Wall clock time and date at job start Fri Mar 5 2021 23:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46975 * 2 1 4 4 O 1.42905 * 109.47123 * 179.97438 * 3 2 1 5 5 C 1.35898 * 117.00188 * 179.97438 * 4 3 2 6 6 C 1.38750 * 120.02648 * 0.02562 * 5 4 3 7 7 C 1.38196 * 120.05647 * 180.02562 * 6 5 4 8 8 C 1.38162 * 120.10846 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.97364 * 179.97438 * 8 7 6 10 10 O 1.42901 * 109.47131 * 105.02335 * 9 8 7 11 11 Si 1.86294 * 109.47059 * 345.02297 * 9 8 7 12 12 H 1.48496 * 109.47342 * 60.00125 * 11 9 8 13 13 H 1.48505 * 109.46911 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47320 * 300.00004 * 11 9 8 15 15 C 1.38796 * 120.05156 * 0.02562 * 8 7 6 16 16 O 1.35900 * 120.02677 * 179.97438 * 15 8 7 17 17 C 1.42901 * 117.00200 * 179.97438 * 16 15 8 18 18 C 1.52995 * 109.47074 * 179.97438 * 17 16 15 19 19 C 1.53566 * 109.47643 * 293.54788 * 18 17 16 20 20 C 1.55147 * 111.29010 * 190.93802 * 19 18 17 21 21 Si 1.89333 * 101.34989 * 28.58791 * 20 19 18 22 22 C 1.86301 * 111.45813 * 114.13512 * 21 20 19 23 23 C 1.86297 * 111.45926 * 239.08100 * 21 20 19 24 24 C 1.56066 * 109.48114 * 173.43596 * 18 17 16 25 25 C 1.38612 * 119.94445 * 0.22767 * 15 8 7 26 26 H 1.09003 * 109.47207 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47253 * 300.00242 * 1 2 3 28 28 H 1.09006 * 109.46892 * 60.00394 * 1 2 3 29 29 H 1.08997 * 109.47253 * 239.99758 * 2 1 3 30 30 H 1.09006 * 109.46892 * 119.99606 * 2 1 3 31 31 H 1.09006 * 109.47490 * 59.99993 * 3 2 1 32 32 H 1.08993 * 109.47170 * 299.99746 * 3 2 1 33 33 H 1.07998 * 119.97305 * 0.02562 * 6 5 4 34 34 H 1.08002 * 119.94895 * 179.97438 * 7 6 5 35 35 H 1.08998 * 109.46789 * 225.02182 * 9 8 7 36 36 H 0.96696 * 113.99864 * 300.00244 * 10 9 8 37 37 H 1.09007 * 109.46885 * 60.00180 * 17 16 15 38 38 H 1.09005 * 109.47062 * 300.00380 * 17 16 15 39 39 H 1.09004 * 109.46872 * 53.55317 * 18 17 16 40 40 H 1.09003 * 109.12206 * 70.45930 * 19 18 17 41 41 H 1.08996 * 109.12221 * 311.42400 * 19 18 17 42 42 H 1.09002 * 111.04815 * 270.56954 * 20 19 18 43 43 H 1.08999 * 111.04827 * 146.61077 * 20 19 18 44 44 H 1.09002 * 109.47148 * 185.06678 * 22 21 20 45 45 H 1.09001 * 109.46900 * 65.06830 * 22 21 20 46 46 H 1.09004 * 109.47198 * 305.06808 * 22 21 20 47 47 H 1.08995 * 109.47233 * 294.93123 * 23 21 20 48 48 H 1.08997 * 109.47080 * 54.93469 * 23 21 20 49 49 H 1.08998 * 109.47258 * 174.93080 * 23 21 20 50 50 H 1.08996 * 111.41269 * 43.11689 * 24 18 17 51 51 H 1.09006 * 111.49251 * 278.12945 * 24 18 17 52 52 H 1.08011 * 120.05207 * 179.74490 * 25 15 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0860 2.6534 0.0001 6 6 3.3308 3.8174 -0.0003 7 6 3.9576 5.0490 -0.0013 8 6 5.3371 5.1247 -0.0013 9 6 6.0174 6.4693 -0.0030 10 8 6.5440 6.7384 1.2979 11 14 4.7838 7.7888 -0.4587 12 1 3.6773 7.7952 0.5316 13 1 5.4541 9.1140 -0.4598 14 1 4.2366 7.5092 -1.8106 15 6 6.0969 3.9631 -0.0009 16 8 7.4539 4.0381 -0.0014 17 6 8.1719 2.8026 -0.0003 18 6 9.6753 3.0865 -0.0017 19 6 10.0701 3.7482 -1.3301 20 6 11.6118 3.8067 -1.4939 21 14 12.1512 2.2975 -0.4860 22 6 12.9200 0.9927 -1.5710 23 6 13.2946 2.7793 0.9038 24 6 10.4581 1.7471 0.1677 25 6 5.4705 2.7266 -0.0052 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9564 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 2.2523 3.7609 0.0001 34 1 3.3681 5.9540 -0.0021 35 1 6.8296 6.4646 -0.7299 36 1 5.8757 6.7576 1.9964 37 1 7.9099 2.2293 -0.8896 38 1 7.9105 2.2312 0.8904 39 1 9.9196 3.7550 0.8239 40 1 9.6694 4.7615 -1.3573 41 1 9.6449 3.1757 -2.1544 42 1 12.0160 4.7258 -1.0695 43 1 11.8986 3.7016 -2.5402 44 1 13.1356 0.1056 -0.9753 45 1 13.8458 1.3761 -1.9999 46 1 12.2284 0.7329 -2.3724 47 1 14.2227 3.1739 0.4904 48 1 12.8174 3.5421 1.5189 49 1 13.5125 1.9036 1.5151 50 1 10.0313 0.9560 -0.4489 51 1 10.5138 1.4466 1.2140 52 1 6.0601 1.8216 -0.0090 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_26953_18051908.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:50:10 Heat of formation + Delta-G solvation = -136.089701 kcal Electronic energy + Delta-G solvation = -27626.971295 eV Core-core repulsion = 23908.103090 eV Total energy + Delta-G solvation = -3718.868204 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.187 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.73952 -40.26644 -38.67747 -37.19140 -36.49359 -34.86550 -32.04940 -31.32792 -30.40822 -29.11369 -28.37875 -27.79964 -27.23394 -26.07884 -24.34354 -23.53698 -22.59649 -22.05551 -20.71628 -19.88889 -18.35443 -17.71242 -17.37888 -17.34386 -16.99738 -16.63152 -16.03682 -15.97834 -15.59587 -15.19333 -15.09762 -15.08228 -14.76945 -14.34795 -13.98810 -13.87584 -13.84389 -13.78216 -13.56300 -13.48111 -13.36581 -13.22918 -13.15482 -12.93053 -12.70473 -12.58821 -12.42334 -12.23135 -12.17863 -12.07434 -11.99071 -11.85811 -11.64238 -11.56541 -11.46313 -11.34712 -10.76705 -10.45907 -10.32832 -10.27406 -9.70917 -9.09965 0.16293 0.29982 1.18331 1.42863 1.53640 1.68592 1.91532 1.98928 2.00724 2.04906 2.26517 2.54783 2.64595 3.59419 3.62471 3.77117 3.82724 3.90109 3.90751 3.96221 4.02583 4.07165 4.15225 4.23266 4.28162 4.34973 4.41380 4.50705 4.54221 4.55330 4.60954 4.66765 4.70169 4.75348 4.77913 4.81629 4.84142 4.85480 4.86178 5.00743 5.09076 5.11557 5.13444 5.21207 5.21939 5.23967 5.30809 5.34550 5.45449 5.51321 5.54207 5.60439 5.64593 6.23730 6.39434 6.77400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.051 3.949 4 O -0.329 6.329 5 C 0.165 3.835 6 C -0.244 4.244 7 C -0.050 4.050 8 C -0.202 4.202 9 C -0.068 4.068 10 O -0.552 6.552 11 Si 0.985 3.015 12 H -0.238 1.238 13 H -0.275 1.275 14 H -0.256 1.256 15 C 0.184 3.816 16 O -0.309 6.309 17 C 0.059 3.941 18 C -0.081 4.081 19 C -0.110 4.110 20 C -0.415 4.415 21 Si 1.042 2.958 22 C -0.453 4.453 23 C -0.457 4.457 24 C -0.402 4.402 25 C -0.259 4.259 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.104 0.896 36 H 0.384 0.616 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.051 0.949 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.066 0.934 49 H 0.072 0.928 50 H 0.087 0.913 51 H 0.087 0.913 52 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.288 -2.107 -0.003 3.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.023 4.023 4 O -0.243 6.243 5 C 0.119 3.881 6 C -0.262 4.262 7 C -0.067 4.067 8 C -0.203 4.203 9 C -0.178 4.178 10 O -0.359 6.359 11 Si 0.808 3.192 12 H -0.161 1.161 13 H -0.200 1.200 14 H -0.180 1.180 15 C 0.137 3.863 16 O -0.222 6.222 17 C -0.015 4.015 18 C -0.100 4.100 19 C -0.147 4.147 20 C -0.499 4.499 21 Si 1.235 2.765 22 C -0.561 4.561 23 C -0.564 4.564 24 C -0.486 4.486 25 C -0.278 4.278 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.170 0.830 34 H 0.168 0.832 35 H 0.122 0.878 36 H 0.233 0.767 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.090 0.910 48 H 0.086 0.914 49 H 0.092 0.908 50 H 0.106 0.894 51 H 0.106 0.894 52 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.091 -1.501 -0.550 2.632 hybrid contribution -0.449 -0.484 0.348 0.746 sum -2.540 -1.985 -0.202 3.230 Atomic orbital electron populations 1.21689 0.92961 1.03142 1.02770 1.21500 0.97040 0.94083 1.03394 1.23169 0.76586 0.99875 1.02673 1.86041 1.23283 1.26999 1.87986 1.18817 0.91566 0.84765 0.92924 1.21324 1.01310 0.91398 1.12195 1.20954 0.92596 0.98510 0.94683 1.19724 0.93256 0.94662 1.12647 1.24887 1.05984 0.98032 0.88888 1.86512 1.38875 1.93637 1.16876 0.85242 0.76866 0.76253 0.80821 1.16099 1.19979 1.18017 1.18578 0.82975 0.92477 0.92228 1.86176 1.14565 1.34054 1.87415 1.23199 0.92096 0.84366 1.01854 1.21698 0.91210 0.98043 0.99032 1.21703 0.96253 1.00449 0.96324 1.26720 0.98859 1.15233 1.09103 0.79408 0.65472 0.65810 0.65852 1.26141 1.07342 1.12540 1.10063 1.26185 1.10766 1.05685 1.13761 1.26983 1.17075 0.97541 1.06981 1.20557 0.93200 0.97814 1.16225 0.91286 0.91793 0.91817 0.91226 0.91216 0.90728 0.90751 0.82991 0.83195 0.87765 0.76710 0.91412 0.91546 0.90355 0.93043 0.92020 0.90918 0.90224 0.90849 0.91080 0.91091 0.91038 0.91432 0.90844 0.89437 0.89446 0.84288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.71 9.91 71.98 0.71 1.42 16 2 C -0.12 0.25 6.30 30.59 0.19 0.44 16 3 C 0.05 -0.04 4.74 71.98 0.34 0.30 16 4 O -0.33 -1.81 10.14 -92.40 -0.94 -2.74 16 5 C 0.17 0.99 6.68 22.49 0.15 1.14 16 6 C -0.24 -0.63 9.04 22.38 0.20 -0.43 16 7 C -0.05 -0.12 8.65 22.24 0.19 0.08 16 8 C -0.20 -1.07 5.27 -19.75 -0.10 -1.17 16 9 C -0.07 -0.27 2.37 71.23 0.17 -0.10 16 10 O -0.55 -2.89 12.88 -148.98 -1.92 -4.81 16 11 Si 0.99 0.53 25.49 68.60 1.75 2.28 16 12 H -0.24 0.48 6.73 99.48 0.67 1.15 16 13 H -0.27 -1.10 7.11 99.48 0.71 -0.39 16 14 H -0.26 -0.39 7.11 99.48 0.71 0.32 16 15 C 0.18 1.41 6.66 22.49 0.15 1.56 16 16 O -0.31 -2.47 9.24 -92.42 -0.85 -3.32 16 17 C 0.06 0.20 4.11 71.98 0.30 0.50 16 18 C -0.08 -0.10 2.40 -9.54 -0.02 -0.13 16 19 C -0.11 -0.23 5.21 31.52 0.16 -0.06 16 20 C -0.41 0.30 5.85 72.72 0.43 0.72 16 21 Si 1.04 -5.04 13.35 68.60 0.92 -4.12 16 22 C -0.45 1.61 8.65 113.37 0.98 2.59 16 23 C -0.46 1.22 8.65 113.37 0.98 2.20 16 24 C -0.40 1.14 5.30 73.05 0.39 1.53 16 25 C -0.26 -1.80 8.97 22.46 0.20 -1.60 16 26 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 27 H 0.06 -0.35 8.14 -2.39 -0.02 -0.37 16 28 H 0.06 -0.35 8.14 -2.38 -0.02 -0.37 16 29 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.07 -0.08 8.14 -2.38 -0.02 -0.10 16 31 H 0.07 -0.22 7.66 -2.38 -0.02 -0.24 16 32 H 0.07 -0.21 7.66 -2.39 -0.02 -0.23 16 33 H 0.15 -0.35 6.29 -2.91 -0.02 -0.37 16 34 H 0.15 -0.34 4.88 -2.91 -0.01 -0.35 16 35 H 0.10 0.55 7.82 -2.39 -0.02 0.53 16 36 H 0.38 -0.77 8.70 -74.06 -0.64 -1.42 16 37 H 0.07 0.14 7.58 -2.38 -0.02 0.12 16 38 H 0.07 0.17 7.67 -2.38 -0.02 0.15 16 39 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.05 0.28 8.12 -2.39 -0.02 0.26 16 41 H 0.06 0.10 8.04 -2.39 -0.02 0.08 16 42 H 0.07 0.01 8.04 -2.39 -0.02 -0.01 16 43 H 0.08 -0.09 8.04 -2.39 -0.02 -0.11 16 44 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 45 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 46 H 0.07 -0.23 7.96 -2.38 -0.02 -0.24 16 47 H 0.07 -0.19 7.96 -2.39 -0.02 -0.20 16 48 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 49 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 50 H 0.09 -0.33 8.03 -2.39 -0.02 -0.34 16 51 H 0.09 -0.32 8.06 -2.38 -0.02 -0.34 16 52 H 0.14 0.75 6.30 -2.90 -0.02 0.73 16 Total: 0.00 -12.00 410.33 5.33 -6.68 By element: Atomic # 1 Polarization: -3.90 SS G_CDS: 0.95 Total: -2.95 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 5.42 Total: 8.99 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -3.71 Total: -10.87 kcal Atomic # 14 Polarization: -4.51 SS G_CDS: 2.66 Total: -1.85 kcal Total: -12.00 5.33 -6.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_26953_18051908.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.414 kcal (2) G-P(sol) polarization free energy of solvation -12.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds