Wall clock time and date at job start Sat Mar 6 2021 00:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 C 1.52995 * 109.47643 * 190.93802 * 6 5 4 8 8 O 1.42901 * 109.47074 * 293.54788 * 7 6 5 9 9 C 1.35961 * 117.00240 * 179.97438 * 8 7 6 10 10 C 1.38616 * 120.06134 * 359.72387 * 9 8 7 11 11 C 1.38219 * 119.97216 * 179.74975 * 10 9 8 12 12 C 1.38228 * 120.09270 * 0.52357 * 11 10 9 13 13 C 1.50695 * 119.93687 * 179.72742 * 12 11 10 14 14 O 1.42895 * 109.47377 * 120.02459 * 13 12 11 15 15 Si 1.86302 * 109.47315 * 0.02562 * 13 12 11 16 16 H 1.48500 * 109.46949 * 60.00028 * 15 13 12 17 17 H 1.48497 * 109.47059 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46878 * 300.00023 * 15 13 12 19 19 C 1.38306 * 120.12234 * 359.74917 * 12 11 10 20 20 C 1.38284 * 120.03000 * 359.97438 * 19 12 11 21 21 F 1.35101 * 120.04684 * 179.97438 * 20 19 12 22 22 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 23 23 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 24 24 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 25 25 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 27 27 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 29 29 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 30 30 H 1.08999 * 111.05229 * 356.11516 * 4 2 1 31 31 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 32 32 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 33 33 H 1.09004 * 109.47418 * 70.93608 * 6 5 4 34 34 H 1.09007 * 109.46916 * 53.54343 * 7 6 5 35 35 H 1.09005 * 109.47687 * 173.54545 * 7 6 5 36 36 H 1.08004 * 120.01701 * 0.02562 * 10 9 8 37 37 H 1.07998 * 119.95869 * 180.25220 * 11 10 9 38 38 H 1.09008 * 109.46840 * 240.02349 * 13 12 11 39 39 H 0.96700 * 114.00228 * 300.00225 * 14 13 12 40 40 H 1.07999 * 119.98320 * 179.97438 * 19 12 11 41 41 H 1.08996 * 111.41269 * 283.05303 * 22 6 5 42 42 H 1.09006 * 111.49251 * 158.06559 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1417 -2.9771 -1.5067 8 8 5.3027 -3.5593 -0.9107 9 6 5.8107 -4.6711 -1.5062 10 6 5.2012 -5.1935 -2.6363 11 6 5.7222 -6.3207 -3.2431 12 6 6.8441 -6.9345 -2.7185 13 6 7.4055 -8.1669 -3.3794 14 8 8.7497 -7.9149 -3.7936 15 14 6.3691 -8.6016 -4.8653 16 1 6.3867 -7.4717 -5.8287 17 1 6.9221 -9.8164 -5.5161 18 1 4.9723 -8.8635 -4.4348 19 6 7.4520 -6.4199 -1.5878 20 6 6.9384 -5.2890 -0.9798 21 9 7.5317 -4.7863 0.1250 22 6 2.5568 -1.0142 -1.4447 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 2.1907 2.2612 0.8899 27 1 3.6274 1.7027 -0.0005 28 1 2.1908 2.2612 -0.8900 29 1 3.2797 -0.4330 2.0151 30 1 1.7543 -1.3786 2.0840 31 1 4.1055 -2.5196 1.2701 32 1 2.5407 -3.0054 0.5873 33 1 4.5675 -1.0680 -0.6042 34 1 3.3305 -3.7052 -1.5088 35 1 4.3683 -2.6826 -2.5315 36 1 4.3222 -4.7173 -3.0450 37 1 5.2495 -6.7251 -4.1260 38 1 7.3927 -8.9963 -2.6722 39 1 8.8370 -7.1877 -4.4250 40 1 8.3282 -6.9014 -1.1795 41 1 1.8198 -1.7216 -1.8246 42 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_7834706_18051908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:55:53 Heat of formation + Delta-G solvation = -134.728272 kcal Electronic energy + Delta-G solvation = -21891.382259 eV Core-core repulsion = 18488.414164 eV Total energy + Delta-G solvation = -3402.968095 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.92908 -41.29605 -39.48331 -37.43637 -36.53735 -31.96172 -31.88743 -30.58104 -29.11964 -28.38305 -27.63374 -26.13704 -24.57273 -23.52577 -22.56314 -20.79407 -19.52531 -18.55662 -18.07388 -17.46302 -17.31265 -16.52715 -16.24658 -16.04633 -15.79016 -15.64143 -15.45060 -15.03270 -14.49055 -14.33479 -13.94590 -13.85803 -13.78890 -13.53821 -13.49236 -13.37278 -13.19877 -13.11904 -12.77155 -12.56846 -12.27052 -12.20541 -12.15573 -12.04417 -11.69904 -11.56607 -11.39228 -10.77333 -10.47418 -10.44985 -10.29622 -10.06831 -9.29417 -0.04198 0.04215 1.18173 1.49844 1.54360 1.66752 1.94598 1.99903 2.00356 2.08298 2.35835 2.63253 3.09885 3.46690 3.55316 3.69642 3.77879 3.90441 3.98291 4.04244 4.08184 4.31669 4.41571 4.52720 4.54318 4.60351 4.67713 4.72526 4.79104 4.80853 4.82645 4.85354 4.86510 4.87970 4.98552 5.10027 5.19588 5.20333 5.31538 5.44730 5.49734 5.55635 5.59894 5.64529 6.21970 6.71143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.043 2.957 3 C -0.459 4.459 4 C -0.420 4.420 5 C -0.111 4.111 6 C -0.085 4.085 7 C 0.057 3.943 8 O -0.327 6.327 9 C 0.093 3.907 10 C -0.175 4.175 11 C -0.091 4.091 12 C -0.130 4.130 13 C -0.080 4.080 14 O -0.554 6.554 15 Si 0.986 3.014 16 H -0.246 1.246 17 H -0.277 1.277 18 H -0.251 1.251 19 C -0.089 4.089 20 C 0.038 3.962 21 F -0.149 7.149 22 C -0.395 4.395 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.165 0.835 37 H 0.151 0.849 38 H 0.126 0.874 39 H 0.390 0.610 40 H 0.150 0.850 41 H 0.094 0.906 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.671 1.109 -4.153 6.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.236 2.764 3 C -0.566 4.566 4 C -0.503 4.503 5 C -0.149 4.149 6 C -0.103 4.103 7 C -0.017 4.017 8 O -0.241 6.241 9 C 0.047 3.953 10 C -0.193 4.193 11 C -0.109 4.109 12 C -0.131 4.131 13 C -0.189 4.189 14 O -0.361 6.361 15 Si 0.809 3.191 16 H -0.169 1.169 17 H -0.202 1.202 18 H -0.175 1.175 19 C -0.108 4.108 20 C 0.018 3.982 21 F -0.128 7.128 22 C -0.480 4.480 23 H 0.093 0.907 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.183 0.817 37 H 0.168 0.832 38 H 0.144 0.856 39 H 0.239 0.761 40 H 0.167 0.833 41 H 0.112 0.888 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.985 0.579 -4.236 6.567 hybrid contribution 0.573 0.522 0.613 0.988 sum -4.412 1.101 -3.623 5.814 Atomic orbital electron populations 1.26142 1.20604 1.04699 1.04649 0.79384 0.65956 0.65536 0.65535 1.26212 1.06544 1.19146 1.04665 1.26779 1.05491 1.06635 1.11428 1.21723 0.99833 0.98748 0.94583 1.21725 0.99186 0.94938 0.94475 1.23343 0.85131 0.95473 0.97799 1.86157 1.45515 1.38779 1.53689 1.19232 0.93426 0.88688 0.93975 1.21367 1.03034 0.99135 0.95807 1.21181 0.95169 0.94689 0.99818 1.20237 0.97061 0.99285 0.96510 1.25102 0.89623 0.96755 1.07441 1.86497 1.25120 1.58024 1.66441 0.85176 0.77799 0.80101 0.76019 1.16895 1.20220 1.17467 1.20959 1.00682 0.93567 0.95601 1.17400 0.95022 0.97556 0.88193 1.91467 1.83141 1.87169 1.51001 1.26916 1.02005 1.08064 1.11021 0.90703 0.91314 0.90969 0.91263 0.91514 0.90708 0.91279 0.90379 0.93805 0.91725 0.90541 0.90359 0.90173 0.81748 0.83216 0.85637 0.76080 0.83252 0.88778 0.88999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.32 8.65 113.37 0.98 3.30 16 2 Si 1.04 -6.77 13.35 68.60 0.92 -5.85 16 3 C -0.46 1.78 8.65 113.37 0.98 2.76 16 4 C -0.42 0.59 5.85 72.72 0.43 1.01 16 5 C -0.11 -0.11 5.21 31.52 0.16 0.05 16 6 C -0.08 0.10 2.40 -9.54 -0.02 0.08 16 7 C 0.06 -0.04 4.11 71.98 0.30 0.26 16 8 O -0.33 -2.17 9.78 -93.11 -0.91 -3.08 16 9 C 0.09 0.53 6.69 22.53 0.15 0.68 16 10 C -0.17 0.03 9.04 22.36 0.20 0.24 16 11 C -0.09 0.15 8.66 22.26 0.19 0.34 16 12 C -0.13 0.00 5.39 -19.85 -0.11 -0.11 16 13 C -0.08 0.20 2.82 71.23 0.20 0.40 16 14 O -0.55 0.32 12.77 -148.98 -1.90 -1.58 16 15 Si 0.99 -3.77 25.07 68.60 1.72 -2.05 16 16 H -0.25 1.12 7.11 99.48 0.71 1.83 16 17 H -0.28 -0.11 7.11 99.48 0.71 0.60 16 18 H -0.25 0.90 7.11 99.48 0.71 1.61 16 19 C -0.09 -0.34 9.58 22.30 0.21 -0.13 16 20 C 0.04 0.30 7.31 22.45 0.16 0.47 16 21 F -0.15 -1.88 17.11 44.97 0.77 -1.11 16 22 C -0.40 2.39 5.30 73.05 0.39 2.78 16 23 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 24 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 25 H 0.07 -0.36 7.96 -2.38 -0.02 -0.38 16 26 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 27 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 28 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 29 H 0.07 0.00 8.04 -2.39 -0.02 -0.02 16 30 H 0.08 -0.12 8.04 -2.39 -0.02 -0.14 16 31 H 0.04 0.25 8.12 -2.39 -0.02 0.23 16 32 H 0.06 0.00 8.04 -2.39 -0.02 -0.02 16 33 H 0.08 0.02 8.14 -2.39 -0.02 0.00 16 34 H 0.08 -0.28 7.58 -2.38 -0.02 -0.29 16 35 H 0.08 -0.30 7.68 -2.38 -0.02 -0.32 16 36 H 0.17 -0.93 6.30 -2.91 -0.02 -0.95 16 37 H 0.15 -0.91 4.87 -2.91 -0.01 -0.92 16 38 H 0.13 -0.48 7.96 -2.38 -0.02 -0.50 16 39 H 0.39 -2.77 8.70 -74.06 -0.64 -3.41 16 40 H 0.15 0.38 8.06 -2.91 -0.02 0.35 16 41 H 0.09 -0.74 8.03 -2.39 -0.02 -0.76 16 42 H 0.09 -0.67 8.06 -2.38 -0.02 -0.69 16 Total: 0.00 -12.83 344.46 5.94 -6.89 By element: Atomic # 1 Polarization: -6.45 SS G_CDS: 1.12 Total: -5.33 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: 4.23 Total: 12.12 kcal Atomic # 8 Polarization: -1.85 SS G_CDS: -2.81 Total: -4.66 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.77 Total: -1.11 kcal Atomic # 14 Polarization: -10.54 SS G_CDS: 2.64 Total: -7.91 kcal Total: -12.83 5.94 -6.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_7834706_18051908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.840 kcal (2) G-P(sol) polarization free energy of solvation -12.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds