Wall clock time and date at job start Sat Mar 6 2021 00:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34748 * 116.99997 * 2 1 4 4 O 1.21497 * 120.00228 * 359.97438 * 3 2 1 5 5 C 1.47467 * 119.99631 * 180.02562 * 3 2 1 6 6 C 1.39779 * 120.09449 * 359.97438 * 5 3 2 7 7 C 1.37700 * 119.90374 * 179.74821 * 6 5 3 8 8 C 1.38987 * 120.09234 * 0.54961 * 7 6 5 9 9 O 1.35705 * 119.90492 * 179.72423 * 8 7 6 10 10 C 1.42901 * 117.00091 * 359.72320 * 9 8 7 11 11 C 1.52995 * 109.47074 * 179.97438 * 10 9 8 12 12 C 1.53566 * 109.47643 * 293.54788 * 11 10 9 13 13 C 1.55147 * 111.29010 * 190.93802 * 12 11 10 14 14 Si 1.89333 * 101.34989 * 28.58791 * 13 12 11 15 15 C 1.86301 * 111.45813 * 114.13512 * 14 13 12 16 16 C 1.86297 * 111.45926 * 239.08100 * 14 13 12 17 17 C 1.56066 * 109.48114 * 173.43596 * 11 10 9 18 18 C 1.39033 * 120.18883 * 359.44778 * 8 7 6 19 19 C 1.50705 * 119.95530 * 180.25121 * 18 8 7 20 20 O 1.42900 * 109.47090 * 285.00450 * 19 18 8 21 21 Si 1.86297 * 109.47121 * 164.99834 * 19 18 8 22 22 H 1.48503 * 109.46852 * 60.00258 * 21 19 18 23 23 H 1.48502 * 109.47087 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47556 * 300.00305 * 21 19 18 25 25 C 1.37661 * 120.09195 * 0.27724 * 18 8 7 26 26 H 1.09007 * 109.47400 * 300.00109 * 1 2 3 27 27 H 1.09009 * 109.47192 * 60.00078 * 1 2 3 28 28 H 1.09004 * 109.47473 * 179.97438 * 1 2 3 29 29 H 1.08007 * 120.04417 * 0.02562 * 6 5 3 30 30 H 1.08001 * 119.94843 * 180.29051 * 7 6 5 31 31 H 1.09007 * 109.46885 * 60.00237 * 10 9 8 32 32 H 1.09005 * 109.47062 * 300.00437 * 10 9 8 33 33 H 1.09004 * 109.46872 * 53.55317 * 11 10 9 34 34 H 1.09003 * 109.12206 * 70.45930 * 12 11 10 35 35 H 1.08996 * 109.12221 * 311.42400 * 12 11 10 36 36 H 1.09002 * 111.04815 * 270.56954 * 13 12 11 37 37 H 1.08999 * 111.04827 * 146.61077 * 13 12 11 38 38 H 1.09002 * 109.47148 * 185.06678 * 15 14 13 39 39 H 1.09001 * 109.46900 * 65.06830 * 15 14 13 40 40 H 1.09004 * 109.47198 * 305.06808 * 15 14 13 41 41 H 1.08995 * 109.47233 * 294.93123 * 16 14 13 42 42 H 1.08997 * 109.47080 * 54.93469 * 16 14 13 43 43 H 1.08998 * 109.47258 * 174.93080 * 16 14 13 44 44 H 1.08996 * 111.41269 * 43.11689 * 17 11 10 45 45 H 1.09006 * 111.49251 * 278.12945 * 17 11 10 46 46 H 1.08998 * 109.46540 * 45.00162 * 19 18 8 47 47 H 0.96698 * 114.00357 * 59.99281 * 20 19 18 48 48 H 1.08003 * 120.04639 * 179.97438 * 25 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4021 2.2196 -0.0005 5 6 3.5364 1.2777 -0.0006 6 6 4.2995 0.1066 -0.0006 7 6 5.6744 0.1832 -0.0064 8 6 6.3034 1.4226 -0.0006 9 8 7.6586 1.4935 -0.0007 10 6 8.3730 0.2560 -0.0007 11 6 9.8772 0.5355 -0.0014 12 6 10.2744 1.1974 -1.3290 13 6 11.8163 1.2516 -1.4923 14 14 12.3510 -0.2602 -0.4857 15 6 13.1163 -1.5661 -1.5718 16 6 13.4953 0.2169 0.9048 17 6 10.6561 -0.8064 0.1669 18 6 5.5481 2.5899 -0.0007 19 6 6.2356 3.9310 -0.0002 20 8 6.7629 4.1955 1.3014 21 14 5.0093 5.2576 -0.4550 22 1 3.9022 5.2685 0.5347 23 1 5.6869 6.5790 -0.4551 24 1 4.4614 4.9827 -1.8075 25 6 4.1732 2.5223 -0.0006 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 3.8115 -0.8569 -0.0006 30 1 6.2647 -0.7212 -0.0111 31 1 8.1097 -0.3156 -0.8907 32 1 8.1097 -0.3156 0.8894 33 1 10.1232 1.2024 0.8250 34 1 9.8766 2.2119 -1.3552 35 1 9.8477 0.6270 -2.1540 36 1 12.2230 2.1691 -1.0668 37 1 12.1030 1.1468 -2.5386 38 1 13.3292 -2.4544 -0.9770 39 1 14.0433 -1.1849 -2.0002 40 1 12.4242 -1.8231 -2.3738 41 1 14.4247 0.6093 0.4921 42 1 13.0202 0.9805 1.5206 43 1 13.7106 -0.6601 1.5153 44 1 10.2272 -1.5956 -0.4506 45 1 10.7106 -1.1081 1.2129 46 1 7.0482 3.9228 -0.7266 47 1 7.4095 3.5432 1.6039 48 1 3.5872 3.4296 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_2787264_18051908.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:02:02 Heat of formation + Delta-G solvation = -175.293689 kcal Electronic energy + Delta-G solvation = -27352.482020 eV Core-core repulsion = 23496.080708 eV Total energy + Delta-G solvation = -3856.401311 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.96498 -41.17187 -39.05113 -37.67317 -37.44711 -36.59574 -33.07270 -31.81446 -30.56635 -29.09300 -28.73435 -28.35730 -27.36038 -26.75469 -24.79389 -24.20099 -22.94540 -21.82392 -20.65350 -19.49374 -19.00698 -18.24717 -18.03904 -17.48290 -17.19967 -17.04512 -16.40528 -15.88986 -15.63153 -15.58755 -15.21720 -14.93309 -14.63533 -14.41128 -14.33885 -14.11048 -13.81806 -13.79896 -13.71852 -13.51451 -13.41737 -13.23097 -13.14651 -13.08041 -12.82682 -12.58760 -12.34895 -12.21382 -12.10148 -11.94293 -11.89428 -11.82216 -11.60821 -11.35169 -11.24132 -11.09847 -10.74169 -10.42324 -10.24077 -10.23412 -9.47392 -0.46753 0.03164 1.10901 1.31076 1.41940 1.44647 1.59062 1.72112 1.86984 2.02082 2.03971 2.09774 2.49625 2.67761 3.39657 3.57451 3.61108 3.81108 3.86724 3.89708 4.03165 4.08728 4.11270 4.19915 4.25889 4.28572 4.43599 4.46636 4.60010 4.60809 4.62949 4.70717 4.76114 4.78934 4.82735 4.85989 4.86909 4.87601 4.92044 5.02988 5.07546 5.18107 5.22909 5.26757 5.37872 5.40269 5.53712 5.57843 5.63430 5.66606 6.19789 6.56033 6.63630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.510 3.490 4 O -0.544 6.544 5 C -0.183 4.183 6 C -0.005 4.005 7 C -0.214 4.214 8 C 0.188 3.812 9 O -0.310 6.310 10 C 0.054 3.946 11 C -0.083 4.083 12 C -0.112 4.112 13 C -0.417 4.417 14 Si 1.039 2.961 15 C -0.458 4.458 16 C -0.460 4.460 17 C -0.395 4.395 18 C -0.169 4.169 19 C -0.072 4.072 20 O -0.549 6.549 21 Si 1.014 2.986 22 H -0.273 1.273 23 H -0.260 1.260 24 H -0.245 1.245 25 C -0.035 4.035 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.136 0.864 29 H 0.165 0.835 30 H 0.171 0.829 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.379 0.621 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.656 -7.324 -0.817 8.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.358 3.642 4 O -0.437 6.437 5 C -0.184 4.184 6 C -0.023 4.023 7 C -0.233 4.233 8 C 0.141 3.859 9 O -0.222 6.222 10 C -0.020 4.020 11 C -0.101 4.101 12 C -0.150 4.150 13 C -0.501 4.501 14 Si 1.232 2.768 15 C -0.565 4.565 16 C -0.567 4.567 17 C -0.480 4.480 18 C -0.170 4.170 19 C -0.181 4.181 20 O -0.356 6.356 21 Si 0.837 3.163 22 H -0.198 1.198 23 H -0.184 1.184 24 H -0.168 1.168 25 C -0.053 4.053 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.154 0.846 29 H 0.183 0.817 30 H 0.188 0.812 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.113 0.887 47 H 0.229 0.771 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.639 -5.753 -1.088 6.894 hybrid contribution 0.076 -0.586 0.152 0.610 sum 3.716 -6.339 -0.936 7.407 Atomic orbital electron populations 1.23594 0.74273 1.05977 1.02566 1.86518 1.25164 1.31398 1.83863 1.21346 0.89519 0.81545 0.71802 1.90838 1.67634 1.37200 1.47979 1.18938 0.88808 0.95259 1.15395 1.21523 0.93225 0.98081 0.89454 1.21586 0.95411 0.97516 1.08752 1.19138 0.83338 0.93136 0.90336 1.86043 1.14140 1.35497 1.86563 1.23405 0.91594 0.83719 1.03247 1.21717 0.91389 0.98016 0.98990 1.21741 0.95784 1.00729 0.96706 1.26717 0.99453 1.15148 1.08825 0.79411 0.66066 0.65687 0.65593 1.26213 1.07248 1.12826 1.10259 1.26236 1.10799 1.05647 1.14010 1.26873 1.16213 0.97736 1.07202 1.19537 0.92279 0.95416 1.09803 1.25001 1.04472 0.99527 0.89107 1.86674 1.62847 1.53989 1.32066 0.84450 0.75968 0.76434 0.79471 1.19814 1.18435 1.16816 1.21035 0.93543 0.97477 0.93262 0.92044 0.91960 0.84591 0.81737 0.81196 0.90236 0.89863 0.89679 0.92697 0.91861 0.91055 0.90670 0.90998 0.91565 0.91046 0.91524 0.91212 0.91011 0.88992 0.89056 0.88697 0.77131 0.85200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.57 113.37 1.20 1.19 16 2 O -0.35 -1.58 9.81 -56.58 -0.55 -2.14 16 3 C 0.51 4.70 7.89 70.25 0.55 5.25 16 4 O -0.54 -8.48 16.13 19.85 0.32 -8.16 16 5 C -0.18 -1.08 5.87 -20.09 -0.12 -1.20 16 6 C 0.00 0.00 9.61 22.52 0.22 0.22 16 7 C -0.21 0.60 9.01 22.32 0.20 0.80 16 8 C 0.19 0.05 6.63 22.64 0.15 0.20 16 9 O -0.31 0.65 8.79 -90.25 -0.79 -0.14 16 10 C 0.05 -0.36 4.10 71.98 0.30 -0.07 16 11 C -0.08 0.55 2.40 -9.54 -0.02 0.53 16 12 C -0.11 0.47 5.21 31.52 0.16 0.64 16 13 C -0.42 2.02 5.85 72.72 0.43 2.44 16 14 Si 1.04 -9.07 13.35 68.60 0.92 -8.16 16 15 C -0.46 2.78 8.65 113.37 0.98 3.76 16 16 C -0.46 2.59 8.65 113.37 0.98 3.57 16 17 C -0.39 3.65 5.30 73.05 0.39 4.03 16 18 C -0.17 -0.69 5.27 -19.81 -0.10 -0.79 16 19 C -0.07 -0.25 2.33 71.24 0.17 -0.08 16 20 O -0.55 -2.52 12.65 -148.98 -1.89 -4.40 16 21 Si 1.01 5.75 25.74 68.60 1.77 7.52 16 22 H -0.27 -2.61 6.73 99.48 0.67 -1.94 16 23 H -0.26 -1.72 7.11 99.48 0.71 -1.01 16 24 H -0.24 -1.24 7.11 99.48 0.71 -0.53 16 25 C -0.04 -0.26 8.20 22.51 0.18 -0.07 16 26 H 0.06 0.05 8.14 -2.38 -0.02 0.03 16 27 H 0.06 0.04 8.14 -2.38 -0.02 0.02 16 28 H 0.14 -0.94 8.14 -2.38 -0.02 -0.96 16 29 H 0.17 -0.80 7.60 -2.91 -0.02 -0.83 16 30 H 0.17 -1.52 6.27 -2.91 -0.02 -1.53 16 31 H 0.08 -0.68 7.57 -2.38 -0.02 -0.70 16 32 H 0.08 -0.75 7.66 -2.38 -0.02 -0.77 16 33 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 34 H 0.05 -0.08 8.12 -2.39 -0.02 -0.09 16 35 H 0.06 -0.29 8.04 -2.39 -0.02 -0.31 16 36 H 0.07 -0.26 8.04 -2.39 -0.02 -0.28 16 37 H 0.07 -0.32 8.04 -2.39 -0.02 -0.34 16 38 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 39 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 40 H 0.07 -0.42 7.96 -2.38 -0.02 -0.44 16 41 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 42 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 43 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 44 H 0.09 -0.96 8.03 -2.39 -0.02 -0.98 16 45 H 0.09 -0.93 8.06 -2.38 -0.02 -0.95 16 46 H 0.10 0.02 7.82 -2.39 -0.02 0.01 16 47 H 0.38 -0.31 8.60 -74.06 -0.64 -0.95 16 48 H 0.13 1.24 4.46 -2.91 -0.01 1.23 16 Total: 0.00 -15.34 391.61 6.46 -8.89 By element: Atomic # 1 Polarization: -14.86 SS G_CDS: 1.03 Total: -13.82 kcal Atomic # 6 Polarization: 14.76 SS G_CDS: 5.66 Total: 20.42 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -2.91 Total: -14.84 kcal Atomic # 14 Polarization: -3.32 SS G_CDS: 2.68 Total: -0.64 kcal Total: -15.34 6.46 -8.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_2787264_18051908.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.408 kcal (2) G-P(sol) polarization free energy of solvation -15.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds