Wall clock time and date at job start Sat Mar 6 2021 00:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 C 1.52995 * 109.47643 * 190.93802 * 6 5 4 8 8 O 1.42901 * 109.47074 * 293.54788 * 7 6 5 9 9 C 1.35919 * 117.00178 * 179.97438 * 8 7 6 10 10 C 1.38707 * 120.04408 * 359.72069 * 9 8 7 11 11 C 1.38167 * 119.96052 * 179.75191 * 10 9 8 12 12 C 1.38350 * 120.03535 * 0.54956 * 11 10 9 13 13 Cl 1.73603 * 119.95148 * 179.72572 * 12 11 10 14 14 C 1.38385 * 120.08971 * 359.70318 * 12 11 10 15 15 C 1.38115 * 120.04272 * 0.02562 * 14 12 11 16 16 C 1.50698 * 120.02459 * 180.02562 * 15 14 12 17 17 O 1.42902 * 109.47223 * 104.98006 * 16 15 14 18 18 Si 1.86299 * 109.46871 * 344.98536 * 16 15 14 19 19 H 1.48498 * 109.47603 * 59.99399 * 18 16 15 20 20 H 1.48502 * 109.47370 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47122 * 299.99626 * 18 16 15 22 22 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 23 23 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 24 24 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 25 25 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 27 27 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 29 29 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 30 30 H 1.08999 * 111.05229 * 356.11516 * 4 2 1 31 31 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 32 32 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 33 33 H 1.09004 * 109.47418 * 70.93608 * 6 5 4 34 34 H 1.09007 * 109.46916 * 53.54343 * 7 6 5 35 35 H 1.09005 * 109.47687 * 173.54545 * 7 6 5 36 36 H 1.08003 * 120.01430 * 359.97438 * 10 9 8 37 37 H 1.07996 * 119.98064 * 180.27147 * 11 10 9 38 38 H 1.08000 * 119.97970 * 180.02562 * 14 12 11 39 39 H 1.08991 * 109.47431 * 224.98224 * 16 15 14 40 40 H 0.96700 * 113.99697 * 60.00412 * 17 16 15 41 41 H 1.08996 * 111.41269 * 283.05303 * 22 6 5 42 42 H 1.09006 * 111.49251 * 158.06559 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1417 -2.9771 -1.5067 8 8 5.3027 -3.5593 -0.9107 9 6 5.8105 -4.6707 -1.5060 10 6 5.2003 -5.1932 -2.6368 11 6 5.7210 -6.3200 -3.2435 12 6 6.8436 -6.9338 -2.7172 13 17 7.4918 -8.3537 -3.4772 14 6 7.4508 -6.4171 -1.5860 15 6 6.9365 -5.2876 -0.9800 16 6 7.5984 -4.7250 0.2514 17 8 8.3277 -3.5463 -0.0962 18 14 8.7661 -5.9908 0.9620 19 1 9.8025 -6.3293 -0.0462 20 1 9.4179 -5.4367 2.1758 21 1 8.0082 -7.2157 1.3233 22 6 2.5568 -1.0142 -1.4447 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 2.1907 2.2612 0.8899 27 1 3.6274 1.7027 -0.0005 28 1 2.1908 2.2612 -0.8900 29 1 3.2797 -0.4330 2.0151 30 1 1.7543 -1.3786 2.0840 31 1 4.1055 -2.5196 1.2701 32 1 2.5407 -3.0054 0.5873 33 1 4.5675 -1.0680 -0.6042 34 1 3.3305 -3.7052 -1.5088 35 1 4.3683 -2.6826 -2.5315 36 1 4.3208 -4.7173 -3.0447 37 1 5.2487 -6.7245 -4.1265 38 1 8.3273 -6.8974 -1.1769 39 1 6.8377 -4.4765 0.9914 40 1 7.7818 -2.8429 -0.4732 41 1 1.8198 -1.7216 -1.8246 42 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_7_508404_18051908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:26:31 Heat of formation + Delta-G solvation = -111.169596 kcal Electronic energy + Delta-G solvation = -22017.919619 eV Core-core repulsion = 18725.627288 eV Total energy + Delta-G solvation = -3292.292331 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.102 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.59047 -39.21589 -37.77725 -37.12046 -36.59627 -32.89595 -31.21707 -30.45438 -29.31823 -28.59217 -27.47006 -26.77671 -24.48185 -23.27351 -22.68115 -20.85024 -19.42172 -18.33736 -17.74060 -17.20413 -16.97938 -16.25192 -15.98522 -15.65382 -15.43373 -15.23834 -14.70864 -14.38422 -14.21879 -14.08619 -14.04970 -13.99718 -13.68462 -13.57849 -13.38811 -13.34738 -12.99806 -12.96469 -12.59068 -12.34083 -12.19382 -12.04710 -11.97512 -11.75027 -11.63513 -11.48627 -11.17914 -11.00474 -10.97587 -10.67748 -10.45139 -10.16088 -9.19196 0.02105 0.09865 1.16454 1.23414 1.46102 1.54479 1.58816 1.75878 1.78446 2.01138 2.03784 2.42273 2.44586 3.45060 3.56887 3.65097 3.80611 3.90065 3.92750 3.98275 4.04636 4.20863 4.28164 4.39308 4.42488 4.45115 4.52315 4.58650 4.61133 4.63605 4.64256 4.65489 4.65887 4.93637 4.95559 5.03449 5.04689 5.11377 5.23155 5.29396 5.34420 5.39991 5.43357 5.43802 6.19938 6.61581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 0.970 3.030 3 C -0.443 4.443 4 C -0.399 4.399 5 C -0.109 4.109 6 C -0.082 4.082 7 C 0.064 3.936 8 O -0.310 6.310 9 C 0.150 3.850 10 C -0.195 4.195 11 C -0.064 4.064 12 C -0.067 4.067 13 Cl -0.065 7.065 14 C -0.075 4.075 15 C -0.135 4.135 16 C -0.080 4.080 17 O -0.536 6.536 18 Si 1.007 2.993 19 H -0.250 1.250 20 H -0.252 1.252 21 H -0.246 1.246 22 C -0.394 4.394 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.080 0.920 40 H 0.369 0.631 41 H 0.082 0.918 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.056 2.413 -0.100 4.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.168 2.832 3 C -0.551 4.551 4 C -0.485 4.485 5 C -0.147 4.147 6 C -0.101 4.101 7 C -0.010 4.010 8 O -0.223 6.223 9 C 0.104 3.896 10 C -0.214 4.214 11 C -0.083 4.083 12 C -0.094 4.094 13 Cl -0.036 7.036 14 C -0.094 4.094 15 C -0.136 4.136 16 C -0.188 4.188 17 O -0.341 6.341 18 Si 0.826 3.174 19 H -0.173 1.173 20 H -0.176 1.176 21 H -0.170 1.170 22 C -0.480 4.480 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.098 0.902 40 H 0.217 0.783 41 H 0.100 0.900 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.912 1.478 0.573 3.315 hybrid contribution -0.986 0.411 -0.916 1.407 sum -3.897 1.890 -0.343 4.345 Atomic orbital electron populations 1.26022 1.19961 1.04593 1.04547 0.80473 0.67424 0.67552 0.67771 1.26021 1.06681 1.17852 1.04568 1.26510 1.05559 1.06301 1.10168 1.21714 1.00682 0.98196 0.94112 1.21707 0.98775 0.94944 0.94668 1.23095 0.85611 0.95126 0.97204 1.86060 1.44375 1.38796 1.53092 1.18813 0.92268 0.86998 0.91507 1.21252 1.03071 0.99330 0.97701 1.20910 0.93795 0.94209 0.99353 1.20707 0.98273 0.92995 0.97382 1.98389 1.85877 1.38277 1.81068 1.20865 0.99333 0.95018 0.94165 1.19565 0.96307 0.97220 1.00555 1.25173 1.02933 0.94903 0.95827 1.86697 1.37439 1.25063 1.84916 0.84572 0.77822 0.75374 0.79631 1.17350 1.17622 1.16951 1.26835 1.02633 1.07851 1.10638 0.91131 0.91091 0.91068 0.91033 0.91011 0.91150 0.90451 0.90325 0.91259 0.92022 0.89645 0.91634 0.91549 0.84224 0.84291 0.84174 0.90200 0.78286 0.89950 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 1.10 8.65 101.05 0.87 1.98 16 2 Si 0.97 -3.58 13.35 -169.99 -2.27 -5.85 16 3 C -0.44 1.08 8.65 101.05 0.87 1.95 16 4 C -0.40 0.87 5.85 38.29 0.22 1.09 16 5 C -0.11 0.17 5.21 -25.30 -0.13 0.04 16 6 C -0.08 0.18 2.40 -88.69 -0.21 -0.03 16 7 C 0.06 -0.11 4.11 37.15 0.15 0.04 16 8 O -0.31 -0.02 8.82 -19.49 -0.17 -0.19 16 9 C 0.15 0.14 6.62 -39.22 -0.26 -0.12 16 10 C -0.19 0.00 9.04 -39.43 -0.36 -0.36 16 11 C -0.06 -0.03 9.82 -39.57 -0.39 -0.42 16 12 C -0.07 -0.12 6.32 -39.49 -0.25 -0.37 16 13 Cl -0.06 -0.13 28.95 -51.86 -1.50 -1.63 16 14 C -0.08 -0.15 8.44 -39.57 -0.33 -0.48 16 15 C -0.14 -0.22 5.28 -104.48 -0.55 -0.77 16 16 C -0.08 -0.09 2.33 36.00 0.08 -0.01 16 17 O -0.54 -1.04 12.65 -35.23 -0.45 -1.48 16 18 Si 1.01 1.08 25.75 -169.99 -4.38 -3.29 16 19 H -0.25 -0.43 6.73 56.52 0.38 -0.04 16 20 H -0.25 -0.49 7.11 56.52 0.40 -0.08 16 21 H -0.25 -0.17 7.11 56.52 0.40 0.23 16 22 C -0.39 1.27 5.30 38.80 0.21 1.48 16 23 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 24 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 25 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 26 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 27 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 28 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 29 H 0.08 -0.15 8.04 -51.93 -0.42 -0.56 16 30 H 0.08 -0.16 8.04 -51.93 -0.42 -0.58 16 31 H 0.07 -0.03 8.12 -51.93 -0.42 -0.46 16 32 H 0.06 -0.09 8.04 -51.93 -0.42 -0.51 16 33 H 0.09 -0.18 8.14 -51.93 -0.42 -0.61 16 34 H 0.07 -0.15 7.58 -51.93 -0.39 -0.54 16 35 H 0.07 -0.16 7.68 -51.93 -0.40 -0.56 16 36 H 0.14 -0.29 6.30 -52.48 -0.33 -0.62 16 37 H 0.14 -0.17 8.06 -52.49 -0.42 -0.59 16 38 H 0.14 0.18 4.89 -52.49 -0.26 -0.08 16 39 H 0.08 0.01 7.83 -51.93 -0.41 -0.40 16 40 H 0.37 -0.10 8.61 45.56 0.39 0.29 16 41 H 0.08 -0.28 8.03 -51.93 -0.42 -0.70 16 42 H 0.08 -0.28 8.06 -51.93 -0.42 -0.70 16 LS Contribution 353.66 15.07 5.33 5.33 Total: 0.00 -3.51 353.66 -9.55 -13.06 By element: Atomic # 1 Polarization: -3.92 SS G_CDS: -6.05 Total: -9.97 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -0.07 Total: 4.02 kcal Atomic # 8 Polarization: -1.06 SS G_CDS: -0.62 Total: -1.68 kcal Atomic # 14 Polarization: -2.50 SS G_CDS: -6.65 Total: -9.15 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.50 Total: -1.63 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -3.51 -9.55 -13.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_508404_18051908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.106 kcal (2) G-P(sol) polarization free energy of solvation -3.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds