Wall clock time and date at job start Sat Mar 6 2021 00:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 C 1.52995 * 109.47643 * 190.93802 * 6 5 4 8 8 O 1.42901 * 109.47074 * 293.54788 * 7 6 5 9 9 C 1.35900 * 117.00200 * 179.97438 * 8 7 6 10 10 C 1.38713 * 120.05667 * 0.02562 * 9 8 7 11 11 C 1.38168 * 119.94721 * 179.97438 * 10 9 8 12 12 C 1.38240 * 120.05406 * 359.97300 * 11 10 9 13 13 C 1.50699 * 119.94527 * 180.02562 * 12 11 10 14 14 O 1.42893 * 109.47634 * 245.00275 * 13 12 11 15 15 Si 1.86302 * 109.46783 * 5.00415 * 13 12 11 16 16 H 1.48493 * 109.47247 * 59.99748 * 15 13 12 17 17 H 1.48509 * 109.46786 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47068 * 299.99611 * 15 13 12 19 19 C 1.38285 * 120.11298 * 0.02562 * 12 11 10 20 20 C 1.38125 * 120.05574 * 359.74296 * 19 12 11 21 21 N 1.48006 * 120.02986 * 180.27239 * 20 19 12 22 22 O 1.21796 * 120.00017 * 0.21781 * 21 20 19 23 23 O 1.21800 * 119.99969 * 180.21302 * 21 20 19 24 24 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 25 25 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 26 26 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 27 27 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 29 29 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 31 31 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 32 32 H 1.08999 * 111.05229 * 356.11516 * 4 2 1 33 33 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 34 34 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 35 35 H 1.09004 * 109.47418 * 70.93608 * 6 5 4 36 36 H 1.09007 * 109.46916 * 53.54343 * 7 6 5 37 37 H 1.09005 * 109.47687 * 173.54545 * 7 6 5 38 38 H 1.08004 * 120.02460 * 359.97438 * 10 9 8 39 39 H 1.07993 * 119.97320 * 179.97438 * 11 10 9 40 40 H 1.09004 * 109.47077 * 125.00059 * 13 12 11 41 41 H 0.96706 * 114.00239 * 59.99418 * 14 13 12 42 42 H 1.08007 * 119.97485 * 179.97438 * 19 12 11 43 43 H 1.08996 * 111.41269 * 283.05303 * 24 6 5 44 44 H 1.09006 * 111.49251 * 158.06559 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1417 -2.9771 -1.5067 8 8 5.3027 -3.5593 -0.9107 9 6 5.8104 -4.6706 -1.5059 10 6 5.2041 -5.1896 -2.6404 11 6 5.7226 -6.3192 -3.2440 12 6 6.8449 -6.9317 -2.7185 13 6 7.4086 -8.1633 -3.3792 14 8 7.2861 -9.2776 -2.4932 15 14 6.4677 -8.5116 -4.9490 16 1 6.5951 -7.3536 -5.8698 17 1 7.0236 -9.7249 -5.6004 18 1 5.0349 -8.7338 -4.6283 19 6 7.4513 -6.4163 -1.5876 20 6 6.9397 -5.2845 -0.9833 21 7 7.5927 -4.7298 0.2236 22 8 8.5839 -5.2691 0.6819 23 8 7.1388 -3.7340 0.7583 24 6 2.5568 -1.0142 -1.4447 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.1907 2.2612 0.8899 29 1 3.6274 1.7027 -0.0005 30 1 2.1908 2.2612 -0.8900 31 1 3.2797 -0.4330 2.0151 32 1 1.7543 -1.3786 2.0840 33 1 4.1055 -2.5196 1.2701 34 1 2.5407 -3.0054 0.5873 35 1 4.5675 -1.0680 -0.6042 36 1 3.3305 -3.7052 -1.5088 37 1 4.3683 -2.6826 -2.5315 38 1 4.3275 -4.7111 -3.0516 39 1 5.2506 -6.7238 -4.1271 40 1 8.4604 -8.0002 -3.6146 41 1 6.3751 -9.4810 -2.2405 42 1 8.3278 -6.8969 -1.1787 43 1 1.8198 -1.7216 -1.8246 44 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_29190_18051908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:10:50 Heat of formation + Delta-G solvation = -87.917512 kcal Electronic energy + Delta-G solvation = -25722.324273 eV Core-core repulsion = 21959.823585 eV Total energy + Delta-G solvation = -3762.500688 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.30206 -41.59618 -39.77087 -37.63508 -37.59453 -36.61072 -33.42849 -32.17949 -30.65091 -29.11014 -28.37331 -27.83515 -27.69538 -26.29768 -24.49400 -23.44982 -22.77241 -20.86718 -20.30960 -19.80074 -19.15366 -18.65189 -18.33121 -17.40770 -17.14341 -16.41647 -16.14779 -15.85950 -15.78561 -15.46992 -15.15794 -14.53659 -14.16165 -13.94540 -13.83999 -13.81004 -13.74302 -13.47681 -13.36379 -13.21829 -13.16610 -12.71039 -12.65260 -12.43177 -12.29772 -12.26720 -12.23396 -12.13517 -12.10610 -11.78667 -11.63682 -11.38022 -10.85286 -10.76116 -10.53807 -10.46190 -10.27482 -9.76031 -1.30104 -0.23769 0.15577 0.33821 1.12681 1.45387 1.52040 1.59702 1.84671 1.94802 2.01091 2.02614 2.05803 2.64522 3.11345 3.27392 3.39201 3.54556 3.66477 3.75236 3.78049 3.94818 4.05481 4.24595 4.33026 4.39295 4.49743 4.52868 4.58338 4.63127 4.69678 4.74077 4.80192 4.81386 4.83605 4.86183 4.87670 5.06238 5.13536 5.21662 5.23860 5.35634 5.48948 5.52937 5.60555 5.65530 5.92231 6.45508 6.66007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.042 2.958 3 C -0.461 4.461 4 C -0.422 4.422 5 C -0.112 4.112 6 C -0.084 4.084 7 C 0.047 3.953 8 O -0.300 6.300 9 C 0.196 3.804 10 C -0.198 4.198 11 C -0.020 4.020 12 C -0.153 4.153 13 C -0.083 4.083 14 O -0.553 6.553 15 Si 0.984 3.016 16 H -0.245 1.245 17 H -0.276 1.276 18 H -0.235 1.235 19 C 0.002 3.998 20 C -0.107 4.107 21 N 0.038 4.962 22 O -0.205 6.205 23 O -0.167 6.167 24 C -0.390 4.390 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.189 0.811 39 H 0.171 0.829 40 H 0.127 0.873 41 H 0.391 0.609 42 H 0.158 0.842 43 H 0.098 0.902 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.552 -0.250 -8.118 11.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.235 2.765 3 C -0.568 4.568 4 C -0.505 4.505 5 C -0.150 4.150 6 C -0.102 4.102 7 C -0.026 4.026 8 O -0.211 6.211 9 C 0.146 3.854 10 C -0.216 4.216 11 C -0.038 4.038 12 C -0.155 4.155 13 C -0.192 4.192 14 O -0.361 6.361 15 Si 0.806 3.194 16 H -0.168 1.168 17 H -0.202 1.202 18 H -0.158 1.158 19 C -0.017 4.017 20 C -0.192 4.192 21 N 0.549 4.451 22 O -0.411 6.411 23 O -0.383 6.383 24 C -0.476 4.476 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.206 0.794 39 H 0.189 0.811 40 H 0.145 0.855 41 H 0.241 0.759 42 H 0.175 0.825 43 H 0.117 0.883 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.597 -0.534 -9.271 11.997 hybrid contribution 0.431 0.214 1.390 1.470 sum -7.166 -0.320 -7.881 10.657 Atomic orbital electron populations 1.26138 1.20577 1.04733 1.04599 0.79395 0.65925 0.65464 0.65735 1.26241 1.06533 1.19396 1.04584 1.26800 1.05405 1.06796 1.11522 1.21729 0.99859 0.98674 0.94723 1.21712 0.99226 0.94918 0.94375 1.23619 0.84823 0.95907 0.98284 1.86447 1.45069 1.37090 1.52481 1.18955 0.89158 0.86271 0.91032 1.21662 1.04504 0.99948 0.95533 1.21681 0.92023 0.92154 0.97896 1.20418 0.97827 1.00549 0.96692 1.25225 1.08782 0.83088 1.02118 1.86545 1.34282 1.47740 1.67495 0.85212 0.79199 0.80564 0.74445 1.16817 1.20170 1.15767 1.20885 0.98518 0.89387 0.92888 1.20846 1.00969 1.03737 0.93640 1.43740 0.99754 0.99729 1.01860 1.94521 1.16464 1.62510 1.67609 1.94578 1.66919 1.14987 1.61824 1.26866 1.01906 1.08022 1.10793 0.90654 0.91492 0.90860 0.91448 0.91594 0.90686 0.91575 0.90540 0.93782 0.91593 0.90568 0.89135 0.88954 0.79433 0.81148 0.85529 0.75929 0.82480 0.88318 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.58 8.65 113.37 0.98 3.56 16 2 Si 1.04 -7.27 13.35 68.60 0.92 -6.36 16 3 C -0.46 1.74 8.65 113.37 0.98 2.72 16 4 C -0.42 0.50 5.85 72.72 0.43 0.92 16 5 C -0.11 -0.05 5.21 31.52 0.16 0.11 16 6 C -0.08 0.24 2.40 -9.54 -0.02 0.21 16 7 C 0.05 -0.20 4.11 71.98 0.30 0.10 16 8 O -0.30 -1.21 7.93 -71.27 -0.57 -1.77 16 9 C 0.20 0.46 6.67 22.51 0.15 0.61 16 10 C -0.20 1.16 9.04 22.37 0.20 1.36 16 11 C -0.02 0.15 8.66 22.25 0.19 0.34 16 12 C -0.15 0.59 5.35 -19.85 -0.11 0.48 16 13 C -0.08 0.48 2.80 71.24 0.20 0.68 16 14 O -0.55 1.68 12.83 -148.98 -1.91 -0.23 16 15 Si 0.98 -7.76 25.13 68.60 1.72 -6.03 16 16 H -0.24 1.96 7.11 99.48 0.71 2.67 16 17 H -0.28 0.70 7.11 99.48 0.71 1.41 16 18 H -0.23 2.35 7.04 99.48 0.70 3.05 16 19 C 0.00 0.01 9.19 22.25 0.20 0.21 16 20 C -0.11 -0.75 6.87 36.47 0.25 -0.50 16 21 N 0.04 0.56 4.45 -46.24 -0.21 0.35 16 22 O -0.21 -3.44 18.45 18.89 0.35 -3.09 16 23 O -0.17 -2.92 17.24 25.61 0.44 -2.47 16 24 C -0.39 3.09 5.30 73.05 0.39 3.48 16 25 H 0.07 -0.48 7.96 -2.39 -0.02 -0.49 16 26 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 27 H 0.07 -0.43 7.96 -2.38 -0.02 -0.44 16 28 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 29 H 0.06 -0.16 7.96 -2.39 -0.02 -0.17 16 30 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 31 H 0.07 0.07 8.04 -2.39 -0.02 0.05 16 32 H 0.08 -0.10 8.04 -2.39 -0.02 -0.12 16 33 H 0.04 0.29 8.12 -2.39 -0.02 0.27 16 34 H 0.07 -0.08 8.04 -2.39 -0.02 -0.10 16 35 H 0.08 -0.03 8.14 -2.39 -0.02 -0.05 16 36 H 0.09 -0.75 7.59 -2.38 -0.02 -0.77 16 37 H 0.09 -0.78 7.66 -2.38 -0.02 -0.80 16 38 H 0.19 -2.39 6.30 -2.91 -0.02 -2.41 16 39 H 0.17 -2.25 4.86 -2.91 -0.01 -2.26 16 40 H 0.13 -0.83 7.96 -2.38 -0.02 -0.85 16 41 H 0.39 -3.93 8.70 -74.05 -0.64 -4.58 16 42 H 0.16 0.45 7.61 -2.91 -0.02 0.43 16 43 H 0.10 -1.04 8.03 -2.39 -0.02 -1.06 16 44 H 0.09 -0.87 8.06 -2.38 -0.02 -0.89 16 Total: 0.00 -19.51 364.32 6.16 -13.35 By element: Atomic # 1 Polarization: -9.15 SS G_CDS: 1.11 Total: -8.04 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 4.30 Total: 14.30 kcal Atomic # 7 Polarization: 0.56 SS G_CDS: -0.21 Total: 0.35 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -1.69 Total: -7.57 kcal Atomic # 14 Polarization: -15.03 SS G_CDS: 2.64 Total: -12.39 kcal Total: -19.51 6.16 -13.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_29190_18051908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.567 kcal (2) G-P(sol) polarization free energy of solvation -19.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds