Wall clock time and date at job start Sat Mar 6 2021 00:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35898 * 117.00188 * 2 1 4 4 C 1.38750 * 120.02648 * 0.02562 * 3 2 1 5 5 C 1.38196 * 120.05647 * 180.02562 * 4 3 2 6 6 C 1.38162 * 120.10846 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.97364 * 179.97438 * 6 5 4 8 8 O 1.42901 * 109.47131 * 105.02335 * 7 6 5 9 9 Si 1.86294 * 109.47059 * 345.02297 * 7 6 5 10 10 H 1.48505 * 109.46911 * 179.97438 * 9 7 6 11 11 H 1.48494 * 109.47320 * 300.00004 * 9 7 6 12 12 H 1.48496 * 109.47342 * 60.00125 * 9 7 6 13 13 C 1.38796 * 120.05156 * 0.02562 * 6 5 4 14 14 O 1.35900 * 120.02677 * 179.97438 * 13 6 5 15 15 C 1.42901 * 117.00200 * 179.97438 * 14 13 6 16 16 C 1.52995 * 109.47074 * 179.97438 * 15 14 13 17 17 C 1.53566 * 109.47643 * 293.54788 * 16 15 14 18 18 C 1.55147 * 111.29010 * 190.93802 * 17 16 15 19 19 Si 1.89333 * 101.34989 * 28.58791 * 18 17 16 20 20 C 1.86301 * 111.45813 * 114.13512 * 19 18 17 21 21 C 1.86297 * 111.45926 * 239.08100 * 19 18 17 22 22 C 1.56066 * 109.48114 * 173.43596 * 16 15 14 23 23 C 1.38612 * 119.94445 * 0.22767 * 13 6 5 24 24 H 1.09006 * 109.46514 * 299.99654 * 1 2 3 25 25 H 1.08993 * 109.47320 * 59.99395 * 1 2 3 26 26 H 1.08993 * 109.46925 * 179.97438 * 1 2 3 27 27 H 1.07998 * 119.97305 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.94895 * 179.97438 * 5 4 3 29 29 H 1.08998 * 109.46789 * 225.02182 * 7 6 5 30 30 H 0.96698 * 113.99759 * 179.97438 * 8 7 6 31 31 H 1.09007 * 109.46885 * 60.00180 * 15 14 13 32 32 H 1.09005 * 109.47062 * 300.00380 * 15 14 13 33 33 H 1.09004 * 109.46872 * 53.55317 * 16 15 14 34 34 H 1.09003 * 109.12206 * 70.45930 * 17 16 15 35 35 H 1.08996 * 109.12221 * 311.42400 * 17 16 15 36 36 H 1.09002 * 111.04815 * 270.56954 * 18 17 16 37 37 H 1.08999 * 111.04827 * 146.61077 * 18 17 16 38 38 H 1.09002 * 109.47148 * 185.06678 * 20 19 18 39 39 H 1.09001 * 109.46900 * 65.06830 * 20 19 18 40 40 H 1.09004 * 109.47198 * 305.06808 * 20 19 18 41 41 H 1.08995 * 109.47233 * 294.93123 * 21 19 18 42 42 H 1.08997 * 109.47080 * 54.93469 * 21 19 18 43 43 H 1.08998 * 109.47258 * 174.93080 * 21 19 18 44 44 H 1.08996 * 111.41269 * 43.11689 * 22 16 15 45 45 H 1.09006 * 111.49251 * 278.12945 * 22 16 15 46 46 H 1.08011 * 120.05207 * 179.74490 * 23 13 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2909 2.3749 0.0005 5 6 1.9177 3.6065 0.0000 6 6 3.2973 3.6821 -0.0005 7 6 3.9776 5.0268 -0.0017 8 8 4.5047 5.2950 1.2992 9 14 2.7438 6.3465 -0.4561 10 1 3.4141 7.6717 -0.4566 11 1 2.1960 6.0678 -1.8079 12 1 1.6377 6.3523 0.5347 13 6 4.0570 2.5206 -0.0011 14 8 5.4140 2.5955 -0.0021 15 6 6.1320 1.3600 -0.0021 16 6 7.6354 1.6439 -0.0040 17 6 8.0297 2.3063 -1.3321 18 6 9.5713 2.3649 -1.4965 19 14 10.1111 0.8551 -0.4897 20 6 10.8794 -0.4491 -1.5758 21 6 11.2550 1.3360 0.8998 22 6 8.4182 0.3043 0.1643 23 6 3.4306 1.2841 -0.0058 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2124 2.3184 0.0014 28 1 1.3283 4.5115 0.0000 29 1 4.7895 5.0225 -0.7289 30 1 4.9579 6.1461 1.3720 31 1 5.8696 0.7872 -0.8917 32 1 5.8709 0.7881 0.8884 33 1 7.8800 2.3118 0.8220 34 1 7.6290 3.3196 -1.3585 35 1 7.6041 1.7343 -2.1566 36 1 9.9756 3.2837 -1.0717 37 1 9.8576 2.2604 -2.5430 38 1 11.0952 -1.3365 -0.9808 39 1 11.8050 -0.0655 -2.0050 40 1 10.1874 -0.7085 -2.3772 41 1 12.1830 1.7309 0.4863 42 1 10.7781 2.0985 1.5156 43 1 11.4732 0.4599 1.5105 44 1 7.9911 -0.4864 -0.4526 45 1 8.4743 0.0032 1.2104 46 1 4.0202 0.3791 -0.0104 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_575374_18051908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:45:18 Heat of formation + Delta-G solvation = -124.590009 kcal Electronic energy + Delta-G solvation = -24055.872228 eV Core-core repulsion = 20648.577926 eV Total energy + Delta-G solvation = -3407.294302 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.156 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.69379 -40.14605 -38.52150 -37.16909 -36.44871 -32.40433 -31.34896 -30.41826 -29.10695 -28.45404 -28.37110 -27.24918 -26.06341 -24.30121 -23.16857 -22.29916 -20.70194 -19.80339 -18.44979 -17.98717 -17.41358 -17.02193 -16.87048 -16.62448 -16.06208 -15.74899 -15.71520 -15.22897 -14.93534 -14.50270 -14.27772 -13.86870 -13.80487 -13.78888 -13.70862 -13.55196 -13.42583 -13.24164 -13.18997 -13.14773 -12.68033 -12.45629 -12.36344 -12.19239 -12.16482 -12.02247 -11.73635 -11.63664 -11.52562 -11.34289 -10.75935 -10.45316 -10.26792 -10.22203 -9.71190 -9.09937 0.15545 0.29800 1.17084 1.45774 1.51008 1.69511 1.89009 2.01511 2.03344 2.10312 2.32578 2.52321 2.65352 3.54846 3.65499 3.77931 3.93381 3.98534 4.00123 4.07645 4.16007 4.29842 4.30858 4.35728 4.39650 4.41972 4.54435 4.58650 4.64387 4.70496 4.71984 4.76823 4.82289 4.84987 4.86046 4.86723 4.99832 5.12247 5.19872 5.22803 5.26416 5.35367 5.44345 5.51450 5.54412 5.61132 5.65293 6.21962 6.38040 6.86645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.332 6.332 3 C 0.162 3.838 4 C -0.243 4.243 5 C -0.053 4.053 6 C -0.167 4.167 7 C -0.071 4.071 8 O -0.562 6.562 9 Si 0.982 3.018 10 H -0.254 1.254 11 H -0.256 1.256 12 H -0.258 1.258 13 C 0.183 3.817 14 O -0.308 6.308 15 C 0.058 3.942 16 C -0.081 4.081 17 C -0.109 4.109 18 C -0.413 4.413 19 Si 1.042 2.958 20 C -0.454 4.454 21 C -0.456 4.456 22 C -0.403 4.403 23 C -0.259 4.259 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.118 0.882 27 H 0.156 0.844 28 H 0.146 0.854 29 H 0.075 0.925 30 H 0.392 0.608 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.143 -0.534 -1.209 1.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.245 6.245 3 C 0.116 3.884 4 C -0.262 4.262 5 C -0.070 4.070 6 C -0.168 4.168 7 C -0.180 4.180 8 O -0.370 6.370 9 Si 0.805 3.195 10 H -0.178 1.178 11 H -0.180 1.180 12 H -0.183 1.183 13 C 0.136 3.864 14 O -0.221 6.221 15 C -0.016 4.016 16 C -0.099 4.099 17 C -0.147 4.147 18 C -0.497 4.497 19 Si 1.235 2.765 20 C -0.562 4.562 21 C -0.564 4.564 22 C -0.488 4.488 23 C -0.278 4.278 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.136 0.864 27 H 0.174 0.826 28 H 0.163 0.837 29 H 0.093 0.907 30 H 0.242 0.758 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.465 -0.525 -1.308 1.484 hybrid contribution 0.059 0.061 0.080 0.117 sum -0.406 -0.463 -1.228 1.374 Atomic orbital electron populations 1.23402 0.76005 1.05740 1.02619 1.86053 1.23812 1.26631 1.88049 1.18864 0.91674 0.84909 0.92996 1.21326 1.01486 0.91240 1.12133 1.20931 0.92700 0.98582 0.94831 1.18839 0.92893 0.93080 1.11948 1.24652 1.04520 1.00084 0.88776 1.86490 1.77356 1.43730 1.29416 0.85297 0.77990 0.76540 0.79719 1.17758 1.18033 1.18271 1.18556 0.83089 0.92451 0.92314 1.86141 1.14385 1.34126 1.87463 1.23220 0.92189 0.84374 1.01842 1.21704 0.91007 0.98066 0.99162 1.21701 0.96254 1.00530 0.96205 1.26693 0.98807 1.15166 1.09058 0.79400 0.65349 0.65903 0.65854 1.26154 1.07353 1.12568 1.10097 1.26183 1.10779 1.05671 1.13742 1.27004 1.17222 0.97598 1.06934 1.20569 0.93285 0.97791 1.16170 0.91468 0.91269 0.86366 0.82650 0.83672 0.90688 0.75824 0.91314 0.91738 0.90232 0.92797 0.92070 0.90718 0.90198 0.90940 0.91068 0.91114 0.91007 0.91359 0.90948 0.89516 0.89560 0.83988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 9.81 113.37 1.11 1.07 16 2 O -0.33 -1.93 10.50 -92.40 -0.97 -2.90 16 3 C 0.16 1.18 6.68 22.49 0.15 1.33 16 4 C -0.24 -1.11 9.04 22.38 0.20 -0.91 16 5 C -0.05 -0.29 8.65 22.24 0.19 -0.10 16 6 C -0.17 -1.34 5.31 -19.75 -0.10 -1.44 16 7 C -0.07 -0.30 2.37 71.23 0.17 -0.14 16 8 O -0.56 -2.91 12.86 -148.98 -1.92 -4.82 16 9 Si 0.98 0.84 25.49 68.60 1.75 2.59 16 10 H -0.25 -0.07 7.11 99.48 0.71 0.64 16 11 H -0.26 -0.48 7.11 99.48 0.71 0.23 16 12 H -0.26 -0.57 6.73 99.48 0.67 0.10 16 13 C 0.18 1.70 6.66 22.49 0.15 1.85 16 14 O -0.31 -2.56 9.24 -92.42 -0.85 -3.42 16 15 C 0.06 0.20 4.11 71.98 0.30 0.50 16 16 C -0.08 -0.06 2.40 -9.54 -0.02 -0.08 16 17 C -0.11 -0.11 5.21 31.52 0.16 0.06 16 18 C -0.41 0.77 5.85 72.72 0.43 1.19 16 19 Si 1.04 -5.66 13.35 68.60 0.92 -4.74 16 20 C -0.45 1.77 8.65 113.37 0.98 2.75 16 21 C -0.46 1.51 8.65 113.37 0.98 2.49 16 22 C -0.40 1.24 5.30 73.05 0.39 1.63 16 23 C -0.26 -2.15 8.97 22.46 0.20 -1.95 16 24 H 0.07 -0.28 7.66 -2.38 -0.02 -0.30 16 25 H 0.07 -0.32 7.66 -2.39 -0.02 -0.33 16 26 H 0.12 -0.71 8.14 -2.39 -0.02 -0.73 16 27 H 0.16 -0.16 6.29 -2.91 -0.02 -0.18 16 28 H 0.15 0.24 4.88 -2.91 -0.01 0.23 16 29 H 0.08 0.23 7.82 -2.39 -0.02 0.21 16 30 H 0.39 -1.59 8.74 -74.06 -0.65 -2.24 16 31 H 0.07 0.14 7.58 -2.38 -0.02 0.12 16 32 H 0.06 0.20 7.67 -2.38 -0.02 0.18 16 33 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.05 0.20 8.12 -2.39 -0.02 0.18 16 35 H 0.06 0.05 8.04 -2.39 -0.02 0.03 16 36 H 0.07 -0.11 8.04 -2.39 -0.02 -0.13 16 37 H 0.08 -0.18 8.04 -2.39 -0.02 -0.20 16 38 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 39 H 0.07 -0.27 7.96 -2.39 -0.02 -0.28 16 40 H 0.07 -0.25 7.96 -2.38 -0.02 -0.26 16 41 H 0.07 -0.24 7.96 -2.39 -0.02 -0.25 16 42 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 43 H 0.07 -0.26 7.96 -2.39 -0.02 -0.27 16 44 H 0.09 -0.33 8.03 -2.39 -0.02 -0.35 16 45 H 0.09 -0.32 8.06 -2.38 -0.02 -0.34 16 46 H 0.14 0.87 6.30 -2.90 -0.02 0.85 16 Total: 0.00 -13.74 367.02 5.23 -8.50 By element: Atomic # 1 Polarization: -4.50 SS G_CDS: 1.03 Total: -3.47 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 5.28 Total: 8.26 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -3.74 Total: -11.14 kcal Atomic # 14 Polarization: -4.82 SS G_CDS: 2.66 Total: -2.15 kcal Total: -13.74 5.23 -8.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_575374_18051908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.087 kcal (2) G-P(sol) polarization free energy of solvation -13.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds