Wall clock time and date at job start Sat Mar 6 2021 00:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 C 1.52995 * 109.47643 * 190.93802 * 6 5 4 8 8 O 1.42901 * 109.47074 * 293.54788 * 7 6 5 9 9 C 1.35900 * 117.00200 * 179.97438 * 8 7 6 10 10 C 1.38716 * 120.05639 * 359.72293 * 9 8 7 11 11 C 1.38158 * 119.94645 * 179.74883 * 10 9 8 12 12 C 1.38253 * 120.05446 * 0.52509 * 11 10 9 13 13 N 1.48001 * 119.94534 * 179.72400 * 12 11 10 14 14 O 1.21801 * 120.00274 * 180.02562 * 13 12 11 15 15 O 1.21800 * 119.99933 * 0.02562 * 13 12 11 16 16 C 1.38285 * 120.11155 * 359.74976 * 12 11 10 17 17 C 1.38123 * 120.05271 * 359.97427 * 16 12 11 18 18 C 1.50700 * 120.02508 * 179.97438 * 17 16 12 19 19 O 1.42907 * 109.47217 * 105.02291 * 18 17 16 20 20 Si 1.86297 * 109.47235 * 345.02485 * 18 17 16 21 21 H 1.48501 * 109.47388 * 60.00100 * 20 18 17 22 22 H 1.48508 * 109.47214 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46934 * 299.99558 * 20 18 17 24 24 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 25 25 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 26 26 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 27 27 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 29 29 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 31 31 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 32 32 H 1.08999 * 111.05229 * 356.11516 * 4 2 1 33 33 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 34 34 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 35 35 H 1.09004 * 109.47418 * 70.93608 * 6 5 4 36 36 H 1.09007 * 109.46916 * 53.54343 * 7 6 5 37 37 H 1.09005 * 109.47687 * 173.54545 * 7 6 5 38 38 H 1.07999 * 120.02692 * 0.02562 * 10 9 8 39 39 H 1.07998 * 119.97818 * 180.27428 * 11 10 9 40 40 H 1.07997 * 119.97519 * 179.97438 * 16 12 11 41 41 H 1.09005 * 109.47445 * 225.02112 * 18 17 16 42 42 H 0.96710 * 113.99477 * 59.99819 * 19 18 17 43 43 H 1.08996 * 111.41269 * 283.05303 * 24 6 5 44 44 H 1.09006 * 111.49251 * 158.06559 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1417 -2.9771 -1.5067 8 8 5.3027 -3.5593 -0.9107 9 6 5.8104 -4.6706 -1.5059 10 6 5.2004 -5.1932 -2.6368 11 6 5.7215 -6.3200 -3.2431 12 6 6.8437 -6.9329 -2.7173 13 7 7.3963 -8.1434 -3.3652 14 8 8.3846 -8.6845 -2.9026 15 8 6.8628 -8.5985 -4.3610 16 6 7.4504 -6.4172 -1.5867 17 6 6.9366 -5.2876 -0.9802 18 6 7.5978 -4.7264 0.2522 19 8 8.3277 -3.5475 -0.0938 20 14 8.7648 -5.9931 0.9622 21 1 9.8018 -6.3308 -0.0457 22 1 9.4170 -5.4399 2.1763 23 1 8.0064 -7.2182 1.3218 24 6 2.5568 -1.0142 -1.4447 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.1907 2.2612 0.8899 29 1 3.6274 1.7027 -0.0005 30 1 2.1908 2.2612 -0.8900 31 1 3.2797 -0.4330 2.0151 32 1 1.7543 -1.3786 2.0840 33 1 4.1055 -2.5196 1.2701 34 1 2.5407 -3.0054 0.5873 35 1 4.5675 -1.0680 -0.6042 36 1 3.3305 -3.7052 -1.5088 37 1 4.3683 -2.6826 -2.5315 38 1 4.3214 -4.7172 -3.0456 39 1 5.2496 -6.7248 -4.1261 40 1 8.3266 -6.8979 -1.1776 41 1 6.8367 -4.4785 0.9921 42 1 7.7820 -2.8435 -0.4705 43 1 1.8198 -1.7216 -1.8246 44 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_29409_18051908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:19:01 Heat of formation + Delta-G solvation = -92.142297 kcal Electronic energy + Delta-G solvation = -25656.980254 eV Core-core repulsion = 21894.296366 eV Total energy + Delta-G solvation = -3762.683888 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.34345 -41.84462 -39.34509 -37.80535 -37.68340 -36.70808 -33.32006 -32.34739 -30.62979 -29.10604 -28.37495 -27.94682 -27.21809 -26.74580 -24.44716 -23.35568 -22.96544 -20.74541 -20.29800 -19.84941 -19.52294 -18.68321 -18.33284 -17.59069 -17.24555 -16.56176 -16.03753 -15.83907 -15.69647 -15.36891 -14.76849 -14.66408 -14.31155 -14.20766 -13.86570 -13.81735 -13.75641 -13.47186 -13.37435 -13.18148 -13.14924 -12.78716 -12.69467 -12.45170 -12.38325 -12.36904 -12.33525 -12.16171 -12.02636 -11.70133 -11.48605 -11.32919 -11.21936 -10.75789 -10.60537 -10.45294 -10.25887 -9.91607 -1.33314 -0.36986 0.15719 0.30210 1.04439 1.38383 1.41131 1.62830 1.84621 1.88755 1.99644 2.01899 2.04851 2.65672 3.03165 3.20273 3.40815 3.59596 3.73644 3.78042 3.84251 3.98703 4.06214 4.09160 4.24984 4.36514 4.49370 4.53611 4.56446 4.61876 4.66492 4.74345 4.77172 4.80996 4.84342 4.85279 4.85831 4.90882 5.15810 5.20561 5.25331 5.38036 5.50880 5.55315 5.61488 5.65192 5.93799 6.38513 6.56615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.460 4.460 2 Si 1.039 2.961 3 C -0.461 4.461 4 C -0.417 4.417 5 C -0.113 4.113 6 C -0.083 4.083 7 C 0.049 3.951 8 O -0.299 6.299 9 C 0.210 3.790 10 C -0.195 4.195 11 C -0.002 4.002 12 C -0.099 4.099 13 N 0.035 4.965 14 O -0.207 6.207 15 O -0.166 6.166 16 C -0.032 4.032 17 C -0.152 4.152 18 C -0.072 4.072 19 O -0.545 6.545 20 Si 1.006 2.994 21 H -0.266 1.266 22 H -0.257 1.257 23 H -0.242 1.242 24 C -0.394 4.394 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.189 0.811 39 H 0.175 0.825 40 H 0.151 0.849 41 H 0.105 0.895 42 H 0.382 0.618 43 H 0.093 0.907 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.505 7.294 1.054 10.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.567 4.567 2 Si 1.233 2.767 3 C -0.568 4.568 4 C -0.501 4.501 5 C -0.151 4.151 6 C -0.101 4.101 7 C -0.025 4.025 8 O -0.211 6.211 9 C 0.161 3.839 10 C -0.214 4.214 11 C -0.021 4.021 12 C -0.183 4.183 13 N 0.548 4.452 14 O -0.413 6.413 15 O -0.383 6.383 16 C -0.051 4.051 17 C -0.154 4.154 18 C -0.181 4.181 19 O -0.353 6.353 20 Si 0.828 3.172 21 H -0.191 1.191 22 H -0.181 1.181 23 H -0.165 1.165 24 C -0.480 4.480 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.207 0.793 39 H 0.193 0.807 40 H 0.168 0.832 41 H 0.123 0.877 42 H 0.231 0.769 43 H 0.111 0.889 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.647 7.063 2.160 9.937 hybrid contribution -0.440 -0.011 -0.705 0.831 sum -7.087 7.052 1.455 10.103 Atomic orbital electron populations 1.26242 1.21627 1.04527 1.04334 0.79401 0.65388 0.65622 0.66332 1.26253 1.06777 1.19410 1.04356 1.26702 1.05555 1.06793 1.11090 1.21759 1.00323 0.98446 0.94546 1.21730 0.99296 0.94867 0.94226 1.23569 0.84858 0.95748 0.98311 1.86145 1.45005 1.37184 1.52723 1.19141 0.89724 0.85458 0.89555 1.21643 1.04443 0.98212 0.97066 1.21167 0.89927 0.92364 0.98638 1.21041 1.03465 0.92297 1.01497 1.43865 0.99546 1.01990 0.99843 1.94557 1.16683 1.62437 1.67596 1.94509 1.61527 1.67229 1.15083 1.20864 0.98319 0.94174 0.91787 1.19625 0.97391 0.96805 1.01595 1.25050 1.03059 0.94693 0.95342 1.86716 1.38103 1.25329 1.85103 0.84547 0.77796 0.75670 0.79217 1.19123 1.18068 1.16483 1.26858 1.02318 1.08031 1.10784 0.91089 0.91675 0.91048 0.91625 0.91135 0.91102 0.91005 0.90719 0.92429 0.91745 0.89405 0.89590 0.89199 0.79348 0.80741 0.83208 0.87743 0.76874 0.88869 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 3.31 8.65 113.37 0.98 4.30 16 2 Si 1.04 -10.86 13.35 68.60 0.92 -9.95 16 3 C -0.46 3.22 8.65 113.37 0.98 4.20 16 4 C -0.42 2.89 5.85 72.72 0.43 3.31 16 5 C -0.11 0.81 5.21 31.52 0.16 0.98 16 6 C -0.08 0.82 2.40 -9.54 -0.02 0.80 16 7 C 0.05 -0.53 4.11 71.98 0.30 -0.23 16 8 O -0.30 2.06 8.83 -92.42 -0.82 1.25 16 9 C 0.21 -0.93 6.62 22.51 0.15 -0.78 16 10 C -0.19 1.33 9.04 22.37 0.20 1.53 16 11 C 0.00 0.00 9.55 22.25 0.21 0.22 16 12 C -0.10 -0.46 6.85 36.39 0.25 -0.21 16 13 N 0.04 0.40 4.45 -46.44 -0.21 0.19 16 14 O -0.21 -3.07 18.44 18.89 0.35 -2.72 16 15 O -0.17 -1.98 18.44 18.89 0.35 -1.64 16 16 C -0.03 -0.12 8.16 22.25 0.18 0.07 16 17 C -0.15 0.07 5.28 -19.77 -0.10 -0.04 16 18 C -0.07 0.08 2.33 71.24 0.17 0.25 16 19 O -0.55 -0.17 12.65 -148.98 -1.89 -2.06 16 20 Si 1.01 1.69 25.75 68.60 1.77 3.46 16 21 H -0.27 -1.36 6.73 99.48 0.67 -0.69 16 22 H -0.26 -0.84 7.11 99.48 0.71 -0.13 16 23 H -0.24 -0.28 7.11 99.48 0.71 0.43 16 24 C -0.39 4.61 5.30 73.05 0.39 5.00 16 25 H 0.07 -0.50 7.96 -2.39 -0.02 -0.52 16 26 H 0.06 -0.38 7.96 -2.39 -0.02 -0.40 16 27 H 0.07 -0.50 7.96 -2.38 -0.02 -0.52 16 28 H 0.06 -0.37 7.96 -2.39 -0.02 -0.39 16 29 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 30 H 0.07 -0.49 7.96 -2.39 -0.02 -0.51 16 31 H 0.07 -0.41 8.04 -2.39 -0.02 -0.43 16 32 H 0.07 -0.45 8.04 -2.39 -0.02 -0.47 16 33 H 0.06 -0.28 8.12 -2.39 -0.02 -0.29 16 34 H 0.06 -0.48 8.04 -2.39 -0.02 -0.50 16 35 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 36 H 0.09 -1.12 7.58 -2.38 -0.02 -1.14 16 37 H 0.09 -1.22 7.68 -2.38 -0.02 -1.24 16 38 H 0.19 -2.59 6.30 -2.91 -0.02 -2.61 16 39 H 0.18 -0.95 7.60 -2.91 -0.02 -0.97 16 40 H 0.15 0.71 4.44 -2.91 -0.01 0.70 16 41 H 0.10 -0.49 7.83 -2.38 -0.02 -0.51 16 42 H 0.38 -2.05 8.61 -74.05 -0.64 -2.68 16 43 H 0.09 -1.20 8.03 -2.39 -0.02 -1.22 16 44 H 0.09 -1.16 8.06 -2.38 -0.02 -1.17 16 Total: 0.00 -14.54 365.14 5.83 -8.72 By element: Atomic # 1 Polarization: -17.72 SS G_CDS: 1.09 Total: -16.63 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: 4.27 Total: 19.38 kcal Atomic # 7 Polarization: 0.40 SS G_CDS: -0.21 Total: 0.19 kcal Atomic # 8 Polarization: -3.16 SS G_CDS: -2.00 Total: -5.17 kcal Atomic # 14 Polarization: -9.17 SS G_CDS: 2.68 Total: -6.49 kcal Total: -14.54 5.83 -8.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_29409_18051908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.427 kcal (2) G-P(sol) polarization free energy of solvation -14.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds