Wall clock time and date at job start Sat Mar 6 2021 00:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 C 1.52995 * 109.47643 * 190.93802 * 6 5 4 8 8 O 1.42901 * 109.47074 * 293.54788 * 7 6 5 9 9 C 1.35900 * 117.00200 * 179.97438 * 8 7 6 10 10 C 1.38713 * 120.05667 * 0.02562 * 9 8 7 11 11 C 1.38168 * 119.94721 * 179.97438 * 10 9 8 12 12 C 1.38240 * 120.05406 * 359.97300 * 11 10 9 13 13 C 1.50699 * 119.94527 * 180.02562 * 12 11 10 14 14 O 1.42893 * 109.47634 * 245.00275 * 13 12 11 15 15 Si 1.86302 * 109.46783 * 5.00415 * 13 12 11 16 16 H 1.48493 * 109.47247 * 59.99748 * 15 13 12 17 17 H 1.48509 * 109.46786 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47068 * 299.99611 * 15 13 12 19 19 C 1.38285 * 120.11298 * 0.02562 * 12 11 10 20 20 C 1.38125 * 120.05574 * 359.74296 * 19 12 11 21 21 N 1.48006 * 120.02986 * 180.27239 * 20 19 12 22 22 O 1.21796 * 120.00017 * 0.21781 * 21 20 19 23 23 O 1.21800 * 119.99969 * 180.21302 * 21 20 19 24 24 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 25 25 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 26 26 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 27 27 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 29 29 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 31 31 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 32 32 H 1.08999 * 111.05229 * 356.11516 * 4 2 1 33 33 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 34 34 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 35 35 H 1.09004 * 109.47418 * 70.93608 * 6 5 4 36 36 H 1.09007 * 109.46916 * 53.54343 * 7 6 5 37 37 H 1.09005 * 109.47687 * 173.54545 * 7 6 5 38 38 H 1.08004 * 120.02460 * 359.97438 * 10 9 8 39 39 H 1.07993 * 119.97320 * 179.97438 * 11 10 9 40 40 H 1.09004 * 109.47077 * 125.00059 * 13 12 11 41 41 H 0.96706 * 114.00239 * 59.99418 * 14 13 12 42 42 H 1.08007 * 119.97485 * 179.97438 * 19 12 11 43 43 H 1.08996 * 111.41269 * 283.05303 * 24 6 5 44 44 H 1.09006 * 111.49251 * 158.06559 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1417 -2.9771 -1.5067 8 8 5.3027 -3.5593 -0.9107 9 6 5.8104 -4.6706 -1.5059 10 6 5.2041 -5.1896 -2.6404 11 6 5.7226 -6.3192 -3.2440 12 6 6.8449 -6.9317 -2.7185 13 6 7.4086 -8.1633 -3.3792 14 8 7.2861 -9.2776 -2.4932 15 14 6.4677 -8.5116 -4.9490 16 1 6.5951 -7.3536 -5.8698 17 1 7.0236 -9.7249 -5.6004 18 1 5.0349 -8.7338 -4.6283 19 6 7.4513 -6.4163 -1.5876 20 6 6.9397 -5.2845 -0.9833 21 7 7.5927 -4.7298 0.2236 22 8 8.5839 -5.2691 0.6819 23 8 7.1388 -3.7340 0.7583 24 6 2.5568 -1.0142 -1.4447 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.1907 2.2612 0.8899 29 1 3.6274 1.7027 -0.0005 30 1 2.1908 2.2612 -0.8900 31 1 3.2797 -0.4330 2.0151 32 1 1.7543 -1.3786 2.0840 33 1 4.1055 -2.5196 1.2701 34 1 2.5407 -3.0054 0.5873 35 1 4.5675 -1.0680 -0.6042 36 1 3.3305 -3.7052 -1.5088 37 1 4.3683 -2.6826 -2.5315 38 1 4.3275 -4.7111 -3.0516 39 1 5.2506 -6.7238 -4.1271 40 1 8.4604 -8.0002 -3.6146 41 1 6.3751 -9.4810 -2.2405 42 1 8.3278 -6.8969 -1.1787 43 1 1.8198 -1.7216 -1.8246 44 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_7_29190_18051908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:10:51 Heat of formation + Delta-G solvation = -95.866710 kcal Electronic energy + Delta-G solvation = -25722.668976 eV Core-core repulsion = 21959.823585 eV Total energy + Delta-G solvation = -3762.845391 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.01787 -41.55678 -39.84226 -37.73922 -37.23844 -36.68364 -33.40090 -32.25960 -30.76469 -29.30252 -28.57107 -27.88772 -27.57599 -26.44981 -24.56260 -23.43704 -22.76120 -20.95391 -20.24238 -19.47479 -19.16214 -18.42969 -18.32276 -17.46444 -17.19702 -16.57366 -16.30443 -15.95655 -15.86991 -15.59756 -15.32915 -14.62846 -14.28056 -14.08584 -14.02842 -13.97248 -13.91767 -13.64952 -13.49177 -13.35112 -13.28846 -12.80922 -12.54387 -12.45099 -12.35139 -12.31231 -12.25023 -11.96348 -11.91203 -11.80031 -11.75053 -11.47919 -10.94952 -10.87756 -10.72252 -10.67943 -10.39903 -9.81121 -1.10484 -0.30104 0.38466 0.53156 0.90792 1.18948 1.27159 1.43327 1.69188 1.70944 1.79145 1.82845 1.98872 2.46434 3.03755 3.12681 3.25340 3.34789 3.54877 3.60307 3.72769 3.79426 3.90132 4.11071 4.22378 4.25018 4.34312 4.38233 4.45327 4.52491 4.53484 4.61995 4.63045 4.65484 4.68078 4.69205 4.72370 4.96706 5.00185 5.05057 5.30297 5.35651 5.39191 5.45554 5.46847 5.53285 5.85576 6.31651 6.91634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.442 4.442 2 Si 0.970 3.030 3 C -0.443 4.443 4 C -0.398 4.398 5 C -0.112 4.112 6 C -0.081 4.081 7 C 0.057 3.943 8 O -0.276 6.276 9 C 0.205 3.795 10 C -0.209 4.209 11 C -0.033 4.033 12 C -0.162 4.162 13 C -0.077 4.077 14 O -0.534 6.534 15 Si 0.947 3.053 16 H -0.247 1.247 17 H -0.246 1.246 18 H -0.249 1.249 19 C 0.012 3.988 20 C -0.083 4.083 21 N 0.035 4.965 22 O -0.176 6.176 23 O -0.132 6.132 24 C -0.394 4.394 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.155 0.845 39 H 0.141 0.859 40 H 0.125 0.875 41 H 0.378 0.622 42 H 0.164 0.836 43 H 0.081 0.919 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.384 0.126 -5.302 7.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.168 2.832 3 C -0.551 4.551 4 C -0.484 4.484 5 C -0.149 4.149 6 C -0.100 4.100 7 C -0.018 4.018 8 O -0.186 6.186 9 C 0.155 3.845 10 C -0.228 4.228 11 C -0.051 4.051 12 C -0.163 4.163 13 C -0.187 4.187 14 O -0.339 6.339 15 Si 0.769 3.231 16 H -0.171 1.171 17 H -0.169 1.169 18 H -0.173 1.173 19 C -0.007 4.007 20 C -0.167 4.167 21 N 0.554 4.446 22 O -0.386 6.386 23 O -0.354 6.354 24 C -0.480 4.480 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.173 0.827 39 H 0.159 0.841 40 H 0.142 0.858 41 H 0.225 0.775 42 H 0.182 0.818 43 H 0.100 0.900 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.435 -0.192 -6.528 8.497 hybrid contribution -0.232 0.156 0.543 0.611 sum -5.667 -0.035 -5.985 8.242 Atomic orbital electron populations 1.26018 1.19947 1.04553 1.04542 0.80475 0.67354 0.67611 0.67783 1.26019 1.06770 1.17801 1.04541 1.26503 1.05546 1.06240 1.10121 1.21728 1.00946 0.98137 0.94104 1.21713 0.98918 0.94616 0.94724 1.23330 0.85142 0.95715 0.97577 1.86450 1.43921 1.36800 1.51478 1.18704 0.89430 0.86145 0.90196 1.21284 1.04168 1.00217 0.97154 1.21312 0.93070 0.93009 0.97691 1.20241 0.97812 1.00497 0.97763 1.24997 1.08041 0.83877 1.01824 1.86572 1.32767 1.47463 1.67123 0.85716 0.79187 0.82122 0.76072 1.17063 1.16912 1.17272 1.20818 0.98244 0.89700 0.91977 1.20597 0.99571 1.02235 0.94316 1.43285 1.00077 1.00151 1.01128 1.94561 1.15330 1.62268 1.66399 1.94604 1.66524 1.13855 1.60417 1.26851 1.02536 1.07851 1.10728 0.91169 0.91052 0.91100 0.90990 0.90939 0.91205 0.90286 0.90343 0.90597 0.92228 0.89261 0.91126 0.91072 0.82740 0.84131 0.85765 0.77471 0.81810 0.89972 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 1.02 8.65 101.05 0.87 1.90 16 2 Si 0.97 -3.17 13.35 -169.99 -2.27 -5.44 16 3 C -0.44 0.88 8.65 101.05 0.87 1.75 16 4 C -0.40 0.53 5.85 38.29 0.22 0.75 16 5 C -0.11 0.05 5.21 -25.30 -0.13 -0.08 16 6 C -0.08 0.11 2.40 -88.69 -0.21 -0.10 16 7 C 0.06 -0.09 4.11 37.15 0.15 0.07 16 8 O -0.28 -0.45 7.93 -41.54 -0.33 -0.78 16 9 C 0.21 0.24 6.67 -39.22 -0.26 -0.02 16 10 C -0.21 0.36 9.04 -39.43 -0.36 0.00 16 11 C -0.03 0.08 8.66 -39.61 -0.34 -0.27 16 12 C -0.16 0.23 5.35 -104.60 -0.56 -0.33 16 13 C -0.08 0.19 2.80 36.01 0.10 0.29 16 14 O -0.53 0.72 12.83 -35.23 -0.45 0.26 16 15 Si 0.95 -2.75 25.13 -169.99 -4.27 -7.02 16 16 H -0.25 0.62 7.11 56.52 0.40 1.02 16 17 H -0.25 0.26 7.11 56.52 0.40 0.66 16 18 H -0.25 0.78 7.04 56.52 0.40 1.18 16 19 C 0.01 0.01 9.19 -39.61 -0.36 -0.36 16 20 C -0.08 -0.23 6.87 -79.80 -0.55 -0.77 16 21 N 0.03 0.20 4.45 34.03 0.15 0.35 16 22 O -0.18 -1.16 18.45 -29.46 -0.54 -1.70 16 23 O -0.13 -0.91 17.24 -36.49 -0.63 -1.54 16 24 C -0.39 1.20 5.30 38.80 0.21 1.41 16 25 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 26 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 27 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 28 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 29 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 31 H 0.08 -0.07 8.04 -51.93 -0.42 -0.48 16 32 H 0.08 -0.11 8.04 -51.93 -0.42 -0.52 16 33 H 0.08 0.12 8.12 -51.93 -0.42 -0.30 16 34 H 0.06 -0.05 8.04 -51.93 -0.42 -0.47 16 35 H 0.09 -0.07 8.14 -51.93 -0.42 -0.49 16 36 H 0.07 -0.21 7.59 -51.93 -0.39 -0.60 16 37 H 0.07 -0.21 7.66 -51.93 -0.40 -0.61 16 38 H 0.16 -0.66 6.30 -52.48 -0.33 -0.99 16 39 H 0.14 -0.62 4.86 -52.49 -0.25 -0.87 16 40 H 0.12 -0.39 7.96 -51.93 -0.41 -0.81 16 41 H 0.38 -1.75 8.70 45.56 0.40 -1.35 16 42 H 0.16 0.05 7.61 -52.48 -0.40 -0.34 16 43 H 0.08 -0.30 8.03 -51.93 -0.42 -0.71 16 44 H 0.08 -0.28 8.06 -51.93 -0.42 -0.70 16 LS Contribution 364.32 15.07 5.49 5.49 Total: 0.00 -6.67 364.32 -9.21 -15.87 By element: Atomic # 1 Polarization: -3.72 SS G_CDS: -6.01 Total: -9.73 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -0.35 Total: 4.23 kcal Atomic # 7 Polarization: 0.20 SS G_CDS: 0.15 Total: 0.35 kcal Atomic # 8 Polarization: -1.80 SS G_CDS: -1.95 Total: -3.76 kcal Atomic # 14 Polarization: -5.92 SS G_CDS: -6.54 Total: -12.46 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -6.67 -9.21 -15.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_29190_18051908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.992 kcal (2) G-P(sol) polarization free energy of solvation -6.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds