Wall clock time and date at job start Fri Mar 5 2021 23:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35897 * 117.00481 * 180.02562 * 3 2 1 5 5 C 1.38757 * 120.02287 * 359.97438 * 4 3 2 6 6 C 1.38193 * 120.05390 * 179.97438 * 5 4 3 7 7 C 1.38155 * 120.11004 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.97034 * 180.02562 * 7 6 5 9 9 O 1.42900 * 109.47272 * 104.99627 * 8 7 6 10 10 Si 1.86298 * 109.47504 * 344.99201 * 8 7 6 11 11 H 1.48503 * 109.46746 * 60.00101 * 10 8 7 12 12 H 1.48500 * 109.47324 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47045 * 300.00582 * 10 8 7 14 14 C 1.38790 * 120.05167 * 359.97313 * 7 6 5 15 15 O 1.35900 * 120.02321 * 180.02562 * 14 7 6 16 16 C 1.42900 * 116.99698 * 180.02562 * 15 14 7 17 17 C 1.53007 * 109.46842 * 179.97438 * 16 15 14 18 18 C 1.53568 * 109.47286 * 66.45430 * 17 16 15 19 19 C 1.55152 * 111.28949 * 169.05696 * 18 17 16 20 20 Si 1.89326 * 101.35156 * 331.41557 * 19 18 17 21 21 C 1.86301 * 111.46224 * 120.84842 * 20 19 18 22 22 C 1.86296 * 111.45982 * 245.79915 * 20 19 18 23 23 C 1.55919 * 109.46978 * 186.50060 * 17 16 15 24 24 C 1.38610 * 119.94721 * 359.74859 * 14 7 6 25 25 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 29 29 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 30 30 H 1.07999 * 119.97216 * 359.97438 * 5 4 3 31 31 H 1.08007 * 119.94479 * 179.97438 * 6 5 4 32 32 H 1.09011 * 109.46859 * 224.99262 * 8 7 6 33 33 H 0.96697 * 114.00346 * 299.99816 * 9 8 7 34 34 H 1.08997 * 109.47217 * 299.99449 * 16 15 14 35 35 H 1.08996 * 109.47673 * 60.00102 * 16 15 14 36 36 H 1.08996 * 109.47153 * 306.44700 * 17 16 15 37 37 H 1.08992 * 109.12429 * 289.54388 * 18 17 16 38 38 H 1.09004 * 109.12446 * 48.57875 * 18 17 16 39 39 H 1.09001 * 111.04211 * 89.43073 * 19 18 17 40 40 H 1.08999 * 111.04647 * 213.35248 * 19 18 17 41 41 H 1.09008 * 109.46284 * 60.00222 * 21 20 19 42 42 H 1.09001 * 109.47097 * 179.97438 * 21 20 19 43 43 H 1.08993 * 109.47316 * 300.00274 * 21 20 19 44 44 H 1.09001 * 109.47620 * 59.99560 * 22 20 19 45 45 H 1.09003 * 109.47360 * 179.97438 * 22 20 19 46 46 H 1.09009 * 109.47025 * 299.99876 * 22 20 19 47 47 H 1.09004 * 111.42837 * 316.88267 * 23 17 16 48 48 H 1.08993 * 111.42915 * 81.82831 * 23 17 16 49 49 H 1.08005 * 120.05431 * 180.25384 * 24 14 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1993 0.4253 -0.0005 6 6 5.5694 0.6057 -0.0016 7 6 6.1006 1.8811 -0.0022 8 6 7.5951 2.0742 -0.0039 9 8 8.0214 2.4810 -1.3058 10 14 8.4290 0.4712 0.4498 11 1 8.0638 -0.5741 -0.5397 12 1 9.9018 0.6617 0.4487 13 1 7.9860 0.0485 1.8026 14 6 5.2588 2.9846 -0.0022 15 8 5.7819 4.2389 -0.0033 16 6 4.8564 5.3277 -0.0027 17 6 5.6252 6.6505 -0.0035 18 6 6.3815 6.8023 -1.3314 19 6 6.9507 8.2364 -1.4947 20 14 5.7071 9.2479 -0.4875 21 6 6.5412 10.1636 0.9042 22 6 4.7351 10.4091 -1.5726 23 6 4.6238 7.8338 0.1636 24 6 3.8842 2.8062 -0.0070 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.7865 -0.5726 0.0003 31 1 6.2261 -0.2518 -0.0012 32 1 7.8632 2.8415 0.7224 33 1 7.8151 1.8446 -2.0040 34 1 4.2286 5.2714 -0.8920 35 1 4.2305 5.2722 0.8879 36 1 6.3363 6.6579 0.8226 37 1 7.2032 6.0867 -1.3581 38 1 5.7006 6.5923 -2.1562 39 1 7.9516 8.3110 -1.0696 40 1 6.9485 8.5416 -2.5411 41 1 7.2886 10.8435 0.4950 42 1 5.7976 10.7339 1.4610 43 1 7.0254 9.4495 1.5702 44 1 4.1882 9.8353 -2.3207 45 1 4.0306 10.9735 -0.9616 46 1 5.4176 11.0979 -2.0706 47 1 3.7366 7.6949 -0.4543 48 1 4.3574 7.9854 1.2096 49 1 3.2275 3.6637 -0.0112 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_26952_18051908.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:38:48 Heat of formation + Delta-G solvation = -130.526484 kcal Electronic energy + Delta-G solvation = -25887.323995 eV Core-core repulsion = 22324.234649 eV Total energy + Delta-G solvation = -3563.089346 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.172 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.72843 -40.22731 -38.65611 -37.15767 -36.46612 -33.15896 -31.41784 -31.29827 -30.40802 -29.11022 -28.37479 -27.32309 -26.29271 -24.82433 -24.19979 -22.87937 -22.21219 -20.72799 -19.92109 -18.32536 -17.74721 -17.35778 -17.23850 -16.89018 -16.66137 -15.94374 -15.84714 -15.61771 -15.19229 -15.08994 -14.59898 -14.45719 -14.15628 -13.93468 -13.85370 -13.78587 -13.66592 -13.45529 -13.41322 -13.26308 -13.17341 -13.04333 -12.91247 -12.54971 -12.24603 -12.19296 -12.18407 -12.13086 -11.96045 -11.68990 -11.57257 -11.47215 -11.34828 -10.76396 -10.45709 -10.32286 -10.26815 -9.70515 -9.09457 0.16720 0.30396 1.18736 1.43318 1.53929 1.68547 1.91841 2.01070 2.01728 2.06306 2.28161 2.55198 2.64976 3.59571 3.63781 3.77535 3.84232 3.96655 4.00350 4.01589 4.04640 4.08169 4.20357 4.31326 4.33700 4.36182 4.42137 4.55792 4.58661 4.67369 4.70127 4.74513 4.82059 4.84163 4.85147 4.85760 4.86426 4.89563 5.00715 5.12569 5.15799 5.22350 5.23958 5.26135 5.36383 5.45506 5.51749 5.54755 5.60828 5.64912 6.24561 6.39978 6.77343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.045 3.955 3 O -0.331 6.331 4 C 0.165 3.835 5 C -0.244 4.244 6 C -0.050 4.050 7 C -0.202 4.202 8 C -0.069 4.069 9 O -0.552 6.552 10 Si 0.986 3.014 11 H -0.238 1.238 12 H -0.275 1.275 13 H -0.256 1.256 14 C 0.184 3.816 15 O -0.309 6.309 16 C 0.059 3.941 17 C -0.081 4.081 18 C -0.108 4.108 19 C -0.416 4.416 20 Si 1.043 2.957 21 C -0.455 4.455 22 C -0.454 4.454 23 C -0.401 4.401 24 C -0.259 4.259 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.105 0.895 33 H 0.384 0.616 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.049 0.951 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.086 0.914 48 H 0.088 0.912 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.735 -1.368 0.269 3.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.245 6.245 4 C 0.119 3.881 5 C -0.262 4.262 6 C -0.068 4.068 7 C -0.203 4.203 8 C -0.178 4.178 9 O -0.359 6.359 10 Si 0.809 3.191 11 H -0.162 1.162 12 H -0.200 1.200 13 H -0.180 1.180 14 C 0.137 3.863 15 O -0.222 6.222 16 C -0.015 4.015 17 C -0.099 4.099 18 C -0.146 4.146 19 C -0.500 4.500 20 Si 1.235 2.765 21 C -0.563 4.563 22 C -0.561 4.561 23 C -0.486 4.486 24 C -0.279 4.279 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.118 0.882 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.171 0.829 31 H 0.168 0.832 32 H 0.123 0.877 33 H 0.232 0.768 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.105 0.895 48 H 0.107 0.893 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.099 -1.384 0.818 2.644 hybrid contribution -0.609 -0.307 -0.418 0.800 sum -2.708 -1.691 0.399 3.218 Atomic orbital electron populations 1.21821 0.91779 1.04191 1.03118 1.23110 0.96678 0.80428 1.02710 1.86063 1.18712 1.31756 1.87968 1.18825 0.82797 0.93613 0.92885 1.21334 0.93764 0.98955 1.12171 1.20956 0.95283 0.95841 0.94691 1.19724 0.96616 0.91313 1.12658 1.24894 0.91987 1.12075 0.88853 1.86515 1.82216 1.50321 1.16820 0.85229 0.78288 0.74766 0.80803 1.16168 1.20012 1.17998 1.18581 0.90368 0.85094 0.92248 1.86176 1.36616 1.12007 1.87423 1.23202 0.91928 0.84556 1.01847 1.21676 0.97385 0.91880 0.98997 1.21680 0.99193 0.97384 0.96316 1.26745 1.09801 1.04398 1.09035 0.79398 0.65751 0.65440 0.65863 1.26169 1.07920 1.08497 1.13686 1.26149 1.09005 1.10894 1.10085 1.26959 1.04913 1.09636 1.07047 1.20559 0.94106 0.96940 1.16262 0.91970 0.91967 0.88238 0.90665 0.90675 0.82898 0.83197 0.87722 0.76761 0.91656 0.91320 0.90110 0.93187 0.92377 0.90959 0.90426 0.91068 0.90790 0.91310 0.91150 0.90815 0.91094 0.89524 0.89275 0.84329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.52 10.28 71.98 0.74 1.26 16 2 C 0.04 -0.07 5.46 71.98 0.39 0.33 16 3 O -0.33 -1.78 10.13 -92.39 -0.94 -2.72 16 4 C 0.16 0.98 6.68 22.49 0.15 1.13 16 5 C -0.24 -0.61 9.04 22.38 0.20 -0.40 16 6 C -0.05 -0.11 8.65 22.24 0.19 0.08 16 7 C -0.20 -1.07 5.27 -19.75 -0.10 -1.17 16 8 C -0.07 -0.27 2.37 71.24 0.17 -0.10 16 9 O -0.55 -2.94 12.88 -148.98 -1.92 -4.85 16 10 Si 0.99 0.47 25.49 68.60 1.75 2.22 16 11 H -0.24 0.48 6.73 99.48 0.67 1.15 16 12 H -0.27 -1.09 7.11 99.48 0.71 -0.38 16 13 H -0.26 -0.36 7.11 99.48 0.71 0.35 16 14 C 0.18 1.41 6.66 22.49 0.15 1.56 16 15 O -0.31 -2.48 9.24 -92.42 -0.85 -3.34 16 16 C 0.06 0.20 4.11 71.98 0.30 0.50 16 17 C -0.08 -0.10 2.40 -9.59 -0.02 -0.12 16 18 C -0.11 -0.32 5.21 31.52 0.16 -0.16 16 19 C -0.42 0.04 5.85 72.72 0.43 0.46 16 20 Si 1.04 -4.99 13.36 68.60 0.92 -4.07 16 21 C -0.46 1.36 8.65 113.37 0.98 2.34 16 22 C -0.45 1.54 8.65 113.37 0.98 2.52 16 23 C -0.40 1.18 5.29 72.99 0.39 1.57 16 24 C -0.26 -1.82 8.97 22.46 0.20 -1.62 16 25 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 26 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 27 H 0.10 -0.72 8.14 -2.39 -0.02 -0.74 16 28 H 0.08 -0.28 7.66 -2.39 -0.02 -0.30 16 29 H 0.08 -0.28 7.66 -2.39 -0.02 -0.30 16 30 H 0.15 -0.40 6.29 -2.91 -0.02 -0.42 16 31 H 0.15 -0.34 4.88 -2.91 -0.01 -0.36 16 32 H 0.10 0.53 7.83 -2.38 -0.02 0.52 16 33 H 0.38 -0.69 8.70 -74.06 -0.64 -1.34 16 34 H 0.07 0.17 7.58 -2.39 -0.02 0.16 16 35 H 0.07 0.13 7.67 -2.39 -0.02 0.12 16 36 H 0.08 0.14 8.13 -2.39 -0.02 0.12 16 37 H 0.05 0.37 8.12 -2.39 -0.02 0.35 16 38 H 0.06 0.18 8.04 -2.38 -0.02 0.16 16 39 H 0.07 0.05 8.04 -2.39 -0.02 0.03 16 40 H 0.08 -0.02 8.04 -2.39 -0.02 -0.04 16 41 H 0.07 -0.20 7.96 -2.38 -0.02 -0.21 16 42 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 43 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 44 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 45 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 46 H 0.07 -0.22 7.96 -2.38 -0.02 -0.24 16 47 H 0.09 -0.31 8.03 -2.38 -0.02 -0.33 16 48 H 0.09 -0.37 8.06 -2.39 -0.02 -0.39 16 49 H 0.14 0.76 6.30 -2.91 -0.02 0.75 16 Total: 0.00 -12.48 388.83 5.25 -7.23 By element: Atomic # 1 Polarization: -3.64 SS G_CDS: 0.99 Total: -2.65 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 5.30 Total: 8.18 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -3.71 Total: -10.91 kcal Atomic # 14 Polarization: -4.52 SS G_CDS: 2.66 Total: -1.86 kcal Total: -12.48 5.25 -7.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_26952_18051908.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.296 kcal (2) G-P(sol) polarization free energy of solvation -12.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds