Wall clock time and date at job start Sat Mar 6 2021 00:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35979 * 117.00163 * 179.97438 * 3 2 1 5 5 C 1.38681 * 119.99823 * 359.72958 * 4 3 2 6 6 C 1.38157 * 119.99441 * 179.74448 * 5 4 3 7 7 C 1.38675 * 120.00494 * 0.50038 * 6 5 4 8 8 O 1.35982 * 120.00044 * 179.74845 * 7 6 5 9 9 C 1.42894 * 116.99942 * 0.02562 * 8 7 6 10 10 C 1.53000 * 109.47047 * 180.02562 * 9 8 7 11 11 C 1.53574 * 109.47702 * 66.45030 * 10 9 8 12 12 C 1.55146 * 111.29148 * 169.06299 * 11 10 9 13 13 Si 1.89332 * 101.34904 * 331.41497 * 12 11 10 14 14 C 1.86298 * 111.45654 * 120.85261 * 13 12 11 15 15 C 1.86301 * 111.45855 * 245.79727 * 13 12 11 16 16 C 1.55913 * 109.47576 * 186.50323 * 10 9 8 17 17 C 1.38718 * 119.99538 * 359.77061 * 7 6 5 18 18 C 1.50708 * 119.99887 * 179.97438 * 17 7 6 19 19 O 1.42896 * 109.47122 * 285.02538 * 18 17 7 20 20 Si 1.86294 * 109.47207 * 165.02124 * 18 17 7 21 21 H 1.48509 * 109.47165 * 60.00199 * 20 18 17 22 22 H 1.48494 * 109.47275 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47369 * 300.00388 * 20 18 17 24 24 C 1.38106 * 120.00535 * 359.97438 * 17 7 6 25 25 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 29 29 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 30 30 H 1.07999 * 119.99862 * 359.97438 * 5 4 3 31 31 H 1.07997 * 119.99391 * 180.22914 * 6 5 4 32 32 H 1.08998 * 109.47391 * 299.99822 * 9 8 7 33 33 H 1.08999 * 109.47117 * 60.00210 * 9 8 7 34 34 H 1.09002 * 109.46594 * 306.45098 * 10 9 8 35 35 H 1.09000 * 109.12293 * 289.55282 * 11 10 9 36 36 H 1.08997 * 109.11991 * 48.58191 * 11 10 9 37 37 H 1.09000 * 111.04703 * 89.43578 * 12 11 10 38 38 H 1.08999 * 111.04819 * 213.35451 * 12 11 10 39 39 H 1.09000 * 109.47234 * 60.00517 * 14 13 12 40 40 H 1.09000 * 109.47039 * 180.02562 * 14 13 12 41 41 H 1.08993 * 109.47826 * 300.00004 * 14 13 12 42 42 H 1.08998 * 109.46935 * 60.00156 * 15 13 12 43 43 H 1.09003 * 109.46582 * 180.02562 * 15 13 12 44 44 H 1.08994 * 109.47057 * 299.99969 * 15 13 12 45 45 H 1.09001 * 111.42234 * 316.88044 * 16 10 9 46 46 H 1.08994 * 111.43103 * 81.81797 * 16 10 9 47 47 H 1.09000 * 109.46860 * 45.02124 * 18 17 7 48 48 H 0.96696 * 114.00393 * 59.99418 * 19 18 17 49 49 H 1.07998 * 120.00544 * 180.02562 * 24 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3544 1.5254 0.0005 5 6 4.1992 0.4256 0.0067 6 6 5.5688 0.6067 0.0019 7 6 6.0989 1.8881 0.0014 8 8 7.4470 2.0662 0.0019 9 6 8.2569 0.8889 0.0023 10 6 9.7344 1.2863 0.0035 11 6 10.0776 1.9778 1.3311 12 6 11.6104 2.1537 1.4948 13 14 12.2631 0.6886 0.4887 14 6 13.3651 1.2545 -0.9027 15 6 13.1306 -0.5516 1.5750 16 6 10.6158 0.0111 -0.1626 17 6 5.2539 2.9882 0.0009 18 6 5.8299 4.3808 0.0010 19 8 6.3342 4.6877 1.3023 20 14 4.4995 5.6031 -0.4537 21 1 3.3954 5.5241 0.5363 22 1 5.0672 6.9752 -0.4543 23 1 3.9755 5.2842 -1.8061 24 6 3.8847 2.8073 0.0004 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.7863 -0.5724 0.0115 31 1 6.2266 -0.2499 0.0030 32 1 8.0392 0.2985 0.8923 33 1 8.0398 0.2983 -0.8877 34 1 9.9272 1.9705 -0.8230 35 1 9.6009 2.9577 1.3571 36 1 9.6971 1.3756 2.1561 37 1 11.9435 3.1003 1.0693 38 1 11.9041 2.0726 2.5414 39 1 14.2162 1.7990 -0.4938 40 1 13.7214 0.3878 -1.4595 41 1 12.8022 1.9077 -1.5694 42 1 12.4337 -0.9296 2.3230 43 1 13.4927 -1.3788 0.9644 44 1 13.9732 -0.0720 2.0729 45 1 10.2503 -0.8088 0.4557 46 1 10.6931 -0.2863 -1.2083 47 1 6.6403 4.4388 -0.7257 48 1 7.0318 4.0903 1.6048 49 1 3.2268 3.6637 -0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_508406_18051908.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:35:39 Heat of formation + Delta-G solvation = -133.044082 kcal Electronic energy + Delta-G solvation = -25823.491444 eV Core-core repulsion = 22260.292926 eV Total energy + Delta-G solvation = -3563.198517 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.172 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.71736 -40.22323 -38.49826 -37.19757 -36.39042 -32.87776 -32.66257 -30.75283 -29.77150 -29.09882 -28.37216 -27.23286 -26.87387 -24.51971 -24.18270 -23.15441 -22.08388 -20.65674 -19.47750 -18.80324 -18.12376 -17.65615 -17.13546 -16.86375 -16.39691 -15.90059 -15.73349 -15.46328 -15.37390 -14.93050 -14.56839 -14.29757 -14.14881 -14.11668 -13.83574 -13.78849 -13.50190 -13.44611 -13.39907 -13.25846 -13.19608 -13.12526 -12.89899 -12.52232 -12.29331 -12.21288 -12.18584 -12.06885 -11.81638 -11.71518 -11.38468 -11.22134 -11.16585 -11.08411 -10.75666 -10.43632 -10.24522 -10.12136 -8.79952 0.03348 0.33750 1.16302 1.46264 1.49854 1.72049 1.90934 2.02521 2.04165 2.15590 2.26678 2.53407 2.66682 3.51889 3.62620 3.83562 3.87691 3.98605 4.02666 4.05069 4.06481 4.12153 4.14645 4.28431 4.32023 4.35765 4.45110 4.57971 4.61671 4.66611 4.74683 4.78148 4.78721 4.81693 4.84740 4.85868 4.86409 4.90795 5.01814 5.11940 5.16018 5.16274 5.24809 5.25469 5.39045 5.42476 5.52519 5.56428 5.61991 5.65108 6.27156 6.45302 6.61344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.046 3.954 3 O -0.336 6.336 4 C 0.088 3.912 5 C -0.163 4.163 6 C -0.165 4.165 7 C 0.102 3.898 8 O -0.320 6.320 9 C 0.061 3.939 10 C -0.082 4.082 11 C -0.110 4.110 12 C -0.415 4.415 13 Si 1.039 2.961 14 C -0.459 4.459 15 C -0.456 4.456 16 C -0.398 4.398 17 C -0.118 4.118 18 C -0.081 4.081 19 O -0.549 6.549 20 Si 1.031 2.969 21 H -0.267 1.267 22 H -0.266 1.266 23 H -0.244 1.244 24 C -0.137 4.137 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.376 0.624 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.206 -5.800 -1.198 6.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.251 6.251 4 C 0.043 3.957 5 C -0.182 4.182 6 C -0.184 4.184 7 C 0.057 3.943 8 O -0.235 6.235 9 C -0.013 4.013 10 C -0.100 4.100 11 C -0.148 4.148 12 C -0.500 4.500 13 Si 1.232 2.768 14 C -0.566 4.566 15 C -0.564 4.564 16 C -0.483 4.483 17 C -0.119 4.119 18 C -0.190 4.190 19 O -0.355 6.355 20 Si 0.853 3.147 21 H -0.192 1.192 22 H -0.191 1.191 23 H -0.167 1.167 24 C -0.156 4.156 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.117 0.883 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.172 0.828 31 H 0.173 0.827 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.107 0.893 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.225 0.775 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.136 -4.445 -1.466 4.816 hybrid contribution 0.600 -1.096 0.279 1.281 sum 1.736 -5.541 -1.188 5.927 Atomic orbital electron populations 1.21816 0.91907 1.04115 1.03096 1.23051 0.96660 0.80715 1.02390 1.86077 1.18582 1.31337 1.89081 1.18900 0.83070 0.93936 0.99818 1.21345 0.93437 0.98896 1.04530 1.21339 0.95907 0.96434 1.04681 1.18710 0.83385 0.93010 0.99210 1.86042 1.13223 1.35444 1.88749 1.23183 0.90023 0.86006 1.02137 1.21675 0.91421 0.97912 0.99033 1.21720 0.96095 1.00552 0.96425 1.26705 1.00324 1.14087 1.08870 0.79417 0.65743 0.65873 0.65720 1.26217 1.10357 1.06079 1.13914 1.26185 1.08111 1.11889 1.10182 1.26896 1.15312 0.99116 1.06982 1.19462 0.91658 0.95473 1.05316 1.25203 1.06674 0.98274 0.88806 1.86653 1.58679 1.57945 1.32261 0.84239 0.75092 0.75967 0.79438 1.19160 1.19086 1.16678 1.20316 0.93982 0.96142 1.05117 0.92074 0.91950 0.88281 0.90830 0.90984 0.82826 0.82743 0.91136 0.91180 0.90158 0.92471 0.91933 0.90984 0.90498 0.91308 0.91005 0.91296 0.91047 0.91010 0.91351 0.89268 0.89383 0.89386 0.77466 0.84759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.38 10.28 71.98 0.74 1.12 16 2 C 0.05 -0.03 5.46 71.98 0.39 0.36 16 3 O -0.34 -2.25 10.14 -93.32 -0.95 -3.19 16 4 C 0.09 0.59 6.69 22.49 0.15 0.74 16 5 C -0.16 -0.39 9.03 22.36 0.20 -0.19 16 6 C -0.17 -0.28 9.03 22.35 0.20 -0.08 16 7 C 0.10 0.45 6.62 22.49 0.15 0.60 16 8 O -0.32 -0.76 8.81 -93.35 -0.82 -1.58 16 9 C 0.06 -0.14 4.11 71.98 0.30 0.16 16 10 C -0.08 0.28 2.40 -9.59 -0.02 0.26 16 11 C -0.11 0.23 5.21 31.52 0.16 0.39 16 12 C -0.42 1.39 5.85 72.72 0.43 1.82 16 13 Si 1.04 -7.40 13.36 68.60 0.92 -6.49 16 14 C -0.46 2.02 8.65 113.37 0.98 3.00 16 15 C -0.46 2.27 8.65 113.37 0.98 3.25 16 16 C -0.40 2.58 5.29 72.99 0.39 2.96 16 17 C -0.12 -0.77 5.28 -19.78 -0.10 -0.88 16 18 C -0.08 -0.43 2.33 71.24 0.17 -0.27 16 19 O -0.55 -3.74 12.65 -148.98 -1.89 -5.62 16 20 Si 1.03 5.35 25.74 68.60 1.77 7.12 16 21 H -0.27 -2.00 6.73 99.48 0.67 -1.33 16 22 H -0.27 -1.73 7.11 99.48 0.71 -1.03 16 23 H -0.24 -1.00 7.11 99.48 0.71 -0.30 16 24 C -0.14 -1.09 8.59 22.35 0.19 -0.90 16 25 H 0.06 -0.07 8.14 -2.39 -0.02 -0.08 16 26 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 27 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 28 H 0.07 -0.24 7.67 -2.39 -0.02 -0.26 16 29 H 0.07 -0.21 7.65 -2.39 -0.02 -0.23 16 30 H 0.15 -0.42 6.29 -2.91 -0.02 -0.44 16 31 H 0.16 -0.52 6.29 -2.91 -0.02 -0.53 16 32 H 0.07 -0.27 7.59 -2.39 -0.02 -0.29 16 33 H 0.07 -0.26 7.66 -2.39 -0.02 -0.28 16 34 H 0.08 -0.20 8.13 -2.39 -0.02 -0.22 16 35 H 0.06 0.02 8.12 -2.39 -0.02 0.00 16 36 H 0.06 -0.15 8.04 -2.39 -0.02 -0.17 16 37 H 0.07 -0.17 8.04 -2.39 -0.02 -0.19 16 38 H 0.08 -0.24 8.04 -2.39 -0.02 -0.26 16 39 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 40 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 41 H 0.07 -0.26 7.96 -2.39 -0.02 -0.27 16 42 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 43 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 44 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 45 H 0.09 -0.67 8.03 -2.39 -0.02 -0.69 16 46 H 0.09 -0.64 8.06 -2.39 -0.02 -0.66 16 47 H 0.09 0.26 7.82 -2.39 -0.02 0.24 16 48 H 0.38 0.98 8.60 -74.06 -0.64 0.35 16 49 H 0.13 1.02 4.89 -2.91 -0.01 1.00 16 Total: 0.00 -10.83 388.24 5.33 -5.50 By element: Atomic # 1 Polarization: -9.08 SS G_CDS: 1.00 Total: -8.08 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 5.30 Total: 12.35 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -3.65 Total: -10.40 kcal Atomic # 14 Polarization: -2.06 SS G_CDS: 2.68 Total: 0.63 kcal Total: -10.83 5.33 -5.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_508406_18051908.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.542 kcal (2) G-P(sol) polarization free energy of solvation -10.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds