Wall clock time and date at job start Sat Mar 6 2021 00:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35979 * 117.00163 * 179.97438 * 3 2 1 5 5 C 1.38681 * 119.99823 * 359.72958 * 4 3 2 6 6 C 1.38157 * 119.99441 * 179.74448 * 5 4 3 7 7 C 1.38675 * 120.00494 * 0.50038 * 6 5 4 8 8 O 1.35982 * 120.00044 * 179.74845 * 7 6 5 9 9 C 1.42894 * 116.99942 * 0.02562 * 8 7 6 10 10 C 1.53000 * 109.47047 * 180.02562 * 9 8 7 11 11 C 1.53574 * 109.47702 * 66.45030 * 10 9 8 12 12 C 1.55146 * 111.29148 * 169.06299 * 11 10 9 13 13 Si 1.89332 * 101.34904 * 331.41497 * 12 11 10 14 14 C 1.86298 * 111.45654 * 120.85261 * 13 12 11 15 15 C 1.86301 * 111.45855 * 245.79727 * 13 12 11 16 16 C 1.55913 * 109.47576 * 186.50323 * 10 9 8 17 17 C 1.38718 * 119.99538 * 359.77061 * 7 6 5 18 18 C 1.50708 * 119.99887 * 179.97438 * 17 7 6 19 19 O 1.42896 * 109.47122 * 285.02538 * 18 17 7 20 20 Si 1.86294 * 109.47207 * 165.02124 * 18 17 7 21 21 H 1.48509 * 109.47165 * 60.00199 * 20 18 17 22 22 H 1.48494 * 109.47275 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47369 * 300.00388 * 20 18 17 24 24 C 1.38106 * 120.00535 * 359.97438 * 17 7 6 25 25 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 29 29 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 30 30 H 1.07999 * 119.99862 * 359.97438 * 5 4 3 31 31 H 1.07997 * 119.99391 * 180.22914 * 6 5 4 32 32 H 1.08998 * 109.47391 * 299.99822 * 9 8 7 33 33 H 1.08999 * 109.47117 * 60.00210 * 9 8 7 34 34 H 1.09002 * 109.46594 * 306.45098 * 10 9 8 35 35 H 1.09000 * 109.12293 * 289.55282 * 11 10 9 36 36 H 1.08997 * 109.11991 * 48.58191 * 11 10 9 37 37 H 1.09000 * 111.04703 * 89.43578 * 12 11 10 38 38 H 1.08999 * 111.04819 * 213.35451 * 12 11 10 39 39 H 1.09000 * 109.47234 * 60.00517 * 14 13 12 40 40 H 1.09000 * 109.47039 * 180.02562 * 14 13 12 41 41 H 1.08993 * 109.47826 * 300.00004 * 14 13 12 42 42 H 1.08998 * 109.46935 * 60.00156 * 15 13 12 43 43 H 1.09003 * 109.46582 * 180.02562 * 15 13 12 44 44 H 1.08994 * 109.47057 * 299.99969 * 15 13 12 45 45 H 1.09001 * 111.42234 * 316.88044 * 16 10 9 46 46 H 1.08994 * 111.43103 * 81.81797 * 16 10 9 47 47 H 1.09000 * 109.46860 * 45.02124 * 18 17 7 48 48 H 0.96696 * 114.00393 * 59.99418 * 19 18 17 49 49 H 1.07998 * 120.00544 * 180.02562 * 24 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3544 1.5254 0.0005 5 6 4.1992 0.4256 0.0067 6 6 5.5688 0.6067 0.0019 7 6 6.0989 1.8881 0.0014 8 8 7.4470 2.0662 0.0019 9 6 8.2569 0.8889 0.0023 10 6 9.7344 1.2863 0.0035 11 6 10.0776 1.9778 1.3311 12 6 11.6104 2.1537 1.4948 13 14 12.2631 0.6886 0.4887 14 6 13.3651 1.2545 -0.9027 15 6 13.1306 -0.5516 1.5750 16 6 10.6158 0.0111 -0.1626 17 6 5.2539 2.9882 0.0009 18 6 5.8299 4.3808 0.0010 19 8 6.3342 4.6877 1.3023 20 14 4.4995 5.6031 -0.4537 21 1 3.3954 5.5241 0.5363 22 1 5.0672 6.9752 -0.4543 23 1 3.9755 5.2842 -1.8061 24 6 3.8847 2.8073 0.0004 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.7863 -0.5724 0.0115 31 1 6.2266 -0.2499 0.0030 32 1 8.0392 0.2985 0.8923 33 1 8.0398 0.2983 -0.8877 34 1 9.9272 1.9705 -0.8230 35 1 9.6009 2.9577 1.3571 36 1 9.6971 1.3756 2.1561 37 1 11.9435 3.1003 1.0693 38 1 11.9041 2.0726 2.5414 39 1 14.2162 1.7990 -0.4938 40 1 13.7214 0.3878 -1.4595 41 1 12.8022 1.9077 -1.5694 42 1 12.4337 -0.9296 2.3230 43 1 13.4927 -1.3788 0.9644 44 1 13.9732 -0.0720 2.0729 45 1 10.2503 -0.8088 0.4557 46 1 10.6931 -0.2863 -1.2083 47 1 6.6403 4.4388 -0.7257 48 1 7.0318 4.0903 1.6048 49 1 3.2268 3.6637 -0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_7_508406_18051908.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:35:40 Heat of formation + Delta-G solvation = -142.939754 kcal Electronic energy + Delta-G solvation = -25823.920552 eV Core-core repulsion = 22260.292926 eV Total energy + Delta-G solvation = -3563.627626 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.172 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.63159 -40.16468 -38.43060 -37.08818 -36.42740 -32.83158 -32.62724 -30.84826 -29.73103 -29.28385 -28.56587 -27.31195 -26.78047 -24.54208 -24.24461 -23.11246 -22.01866 -20.76633 -19.38217 -18.74628 -17.97620 -17.57233 -17.10529 -16.89014 -16.27907 -15.91412 -15.76830 -15.35935 -15.29430 -14.87991 -14.58273 -14.31260 -14.18486 -14.06020 -14.01799 -13.96454 -13.62665 -13.57418 -13.48038 -13.36067 -13.28226 -13.14330 -12.97008 -12.61309 -12.31835 -12.24088 -12.10713 -12.06974 -11.79269 -11.62218 -11.47739 -11.23693 -11.04678 -10.94613 -10.92166 -10.62938 -10.40794 -9.99141 -8.68978 0.15747 0.46861 1.33013 1.50441 1.63839 1.68720 1.79661 1.81867 2.09541 2.17025 2.27698 2.49188 2.65899 3.60338 3.66727 3.74664 3.90811 3.93850 3.97256 4.00412 4.05943 4.12958 4.14206 4.25493 4.32736 4.38958 4.42217 4.48630 4.50722 4.59362 4.63507 4.64220 4.67067 4.67631 4.68313 4.69803 4.76909 4.82333 5.00178 5.07687 5.07955 5.13144 5.23368 5.28573 5.30943 5.35428 5.38997 5.45149 5.46304 5.54143 6.31619 6.51764 6.70955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.315 6.315 4 C 0.103 3.897 5 C -0.165 4.165 6 C -0.165 4.165 7 C 0.108 3.892 8 O -0.314 6.314 9 C 0.067 3.933 10 C -0.082 4.082 11 C -0.109 4.109 12 C -0.399 4.399 13 Si 0.969 3.031 14 C -0.443 4.443 15 C -0.443 4.443 16 C -0.394 4.394 17 C -0.106 4.106 18 C -0.081 4.081 19 O -0.536 6.536 20 Si 1.013 2.987 21 H -0.251 1.251 22 H -0.256 1.256 23 H -0.248 1.248 24 C -0.118 4.118 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.369 0.631 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.694 -4.148 -0.911 4.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.230 6.230 4 C 0.058 3.942 5 C -0.184 4.184 6 C -0.184 4.184 7 C 0.063 3.937 8 O -0.228 6.228 9 C -0.008 4.008 10 C -0.101 4.101 11 C -0.146 4.146 12 C -0.485 4.485 13 Si 1.166 2.834 14 C -0.551 4.551 15 C -0.551 4.551 16 C -0.479 4.479 17 C -0.107 4.107 18 C -0.189 4.189 19 O -0.342 6.342 20 Si 0.832 3.168 21 H -0.175 1.175 22 H -0.180 1.180 23 H -0.172 1.172 24 C -0.136 4.136 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.100 0.900 47 H 0.097 0.903 48 H 0.217 0.783 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.616 -2.794 -1.177 3.094 hybrid contribution 0.743 -1.601 0.164 1.772 sum 1.359 -4.395 -1.013 4.710 Atomic orbital electron populations 1.21785 0.92458 1.03065 1.03737 1.22809 0.96152 0.81769 1.01351 1.86099 1.18488 1.29437 1.88946 1.18724 0.82698 0.93550 0.99241 1.21087 0.93445 0.98349 1.05506 1.21060 0.95635 0.96090 1.05594 1.18601 0.82974 0.92783 0.99363 1.86038 1.13568 1.34306 1.88883 1.22988 0.90037 0.86367 1.01395 1.21670 0.91561 0.97344 0.99513 1.21711 0.95751 1.01119 0.96062 1.26504 1.00467 1.13083 1.08430 0.80489 0.67159 0.68019 0.67693 1.26022 1.09973 1.05972 1.13141 1.26019 1.07941 1.11344 1.09784 1.26809 1.15340 0.99483 1.06303 1.19395 0.91632 0.94980 1.04714 1.25190 1.06439 0.98377 0.88914 1.86686 1.58245 1.57442 1.31782 0.84493 0.75787 0.76742 0.79736 1.17463 1.17987 1.17155 1.20199 0.93602 0.95752 1.04050 0.91372 0.91376 0.90211 0.92006 0.92010 0.84973 0.84927 0.91949 0.91972 0.89770 0.91202 0.92007 0.90474 0.90337 0.91028 0.91190 0.91034 0.91067 0.91179 0.91084 0.90013 0.90031 0.90283 0.78327 0.84332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.18 10.28 37.16 0.38 0.56 16 2 C 0.05 -0.01 5.46 37.16 0.20 0.19 16 3 O -0.32 -0.94 10.14 -19.67 -0.20 -1.14 16 4 C 0.10 0.32 6.69 -39.24 -0.26 0.05 16 5 C -0.17 -0.25 9.03 -39.45 -0.36 -0.61 16 6 C -0.17 -0.21 9.03 -39.45 -0.36 -0.57 16 7 C 0.11 0.24 6.62 -39.24 -0.26 -0.02 16 8 O -0.31 -0.39 8.81 -19.68 -0.17 -0.56 16 9 C 0.07 -0.05 4.11 37.16 0.15 0.10 16 10 C -0.08 0.12 2.40 -88.77 -0.21 -0.09 16 11 C -0.11 0.12 5.21 -25.30 -0.13 -0.01 16 12 C -0.40 0.70 5.85 38.29 0.22 0.92 16 13 Si 0.97 -3.13 13.36 -169.99 -2.27 -5.40 16 14 C -0.44 0.90 8.65 101.05 0.87 1.77 16 15 C -0.44 0.94 8.65 101.05 0.87 1.81 16 16 C -0.39 1.02 5.29 38.71 0.20 1.22 16 17 C -0.11 -0.30 5.28 -104.49 -0.55 -0.85 16 18 C -0.08 -0.17 2.33 36.01 0.08 -0.09 16 19 O -0.54 -1.53 12.65 -35.23 -0.45 -1.97 16 20 Si 1.01 1.93 25.74 -169.99 -4.38 -2.45 16 21 H -0.25 -0.67 6.73 56.52 0.38 -0.29 16 22 H -0.26 -0.66 7.11 56.52 0.40 -0.26 16 23 H -0.25 -0.39 7.11 56.52 0.40 0.01 16 24 C -0.12 -0.39 8.59 -39.45 -0.34 -0.73 16 25 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 26 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 27 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 28 H 0.06 -0.07 7.67 -51.93 -0.40 -0.47 16 29 H 0.06 -0.07 7.65 -51.93 -0.40 -0.46 16 30 H 0.13 -0.08 6.29 -52.49 -0.33 -0.41 16 31 H 0.13 -0.10 6.29 -52.49 -0.33 -0.43 16 32 H 0.06 -0.08 7.59 -51.93 -0.39 -0.48 16 33 H 0.06 -0.07 7.66 -51.93 -0.40 -0.47 16 34 H 0.08 -0.10 8.13 -51.93 -0.42 -0.52 16 35 H 0.07 -0.02 8.12 -51.93 -0.42 -0.44 16 36 H 0.06 -0.07 8.04 -51.93 -0.42 -0.49 16 37 H 0.08 -0.11 8.04 -51.93 -0.42 -0.53 16 38 H 0.08 -0.13 8.04 -51.93 -0.42 -0.55 16 39 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 40 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 41 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 42 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 43 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 44 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 45 H 0.08 -0.23 8.03 -51.93 -0.42 -0.65 16 46 H 0.08 -0.23 8.06 -51.93 -0.42 -0.64 16 47 H 0.08 0.09 7.82 -51.93 -0.41 -0.32 16 48 H 0.37 0.28 8.60 45.56 0.39 0.67 16 49 H 0.14 0.38 4.89 -52.49 -0.26 0.12 16 LS Contribution 388.24 15.07 5.85 5.85 Total: 0.00 -4.40 388.24 -9.10 -13.50 By element: Atomic # 1 Polarization: -3.49 SS G_CDS: -8.02 Total: -11.51 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 0.53 Total: 3.68 kcal Atomic # 8 Polarization: -2.85 SS G_CDS: -0.82 Total: -3.67 kcal Atomic # 14 Polarization: -1.20 SS G_CDS: -6.65 Total: -7.85 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -4.40 -9.10 -13.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_508406_18051908.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.440 kcal (2) G-P(sol) polarization free energy of solvation -4.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds