Wall clock time and date at job start Sat Mar 6 2021 00:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34748 * 116.99997 * 2 1 4 4 O 1.21497 * 120.00228 * 359.97438 * 3 2 1 5 5 C 1.47467 * 119.99631 * 180.02562 * 3 2 1 6 6 C 1.39779 * 120.09449 * 359.97438 * 5 3 2 7 7 C 1.37700 * 119.90374 * 179.74821 * 6 5 3 8 8 C 1.38987 * 120.09234 * 0.54961 * 7 6 5 9 9 O 1.35705 * 119.90492 * 179.72423 * 8 7 6 10 10 C 1.42901 * 117.00091 * 359.72320 * 9 8 7 11 11 C 1.52995 * 109.47074 * 179.97438 * 10 9 8 12 12 C 1.53566 * 109.47643 * 293.54788 * 11 10 9 13 13 C 1.55147 * 111.29010 * 190.93802 * 12 11 10 14 14 Si 1.89333 * 101.34989 * 28.58791 * 13 12 11 15 15 C 1.86301 * 111.45813 * 114.13512 * 14 13 12 16 16 C 1.86297 * 111.45926 * 239.08100 * 14 13 12 17 17 C 1.56066 * 109.48114 * 173.43596 * 11 10 9 18 18 C 1.39033 * 120.18883 * 359.44778 * 8 7 6 19 19 C 1.50705 * 119.95530 * 180.25121 * 18 8 7 20 20 O 1.42900 * 109.47090 * 285.00450 * 19 18 8 21 21 Si 1.86297 * 109.47121 * 164.99834 * 19 18 8 22 22 H 1.48503 * 109.46852 * 60.00258 * 21 19 18 23 23 H 1.48502 * 109.47087 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47556 * 300.00305 * 21 19 18 25 25 C 1.37661 * 120.09195 * 0.27724 * 18 8 7 26 26 H 1.09007 * 109.47400 * 300.00109 * 1 2 3 27 27 H 1.09009 * 109.47192 * 60.00078 * 1 2 3 28 28 H 1.09004 * 109.47473 * 179.97438 * 1 2 3 29 29 H 1.08007 * 120.04417 * 0.02562 * 6 5 3 30 30 H 1.08001 * 119.94843 * 180.29051 * 7 6 5 31 31 H 1.09007 * 109.46885 * 60.00237 * 10 9 8 32 32 H 1.09005 * 109.47062 * 300.00437 * 10 9 8 33 33 H 1.09004 * 109.46872 * 53.55317 * 11 10 9 34 34 H 1.09003 * 109.12206 * 70.45930 * 12 11 10 35 35 H 1.08996 * 109.12221 * 311.42400 * 12 11 10 36 36 H 1.09002 * 111.04815 * 270.56954 * 13 12 11 37 37 H 1.08999 * 111.04827 * 146.61077 * 13 12 11 38 38 H 1.09002 * 109.47148 * 185.06678 * 15 14 13 39 39 H 1.09001 * 109.46900 * 65.06830 * 15 14 13 40 40 H 1.09004 * 109.47198 * 305.06808 * 15 14 13 41 41 H 1.08995 * 109.47233 * 294.93123 * 16 14 13 42 42 H 1.08997 * 109.47080 * 54.93469 * 16 14 13 43 43 H 1.08998 * 109.47258 * 174.93080 * 16 14 13 44 44 H 1.08996 * 111.41269 * 43.11689 * 17 11 10 45 45 H 1.09006 * 111.49251 * 278.12945 * 17 11 10 46 46 H 1.08998 * 109.46540 * 45.00162 * 19 18 8 47 47 H 0.96698 * 114.00357 * 59.99281 * 20 19 18 48 48 H 1.08003 * 120.04639 * 179.97438 * 25 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4021 2.2196 -0.0005 5 6 3.5364 1.2777 -0.0006 6 6 4.2995 0.1066 -0.0006 7 6 5.6744 0.1832 -0.0064 8 6 6.3034 1.4226 -0.0006 9 8 7.6586 1.4935 -0.0007 10 6 8.3730 0.2560 -0.0007 11 6 9.8772 0.5355 -0.0014 12 6 10.2744 1.1974 -1.3290 13 6 11.8163 1.2516 -1.4923 14 14 12.3510 -0.2602 -0.4857 15 6 13.1163 -1.5661 -1.5718 16 6 13.4953 0.2169 0.9048 17 6 10.6561 -0.8064 0.1669 18 6 5.5481 2.5899 -0.0007 19 6 6.2356 3.9310 -0.0002 20 8 6.7629 4.1955 1.3014 21 14 5.0093 5.2576 -0.4550 22 1 3.9022 5.2685 0.5347 23 1 5.6869 6.5790 -0.4551 24 1 4.4614 4.9827 -1.8075 25 6 4.1732 2.5223 -0.0006 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 3.8115 -0.8569 -0.0006 30 1 6.2647 -0.7212 -0.0111 31 1 8.1097 -0.3156 -0.8907 32 1 8.1097 -0.3156 0.8894 33 1 10.1232 1.2024 0.8250 34 1 9.8766 2.2119 -1.3552 35 1 9.8477 0.6270 -2.1540 36 1 12.2230 2.1691 -1.0668 37 1 12.1030 1.1468 -2.5386 38 1 13.3292 -2.4544 -0.9770 39 1 14.0433 -1.1849 -2.0002 40 1 12.4242 -1.8231 -2.3738 41 1 14.4247 0.6093 0.4921 42 1 13.0202 0.9805 1.5206 43 1 13.7106 -0.6601 1.5153 44 1 10.2272 -1.5956 -0.4506 45 1 10.7106 -1.1081 1.2129 46 1 7.0482 3.9228 -0.7266 47 1 7.4095 3.5432 1.6039 48 1 3.5872 3.4296 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_7_2787264_18051908.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:02:02 Heat of formation + Delta-G solvation = -183.981298 kcal Electronic energy + Delta-G solvation = -27352.858743 eV Core-core repulsion = 23496.080708 eV Total energy + Delta-G solvation = -3856.778034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.88058 -41.05091 -39.07189 -37.52281 -37.26762 -36.74392 -33.01231 -31.77292 -30.75359 -29.33006 -28.71743 -28.59619 -27.53892 -26.69125 -24.76240 -24.31944 -22.96007 -21.68290 -20.86366 -19.48482 -18.89529 -18.11015 -17.91950 -17.31939 -17.21560 -17.07826 -16.34482 -15.99632 -15.68005 -15.52438 -15.20862 -14.91441 -14.64971 -14.40578 -14.26861 -14.16880 -14.05606 -14.01647 -13.72459 -13.66415 -13.60208 -13.39810 -13.27564 -13.09330 -12.84181 -12.73714 -12.41444 -12.26397 -12.12700 -11.79568 -11.74091 -11.71500 -11.55685 -11.52906 -11.19081 -10.98843 -10.98303 -10.69158 -10.46221 -10.18925 -9.43887 -0.35697 0.07877 1.26001 1.44530 1.48822 1.61043 1.64444 1.71011 1.74919 1.77460 1.96200 2.06126 2.43437 2.58224 3.42413 3.55253 3.63505 3.71977 3.78716 3.88872 3.92902 3.95969 4.07205 4.18199 4.20723 4.26410 4.28555 4.37219 4.41945 4.49237 4.50789 4.57079 4.59600 4.60563 4.63447 4.64775 4.65138 4.72591 4.92883 4.96273 5.02305 5.03305 5.12348 5.21795 5.28186 5.33610 5.39502 5.40110 5.43209 5.43533 6.12965 6.62765 6.78100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.511 3.489 4 O -0.506 6.506 5 C -0.163 4.163 6 C -0.013 4.013 7 C -0.221 4.221 8 C 0.184 3.816 9 O -0.307 6.307 10 C 0.062 3.938 11 C -0.083 4.083 12 C -0.110 4.110 13 C -0.399 4.399 14 Si 0.970 3.030 15 C -0.443 4.443 16 C -0.443 4.443 17 C -0.394 4.394 18 C -0.159 4.159 19 C -0.078 4.078 20 O -0.536 6.536 21 Si 1.003 2.997 22 H -0.248 1.248 23 H -0.252 1.252 24 H -0.246 1.246 25 C -0.019 4.019 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.145 0.855 30 H 0.141 0.859 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.369 0.631 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.702 -5.071 -0.915 6.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.357 3.643 4 O -0.395 6.395 5 C -0.164 4.164 6 C -0.032 4.032 7 C -0.240 4.240 8 C 0.137 3.863 9 O -0.219 6.219 10 C -0.012 4.012 11 C -0.101 4.101 12 C -0.148 4.148 13 C -0.485 4.485 14 Si 1.168 2.832 15 C -0.551 4.551 16 C -0.551 4.551 17 C -0.479 4.479 18 C -0.160 4.160 19 C -0.186 4.186 20 O -0.341 6.341 21 Si 0.822 3.178 22 H -0.171 1.171 23 H -0.176 1.176 24 H -0.169 1.169 25 C -0.037 4.037 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.123 0.877 29 H 0.163 0.837 30 H 0.159 0.841 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.098 0.902 47 H 0.216 0.784 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.663 -3.493 -1.171 4.546 hybrid contribution 0.324 -1.273 0.185 1.326 sum 2.987 -4.766 -0.985 5.710 Atomic orbital electron populations 1.23333 0.75462 1.04026 1.02892 1.86524 1.23950 1.32429 1.84364 1.21011 0.88898 0.81617 0.72798 1.90864 1.66748 1.35982 1.45880 1.18874 0.89351 0.94453 1.13726 1.21302 0.92913 0.98200 0.90745 1.21287 0.95613 0.96924 1.10139 1.19101 0.82840 0.93205 0.91182 1.86030 1.14729 1.34162 1.86988 1.23164 0.91788 0.84238 1.02016 1.21717 0.91328 0.97456 0.99625 1.21720 0.95600 1.01406 0.96030 1.26510 0.99457 1.14066 1.08515 0.80470 0.67128 0.67941 0.67659 1.26024 1.07224 1.12102 1.09791 1.26024 1.10409 1.05596 1.13120 1.26834 1.16564 0.98109 1.06436 1.19548 0.92621 0.94738 1.09132 1.25151 1.04459 1.00070 0.88960 1.86705 1.62368 1.53290 1.31726 0.84619 0.76643 0.76442 0.80105 1.17130 1.17555 1.16936 1.21054 0.92944 0.97611 0.92067 0.91611 0.91625 0.87736 0.83740 0.84115 0.91381 0.91285 0.89589 0.91233 0.91987 0.90436 0.90311 0.91129 0.91086 0.91062 0.91032 0.91006 0.91145 0.89907 0.89879 0.90160 0.78357 0.83703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.01 10.57 101.05 1.07 1.06 16 2 O -0.36 -0.77 9.81 -40.62 -0.40 -1.16 16 3 C 0.51 2.01 7.89 34.49 0.27 2.28 16 4 O -0.51 -3.31 16.13 -19.26 -0.31 -3.62 16 5 C -0.16 -0.42 5.87 -104.98 -0.62 -1.04 16 6 C -0.01 0.00 9.61 -39.20 -0.38 -0.38 16 7 C -0.22 0.09 9.01 -39.50 -0.36 -0.27 16 8 C 0.18 0.12 6.63 -39.01 -0.26 -0.14 16 9 O -0.31 0.11 8.79 -18.82 -0.17 -0.05 16 10 C 0.06 -0.14 4.10 37.15 0.15 0.01 16 11 C -0.08 0.21 2.40 -88.69 -0.21 0.00 16 12 C -0.11 0.20 5.21 -25.30 -0.13 0.07 16 13 C -0.40 0.94 5.85 38.29 0.22 1.17 16 14 Si 0.97 -3.77 13.35 -169.99 -2.27 -6.04 16 15 C -0.44 1.17 8.65 101.05 0.87 2.04 16 16 C -0.44 1.14 8.65 101.05 0.87 2.02 16 17 C -0.39 1.40 5.30 38.80 0.21 1.60 16 18 C -0.16 -0.29 5.27 -104.54 -0.55 -0.84 16 19 C -0.08 -0.11 2.33 36.01 0.08 -0.02 16 20 O -0.54 -1.09 12.65 -35.23 -0.45 -1.54 16 21 Si 1.00 1.87 25.74 -169.99 -4.38 -2.51 16 22 H -0.25 -0.76 6.73 56.52 0.38 -0.38 16 23 H -0.25 -0.62 7.11 56.52 0.40 -0.21 16 24 H -0.25 -0.40 7.11 56.52 0.40 0.00 16 25 C -0.02 -0.05 8.20 -39.21 -0.32 -0.38 16 26 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 27 H 0.06 -0.01 8.14 -51.92 -0.42 -0.43 16 28 H 0.10 -0.30 8.14 -51.93 -0.42 -0.72 16 29 H 0.14 -0.21 7.60 -52.48 -0.40 -0.61 16 30 H 0.14 -0.38 6.27 -52.49 -0.33 -0.71 16 31 H 0.07 -0.19 7.57 -51.93 -0.39 -0.59 16 32 H 0.07 -0.20 7.66 -51.93 -0.40 -0.60 16 33 H 0.09 -0.22 8.14 -51.93 -0.42 -0.64 16 34 H 0.07 -0.05 8.12 -51.93 -0.42 -0.48 16 35 H 0.06 -0.11 8.04 -51.93 -0.42 -0.53 16 36 H 0.08 -0.16 8.04 -51.93 -0.42 -0.58 16 37 H 0.08 -0.17 8.04 -51.93 -0.42 -0.59 16 38 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 39 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 40 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 41 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 42 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 43 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 44 H 0.08 -0.31 8.03 -51.93 -0.42 -0.73 16 45 H 0.08 -0.31 8.06 -51.93 -0.42 -0.73 16 46 H 0.08 0.01 7.82 -51.93 -0.41 -0.40 16 47 H 0.37 -0.14 8.60 45.56 0.39 0.25 16 48 H 0.15 0.47 4.46 -52.48 -0.23 0.24 16 LS Contribution 391.61 15.07 5.90 5.90 Total: 0.00 -5.81 391.61 -8.40 -14.21 By element: Atomic # 1 Polarization: -5.11 SS G_CDS: -7.27 Total: -12.37 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 0.93 Total: 7.19 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -1.32 Total: -6.38 kcal Atomic # 14 Polarization: -1.90 SS G_CDS: -6.65 Total: -8.55 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -5.81 -8.40 -14.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_2787264_18051908.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.774 kcal (2) G-P(sol) polarization free energy of solvation -5.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds