0.011 4.011 8 O -0.222 6.222 9 C 0.114 3.886 10 C -0.221 4.221 11 C -0.064 4.064 12 C -0.203 4.203 13 Br 0.040 6.960 14 C -0.075 4.075 15 C -0.143 4.143 16 C -0.188 4.188 17 O -0.341 6.341 18 Si 0.824 3.176 19 H -0.173 1.173 20 H -0.175 1.175 21 H -0.169 1.169 22 C -0.480 4.480 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.098 0.902 40 H 0.217 0.783 41 H 0.101 0.899 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.732 1.062 0.343 2.951 hybrid contribution -1.200 0.886 -0.660 1.631 sum -3.932 1.948 -0.317 4.400 Atomic orbital electron populations 1.26022 1.19955 1.04595 1.04552 0.80473 0.67430 0.67555 0.67759 1.26021 1.06680 1.17848 1.04573 1.26510 1.05561 1.06293 1.10170 1.21715 1.00686 0.98208 0.94105 1.21709 0.98790 0.94922 0.94672 1.23110 0.85576 0.95154 0.97233 1.86066 1.44362 1.38741 1.53074 1.18853 0.91918 0.86617 0.91169 1.21298 1.03253 0.99635 0.97896 1.20968 0.93184 0.93631 0.98610 1.21607 1.00744 0.97954 1.00041 1.96770 1.85332 1.33809 1.80053 1.20931 0.98580 0.94435 0.93581 1.19620 0.96489 0.97503 1.00737 1.25167 1.02909 0.94906 0.95826 1.86697 1.37443 1.25043 1.84925 0.84602 0.77889 0.75426 0.79721 1.17280 1.17548 1.16886 1.26836 1.02623 1.07853 1.10646 0.91128 0.91086 0.91067 0.91028 0.91011 0.91147 0.90444 0.90318 0.91259 0.92017 0.89633 0.91583 0.91499 0.84241 0.84356 0.84252 0.90215 0.78302 0.89942 0.89906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 1.11 8.65 101.05 0.87 1.99 16 2 Si 0.97 -3.61 13.35 -169.99 -2.27 -5.88 16 3 C -0.44 1.09 8.65 101.05 0.87 1.96 16 4 C -0.40 0.88 5.85 38.29 0.22 1.10 16 5 C -0.11 0.17 5.21 -25.30 -0.13 0.04 16 6 C -0.08 0.19 2.40 -88.69 -0.21 -0.03 16 7 C 0.06 -0.11 4.11 37.15 0.15 0.04 16 8 O -0.31 0.00 8.83 -19.49 -0.17 -0.18 16 9 C 0.16 0.15 6.62 -39.22 -0.26 -0.11 16 10 C -0.20 0.00 9.04 -39.43 -0.36 -0.36 16 11 C -0.04 -0.02 9.78 -39.58 -0.39 -0.41 16 12 C -0.12 -0.22 6.22 -39.50 -0.25 -0.47 16 13 Br -0.04 -0.08 33.70 -68.01 -2.29 -2.37 16 14 C -0.06 -0.11 8.40 -39.58 -0.33 -0.44 16 15 C -0.14 -0.23 5.28 -104.48 -0.55 -0.78 16 16 C -0.08 -0.09 2.33 36.01 0.08 -0.01 16 17 O -0.54 -1.04 12.65 -35.23 -0.45 -1.48 16 18 Si 1.00 1.13 25.75 -169.99 -4.38 -3.25 16 19 H -0.25 -0.43 6.73 56.52 0.38 -0.05 16 20 H -0.25 -0.49 7.11 56.52 0.40 -0.09 16 21 H -0.25 -0.18 7.11 56.52 0.40 0.23 16 22 C -0.39 1.29 5.30 38.80 0.21 1.49 16 23 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 24 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 25 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 26 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 27 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 28 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 29 H 0.08 -0.15 8.04 -51.93 -0.42 -0.57 16 30 H 0.08 -0.16 8.04 -51.93 -0.42 -0.58 16 31 H 0.07 -0.04 8.12 -51.93 -0.42 -0.46 16 32 H 0.06 -0.10 8.04 -51.93 -0.42 -0.51 16 33 H 0.09 -0.19 8.14 -51.93 -0.42 -0.61 16 34 H 0.07 -0.15 7.58 -51.93 -0.39 -0.55 16 35 H 0.07 -0.16 7.68 -51.93 -0.40 -0.56 16 36 H 0.14 -0.29 6.30 -52.49 -0.33 -0.62 16 37 H 0.14 -0.16 8.06 -52.49 -0.42 -0.58 16 38 H 0.14 0.19 4.89 -52.48 -0.26 -0.06 16 39 H 0.08 0.01 7.83 -51.93 -0.41 -0.40 16 40 H 0.37 -0.11 8.61 45.56 0.39 0.29 16 41 H 0.08 -0.29 8.03 -51.93 -0.42 -0.70 16 42 H 0.08 -0.29 8.06 -51.93 -0.42 -0.71 16 LS Contribution 358.24 15.07 5.40 5.40 Total: 0.00 -3.48 358.24 -10.27 -13.75 By element: Atomic # 1 Polarization: -3.96 SS G_CDS: -6.05 Total: -10.00 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -0.06 Total: 4.01 kcal Atomic # 8 Polarization: -1.04 SS G_CDS: -0.62 Total: -1.66 kcal Atomic # 14 Polarization: -2.48 SS G_CDS: -6.65 Total: -9.13 kcal Atomic # 35 Polarization: -0.08 SS G_CDS: -2.29 Total: -2.37 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -3.48 -10.27 -13.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_26869_18051908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.737 kcal (2) G-P(sol) polarization free energy of solvation -3.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds