Wall clock time and date at job start Sat Mar 6 2021 00:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 C 1.52995 * 109.47643 * 190.93802 * 6 5 4 8 8 O 1.42901 * 109.47074 * 293.54788 * 7 6 5 9 9 C 1.35919 * 117.00178 * 179.97438 * 8 7 6 10 10 C 1.38707 * 120.04408 * 359.72069 * 9 8 7 11 11 C 1.38167 * 119.96052 * 179.75191 * 10 9 8 12 12 C 1.38350 * 120.03535 * 0.54956 * 11 10 9 13 13 Cl 1.73603 * 119.95148 * 179.72572 * 12 11 10 14 14 C 1.38385 * 120.08971 * 359.70318 * 12 11 10 15 15 C 1.38115 * 120.04272 * 0.02562 * 14 12 11 16 16 C 1.50698 * 120.02459 * 180.02562 * 15 14 12 17 17 O 1.42902 * 109.47223 * 104.98006 * 16 15 14 18 18 Si 1.86299 * 109.46871 * 344.98536 * 16 15 14 19 19 H 1.48498 * 109.47603 * 59.99399 * 18 16 15 20 20 H 1.48502 * 109.47370 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47122 * 299.99626 * 18 16 15 22 22 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 23 23 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 24 24 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 25 25 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 27 27 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 29 29 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 30 30 H 1.08999 * 111.05229 * 356.11516 * 4 2 1 31 31 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 32 32 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 33 33 H 1.09004 * 109.47418 * 70.93608 * 6 5 4 34 34 H 1.09007 * 109.46916 * 53.54343 * 7 6 5 35 35 H 1.09005 * 109.47687 * 173.54545 * 7 6 5 36 36 H 1.08003 * 120.01430 * 359.97438 * 10 9 8 37 37 H 1.07996 * 119.98064 * 180.27147 * 11 10 9 38 38 H 1.08000 * 119.97970 * 180.02562 * 14 12 11 39 39 H 1.08991 * 109.47431 * 224.98224 * 16 15 14 40 40 H 0.96700 * 113.99697 * 60.00412 * 17 16 15 41 41 H 1.08996 * 111.41269 * 283.05303 * 22 6 5 42 42 H 1.09006 * 111.49251 * 158.06559 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1417 -2.9771 -1.5067 8 8 5.3027 -3.5593 -0.9107 9 6 5.8105 -4.6707 -1.5060 10 6 5.2003 -5.1932 -2.6368 11 6 5.7210 -6.3200 -3.2435 12 6 6.8436 -6.9338 -2.7172 13 17 7.4918 -8.3537 -3.4772 14 6 7.4508 -6.4171 -1.5860 15 6 6.9365 -5.2876 -0.9800 16 6 7.5984 -4.7250 0.2514 17 8 8.3277 -3.5463 -0.0962 18 14 8.7661 -5.9908 0.9620 19 1 9.8025 -6.3293 -0.0462 20 1 9.4179 -5.4367 2.1758 21 1 8.0082 -7.2157 1.3233 22 6 2.5568 -1.0142 -1.4447 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 2.1907 2.2612 0.8899 27 1 3.6274 1.7027 -0.0005 28 1 2.1908 2.2612 -0.8900 29 1 3.2797 -0.4330 2.0151 30 1 1.7543 -1.3786 2.0840 31 1 4.1055 -2.5196 1.2701 32 1 2.5407 -3.0054 0.5873 33 1 4.5675 -1.0680 -0.6042 34 1 3.3305 -3.7052 -1.5088 35 1 4.3683 -2.6826 -2.5315 36 1 4.3208 -4.7173 -3.0447 37 1 5.2487 -6.7245 -4.1265 38 1 8.3273 -6.8974 -1.1769 39 1 6.8377 -4.4765 0.9914 40 1 7.7818 -2.8429 -0.4732 41 1 1.8198 -1.7216 -1.8246 42 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_508404_18051908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:26:31 Heat of formation + Delta-G solvation = -100.045789 kcal Electronic energy + Delta-G solvation = -22017.437255 eV Core-core repulsion = 18725.627288 eV Total energy + Delta-G solvation = -3291.809967 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.102 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.58352 -39.18501 -37.86607 -37.16715 -36.49975 -32.93274 -31.16502 -30.34851 -29.09834 -28.36838 -27.30478 -26.81967 -24.35063 -23.23413 -22.71245 -20.67714 -19.40925 -18.40946 -17.73666 -17.20134 -16.94316 -16.27608 -15.88913 -15.62281 -15.42358 -15.23459 -14.68460 -14.32160 -14.22360 -14.03286 -13.82985 -13.78895 -13.52051 -13.40833 -13.33285 -13.17585 -12.94473 -12.84054 -12.46512 -12.28952 -12.17678 -12.13759 -11.91965 -11.88340 -11.54365 -11.34023 -11.21761 -11.08765 -10.75397 -10.43857 -10.25253 -10.19900 -9.22468 -0.01412 0.05067 1.07965 1.14416 1.44385 1.46855 1.71484 1.89775 2.02351 2.03482 2.13604 2.38620 2.66346 3.43255 3.58842 3.80310 3.86989 3.91364 4.03010 4.08070 4.10178 4.22447 4.40287 4.43508 4.57795 4.59250 4.62588 4.73657 4.77029 4.81946 4.85057 4.85887 4.86585 4.92231 5.04619 5.08177 5.15602 5.24591 5.37760 5.38325 5.52032 5.55838 5.61987 5.65580 6.24968 6.61317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.458 4.458 2 Si 1.040 2.960 3 C -0.459 4.459 4 C -0.416 4.416 5 C -0.111 4.111 6 C -0.082 4.082 7 C 0.058 3.942 8 O -0.315 6.315 9 C 0.147 3.853 10 C -0.192 4.192 11 C -0.065 4.065 12 C -0.080 4.080 13 Cl -0.072 7.072 14 C -0.089 4.089 15 C -0.147 4.147 16 C -0.079 4.079 17 O -0.549 6.549 18 Si 1.021 2.979 19 H -0.262 1.262 20 H -0.266 1.266 21 H -0.241 1.241 22 C -0.397 4.397 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.163 0.837 37 H 0.156 0.844 38 H 0.140 0.860 39 H 0.088 0.912 40 H 0.378 0.622 41 H 0.089 0.911 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.143 2.862 -0.902 5.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.565 4.565 2 Si 1.233 2.767 3 C -0.566 4.566 4 C -0.501 4.501 5 C -0.148 4.148 6 C -0.101 4.101 7 C -0.016 4.016 8 O -0.229 6.229 9 C 0.101 3.899 10 C -0.211 4.211 11 C -0.083 4.083 12 C -0.107 4.107 13 Cl -0.044 7.044 14 C -0.107 4.107 15 C -0.148 4.148 16 C -0.188 4.188 17 O -0.356 6.356 18 Si 0.842 3.158 19 H -0.187 1.187 20 H -0.191 1.191 21 H -0.164 1.164 22 C -0.482 4.482 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.180 0.820 37 H 0.174 0.826 38 H 0.157 0.843 39 H 0.106 0.894 40 H 0.227 0.773 41 H 0.108 0.892 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.008 1.931 -0.216 4.454 hybrid contribution -0.667 0.316 -0.634 0.973 sum -4.675 2.247 -0.850 5.256 Atomic orbital electron populations 1.26202 1.21260 1.04551 1.04464 0.79401 0.65603 0.65649 0.66003 1.26219 1.06714 1.19173 1.04481 1.26716 1.05541 1.06690 1.11130 1.21725 1.00132 0.98452 0.94538 1.21709 0.99154 0.94905 0.94295 1.23290 0.85255 0.95374 0.97721 1.86066 1.45012 1.38469 1.53349 1.18909 0.92099 0.87191 0.91731 1.21512 1.03478 0.98973 0.97136 1.21154 0.93266 0.94147 0.99751 1.20841 0.99011 0.93141 0.97679 1.98381 1.86080 1.38742 1.81155 1.20949 0.99652 0.95483 0.94627 1.19621 0.96918 0.97436 1.00846 1.25156 1.02970 0.94617 0.96026 1.86665 1.38219 1.25602 1.85087 0.84375 0.77366 0.75546 0.78465 1.18654 1.19085 1.16356 1.26900 1.02315 1.08042 1.10948 0.90980 0.91448 0.91093 0.91403 0.91226 0.90991 0.90973 0.90594 0.92768 0.92011 0.89760 0.90812 0.90478 0.81955 0.82614 0.84296 0.89365 0.77324 0.89198 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.56 8.65 113.37 0.98 3.54 16 2 Si 1.04 -8.38 13.35 68.60 0.92 -7.46 16 3 C -0.46 2.40 8.65 113.37 0.98 3.38 16 4 C -0.42 1.74 5.85 72.72 0.43 2.16 16 5 C -0.11 0.34 5.21 31.52 0.16 0.51 16 6 C -0.08 0.43 2.40 -9.54 -0.02 0.40 16 7 C 0.06 -0.27 4.11 71.98 0.30 0.03 16 8 O -0.32 0.11 8.82 -92.64 -0.82 -0.71 16 9 C 0.15 0.22 6.62 22.50 0.15 0.37 16 10 C -0.19 0.21 9.04 22.37 0.20 0.41 16 11 C -0.06 -0.02 9.82 22.28 0.22 0.20 16 12 C -0.08 -0.30 6.32 22.33 0.14 -0.16 16 13 Cl -0.07 -0.31 28.95 -2.72 -0.08 -0.39 16 14 C -0.09 -0.41 8.44 22.28 0.19 -0.22 16 15 C -0.15 -0.53 5.28 -19.77 -0.10 -0.64 16 16 C -0.08 -0.23 2.33 71.24 0.17 -0.07 16 17 O -0.55 -2.48 12.65 -148.98 -1.89 -4.37 16 18 Si 1.02 3.27 25.75 68.60 1.77 5.03 16 19 H -0.26 -1.30 6.73 99.48 0.67 -0.63 16 20 H -0.27 -1.37 7.11 99.48 0.71 -0.67 16 21 H -0.24 -0.48 7.11 99.48 0.71 0.23 16 22 C -0.40 3.15 5.30 73.05 0.39 3.54 16 23 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 24 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 25 H 0.07 -0.38 7.96 -2.38 -0.02 -0.40 16 26 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 27 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 28 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 29 H 0.07 -0.23 8.04 -2.39 -0.02 -0.25 16 30 H 0.08 -0.28 8.04 -2.39 -0.02 -0.30 16 31 H 0.05 -0.01 8.12 -2.39 -0.02 -0.03 16 32 H 0.06 -0.20 8.04 -2.39 -0.02 -0.22 16 33 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 34 H 0.07 -0.46 7.58 -2.38 -0.02 -0.47 16 35 H 0.08 -0.51 7.68 -2.38 -0.02 -0.53 16 36 H 0.16 -1.01 6.30 -2.91 -0.02 -1.03 16 37 H 0.16 -0.57 8.06 -2.91 -0.02 -0.60 16 38 H 0.14 0.53 4.89 -2.91 -0.01 0.52 16 39 H 0.09 0.07 7.83 -2.39 -0.02 0.05 16 40 H 0.38 -0.02 8.61 -74.06 -0.64 -0.66 16 41 H 0.09 -0.80 8.03 -2.39 -0.02 -0.82 16 42 H 0.09 -0.80 8.06 -2.38 -0.02 -0.82 16 Total: 0.00 -8.48 353.66 5.16 -3.32 By element: Atomic # 1 Polarization: -9.95 SS G_CDS: 1.09 Total: -8.87 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: 4.17 Total: 13.44 kcal Atomic # 8 Polarization: -2.38 SS G_CDS: -2.70 Total: -5.08 kcal Atomic # 14 Polarization: -5.11 SS G_CDS: 2.68 Total: -2.43 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -0.08 Total: -0.39 kcal Total: -8.48 5.16 -3.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_508404_18051908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.724 kcal (2) G-P(sol) polarization free energy of solvation -8.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -3.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds