Wall clock time and date at job start Fri Mar 5 2021 23:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 C 1.52995 * 109.47643 * 190.93802 * 6 5 4 8 8 O 1.42901 * 109.47074 * 293.54788 * 7 6 5 9 9 C 1.35919 * 117.00178 * 179.97438 * 8 7 6 10 10 C 1.38707 * 120.04408 * 359.72069 * 9 8 7 11 11 C 1.38166 * 119.95042 * 179.70080 * 10 9 8 12 12 C 1.38319 * 120.04761 * 0.57982 * 11 10 9 13 13 Br 1.89098 * 119.95454 * 179.74433 * 12 11 10 14 14 C 1.38370 * 120.08763 * 359.71536 * 12 11 10 15 15 C 1.38112 * 120.05000 * 359.97438 * 14 12 11 16 16 C 1.50701 * 120.02646 * 180.02562 * 15 14 12 17 17 O 1.42898 * 109.47027 * 104.97596 * 16 15 14 18 18 Si 1.86297 * 109.46883 * 344.97814 * 16 15 14 19 19 H 1.48499 * 109.47382 * 59.99814 * 18 16 15 20 20 H 1.48498 * 109.47145 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47180 * 299.99731 * 18 16 15 22 22 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 23 23 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 24 24 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 25 25 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 27 27 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 29 29 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 30 30 H 1.08999 * 111.05229 * 356.11516 * 4 2 1 31 31 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 32 32 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 33 33 H 1.09004 * 109.47418 * 70.93608 * 6 5 4 34 34 H 1.09007 * 109.46916 * 53.54343 * 7 6 5 35 35 H 1.09005 * 109.47687 * 173.54545 * 7 6 5 36 36 H 1.07995 * 120.02253 * 359.97438 * 10 9 8 37 37 H 1.08002 * 119.97643 * 180.29553 * 11 10 9 38 38 H 1.08004 * 119.96970 * 180.02562 * 14 12 11 39 39 H 1.08996 * 109.47257 * 224.98172 * 16 15 14 40 40 H 0.96702 * 114.00323 * 60.00382 * 17 16 15 41 41 H 1.08996 * 111.41269 * 283.05303 * 22 6 5 42 42 H 1.09006 * 111.49251 * 158.06559 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1417 -2.9771 -1.5067 8 8 5.3027 -3.5593 -0.9107 9 6 5.8105 -4.6707 -1.5060 10 6 5.2003 -5.1932 -2.6368 11 6 5.7217 -6.3194 -3.2440 12 6 6.8444 -6.9328 -2.7180 13 35 7.5516 -8.4783 -3.5470 14 6 7.4510 -6.4167 -1.5865 15 6 6.9367 -5.2874 -0.9802 16 6 7.5981 -4.7254 0.2518 17 8 8.3280 -3.5468 -0.0950 18 14 8.7651 -5.9918 0.9625 19 1 9.8019 -6.3302 -0.0453 20 1 9.4174 -5.4379 2.1761 21 1 8.0067 -7.2166 1.3229 22 6 2.5568 -1.0142 -1.4447 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 2.1907 2.2612 0.8899 27 1 3.6274 1.7027 -0.0005 28 1 2.1908 2.2612 -0.8900 29 1 3.2797 -0.4330 2.0151 30 1 1.7543 -1.3786 2.0840 31 1 4.1055 -2.5196 1.2701 32 1 2.5407 -3.0054 0.5873 33 1 4.5675 -1.0680 -0.6042 34 1 3.3305 -3.7052 -1.5088 35 1 4.3683 -2.6826 -2.5315 36 1 4.3209 -4.7174 -3.0448 37 1 5.2497 -6.7238 -4.1272 38 1 8.3277 -6.8970 -1.1777 39 1 6.8371 -4.4771 0.9916 40 1 7.7824 -2.8430 -0.4721 41 1 1.8198 -1.7216 -1.8246 42 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_26869_18051908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:30:07 Heat of formation + Delta-G solvation = -89.226983 kcal Electronic energy + Delta-G solvation = -21942.372494 eV Core-core repulsion = 18671.013455 eV Total energy + Delta-G solvation = -3271.359038 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 358.051 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.60529 -39.13850 -37.59965 -36.63309 -33.15599 -32.67140 -30.74183 -29.72438 -29.09575 -28.36968 -27.27457 -26.80853 -24.34643 -23.15375 -22.52420 -20.68100 -19.41596 -18.35903 -17.61525 -17.12783 -16.67123 -16.16779 -15.89368 -15.62780 -15.37827 -15.18851 -14.63543 -14.31389 -14.12514 -13.89160 -13.82620 -13.77432 -13.46324 -13.37181 -13.17497 -12.97846 -12.92395 -12.72394 -12.37959 -12.29522 -12.14946 -11.92863 -11.74960 -11.47366 -11.40869 -11.27001 -11.20520 -11.06282 -10.75565 -10.44156 -10.25468 -10.20209 -9.25838 -0.02013 -0.00866 0.57422 1.13082 1.43446 1.45729 1.70937 1.89075 2.02025 2.02932 2.11717 2.35504 2.66092 3.41350 3.57260 3.79496 3.86159 3.90313 4.02703 4.07009 4.09291 4.21550 4.38469 4.42287 4.56997 4.58456 4.61451 4.73222 4.76606 4.81789 4.84884 4.85724 4.86369 4.90488 5.00532 5.05824 5.15301 5.24354 5.37477 5.37806 5.51770 5.55581 5.61794 5.65439 6.22761 6.60935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.458 4.458 2 Si 1.040 2.960 3 C -0.459 4.459 4 C -0.416 4.416 5 C -0.111 4.111 6 C -0.082 4.082 7 C 0.057 3.943 8 O -0.315 6.315 9 C 0.158 3.842 10 C -0.199 4.199 11 C -0.046 4.046 12 C -0.137 4.137 13 Br -0.051 7.051 14 C -0.069 4.069 15 C -0.153 4.153 16 C -0.079 4.079 17 O -0.549 6.549 18 Si 1.018 2.982 19 H -0.261 1.261 20 H -0.265 1.265 21 H -0.240 1.240 22 C -0.397 4.397 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.163 0.837 37 H 0.155 0.845 38 H 0.138 0.862 39 H 0.088 0.912 40 H 0.378 0.622 41 H 0.089 0.911 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.170 2.910 -0.883 5.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.565 4.565 2 Si 1.233 2.767 3 C -0.566 4.566 4 C -0.501 4.501 5 C -0.149 4.149 6 C -0.101 4.101 7 C -0.017 4.017 8 O -0.228 6.228 9 C 0.111 3.889 10 C -0.218 4.218 11 C -0.065 4.065 12 C -0.216 4.216 13 Br 0.034 6.966 14 C -0.089 4.089 15 C -0.155 4.155 16 C -0.187 4.187 17 O -0.356 6.356 18 Si 0.839 3.161 19 H -0.186 1.186 20 H -0.190 1.190 21 H -0.163 1.163 22 C -0.482 4.482 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.180 0.820 37 H 0.172 0.828 38 H 0.156 0.844 39 H 0.106 0.894 40 H 0.227 0.773 41 H 0.108 0.892 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.827 1.524 -0.440 4.143 hybrid contribution -0.881 0.789 -0.378 1.241 sum -4.708 2.313 -0.819 5.309 Atomic orbital electron populations 1.26203 1.21267 1.04551 1.04464 0.79403 0.65601 0.65653 0.66008 1.26220 1.06717 1.19174 1.04482 1.26715 1.05543 1.06685 1.11128 1.21727 1.00139 0.98459 0.94534 1.21710 0.99167 0.94886 0.94293 1.23307 0.85218 0.95399 0.97752 1.86073 1.44996 1.38398 1.53320 1.18940 0.91736 0.86812 0.91380 1.21554 1.03658 0.99265 0.97332 1.21207 0.92692 0.93614 0.99004 1.21714 1.01474 0.98129 1.00311 1.96751 1.85553 1.34236 1.80075 1.21006 0.98890 0.94925 0.94062 1.19674 0.97097 0.97705 1.01014 1.25142 1.02928 0.94610 0.96028 1.86665 1.38224 1.25580 1.85097 0.84419 0.77462 0.75629 0.78581 1.18588 1.18978 1.16292 1.26900 1.02309 1.08042 1.10949 0.90982 0.91450 0.91092 0.91405 0.91222 0.90992 0.90968 0.90593 0.92759 0.92004 0.89740 0.90754 0.90420 0.81969 0.82763 0.84443 0.89359 0.77325 0.89185 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.57 8.65 113.37 0.98 3.55 16 2 Si 1.04 -8.44 13.35 68.60 0.92 -7.52 16 3 C -0.46 2.42 8.65 113.37 0.98 3.40 16 4 C -0.42 1.77 5.85 72.72 0.43 2.19 16 5 C -0.11 0.35 5.21 31.52 0.16 0.52 16 6 C -0.08 0.44 2.40 -9.54 -0.02 0.41 16 7 C 0.06 -0.28 4.11 71.98 0.30 0.02 16 8 O -0.31 0.15 8.83 -92.64 -0.82 -0.67 16 9 C 0.16 0.22 6.62 22.50 0.15 0.37 16 10 C -0.20 0.22 9.04 22.36 0.20 0.42 16 11 C -0.05 -0.02 9.78 22.27 0.22 0.20 16 12 C -0.14 -0.52 6.22 22.32 0.14 -0.38 16 13 Br -0.05 -0.20 33.70 -20.37 -0.69 -0.89 16 14 C -0.07 -0.32 8.40 22.27 0.19 -0.14 16 15 C -0.15 -0.56 5.28 -19.77 -0.10 -0.66 16 16 C -0.08 -0.23 2.33 71.24 0.17 -0.06 16 17 O -0.55 -2.46 12.65 -148.98 -1.89 -4.35 16 18 Si 1.02 3.35 25.75 68.60 1.77 5.12 16 19 H -0.26 -1.32 6.73 99.48 0.67 -0.65 16 20 H -0.27 -1.38 7.11 99.48 0.71 -0.67 16 21 H -0.24 -0.50 7.11 99.48 0.71 0.21 16 22 C -0.40 3.18 5.30 73.05 0.39 3.57 16 23 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 24 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 25 H 0.07 -0.38 7.96 -2.38 -0.02 -0.40 16 26 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 27 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 28 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 29 H 0.07 -0.23 8.04 -2.39 -0.02 -0.25 16 30 H 0.08 -0.29 8.04 -2.39 -0.02 -0.31 16 31 H 0.05 -0.02 8.12 -2.39 -0.02 -0.04 16 32 H 0.06 -0.20 8.04 -2.39 -0.02 -0.22 16 33 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 34 H 0.07 -0.47 7.58 -2.38 -0.02 -0.49 16 35 H 0.08 -0.52 7.68 -2.38 -0.02 -0.54 16 36 H 0.16 -1.01 6.30 -2.91 -0.02 -1.03 16 37 H 0.15 -0.53 8.06 -2.91 -0.02 -0.55 16 38 H 0.14 0.56 4.89 -2.91 -0.01 0.54 16 39 H 0.09 0.07 7.83 -2.39 -0.02 0.05 16 40 H 0.38 -0.05 8.61 -74.06 -0.64 -0.69 16 41 H 0.09 -0.81 8.03 -2.39 -0.02 -0.83 16 42 H 0.09 -0.80 8.06 -2.38 -0.02 -0.82 16 Total: 0.00 -8.41 358.24 4.55 -3.86 By element: Atomic # 1 Polarization: -10.06 SS G_CDS: 1.09 Total: -8.98 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 4.17 Total: 13.42 kcal Atomic # 8 Polarization: -2.31 SS G_CDS: -2.70 Total: -5.01 kcal Atomic # 14 Polarization: -5.08 SS G_CDS: 2.68 Total: -2.40 kcal Atomic # 35 Polarization: -0.20 SS G_CDS: -0.69 Total: -0.89 kcal Total: -8.41 4.55 -3.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_26869_18051908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.367 kcal (2) G-P(sol) polarization free energy of solvation -8.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -3.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds