Wall clock time and date at job start Sat Mar 6 2021 01:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35993 * 116.99713 * 2 1 4 4 C 1.38519 * 120.07117 * 0.20566 * 3 2 1 5 5 C 1.38362 * 119.98804 * 180.26006 * 4 3 2 6 6 Br 1.89103 * 119.93519 * 179.76853 * 5 4 3 7 7 C 1.38286 * 120.12900 * 359.78119 * 5 4 3 8 8 C 1.50702 * 119.93345 * 180.02562 * 7 5 4 9 9 O 1.42901 * 109.46842 * 284.65782 * 8 7 5 10 10 Si 1.86299 * 109.47235 * 164.65697 * 8 7 5 11 11 H 1.48501 * 109.47142 * 65.72468 * 10 8 7 12 12 H 1.48493 * 109.47081 * 185.72584 * 10 8 7 13 13 H 1.48494 * 109.47080 * 305.72864 * 10 8 7 14 14 C 1.38287 * 120.13520 * 359.97438 * 7 5 4 15 15 C 1.38511 * 120.00902 * 359.97438 * 14 7 5 16 16 O 1.36010 * 120.06389 * 179.97438 * 15 14 7 17 17 C 1.42896 * 116.99850 * 0.02562 * 16 15 14 18 18 C 1.53003 * 109.47015 * 179.97438 * 17 16 15 19 19 C 1.53575 * 109.12421 * 66.45642 * 18 17 16 20 20 C 1.55906 * 109.50867 * 169.52017 * 19 18 17 21 21 Si 1.89662 * 99.33649 * 319.37668 * 20 19 18 22 22 C 1.86301 * 111.45726 * 138.35769 * 21 20 19 23 23 C 1.86297 * 111.45745 * 263.30109 * 21 20 19 24 24 C 1.55350 * 109.09537 * 188.23376 * 18 17 16 25 25 H 1.08994 * 109.47619 * 300.00682 * 1 2 3 26 26 H 1.09004 * 109.46951 * 60.00328 * 1 2 3 27 27 H 1.09000 * 109.47540 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00692 * 359.97438 * 4 3 2 29 29 H 1.08991 * 109.46815 * 44.65459 * 8 7 5 30 30 H 0.96701 * 114.00009 * 299.99552 * 9 8 7 31 31 H 1.08000 * 119.99472 * 179.97438 * 14 7 5 32 32 H 1.09003 * 109.47375 * 59.99999 * 17 16 15 33 33 H 1.08998 * 109.47173 * 299.99607 * 17 16 15 34 34 H 1.09002 * 109.02029 * 307.35460 * 18 17 16 35 35 H 1.09004 * 109.47280 * 49.48995 * 19 18 17 36 36 H 1.09003 * 109.47044 * 289.54667 * 19 18 17 37 37 H 1.08999 * 111.42968 * 201.85109 * 20 19 18 38 38 H 1.09000 * 111.43005 * 76.90599 * 20 19 18 39 39 H 1.09004 * 109.46834 * 185.06792 * 22 21 20 40 40 H 1.08999 * 109.47178 * 65.06548 * 22 21 20 41 41 H 1.09007 * 109.46982 * 305.06483 * 22 21 20 42 42 H 1.08995 * 109.47476 * 294.93070 * 23 21 20 43 43 H 1.09000 * 109.46924 * 54.93803 * 23 21 20 44 44 H 1.09004 * 109.46888 * 174.93071 * 23 21 20 45 45 H 1.09004 * 111.07632 * 92.91333 * 24 18 17 46 46 H 1.09009 * 111.09714 * 328.90157 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2933 2.3743 0.0043 5 6 1.9231 3.6063 -0.0011 6 35 0.8936 5.1925 -0.0019 7 6 3.3040 3.6798 -0.0063 8 6 3.9855 5.0240 -0.0117 9 8 3.8920 5.6002 -1.3160 10 14 5.7787 4.8130 0.4470 11 1 6.4718 4.0340 -0.6104 12 1 6.4167 6.1475 0.5772 13 1 5.8771 4.0890 1.7398 14 6 4.0609 2.5225 -0.0055 15 6 3.4363 1.2863 0.0010 16 8 4.1796 0.1473 0.0012 17 6 5.6004 0.2999 -0.0049 18 6 6.2616 -1.0799 -0.0029 19 6 5.9511 -1.7884 -1.3296 20 6 6.8286 -3.0712 -1.4526 21 14 8.4615 -2.3940 -0.7655 22 6 9.2887 -3.6246 0.3624 23 6 9.6060 -1.8569 -2.1337 24 6 7.7922 -0.9098 0.2007 25 1 -0.3634 0.5139 0.8898 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 0.2147 2.3192 0.0072 29 1 3.5004 5.6801 0.7109 30 1 4.3038 5.0688 -2.0112 31 1 5.1393 2.5826 -0.0100 32 1 5.9104 0.8521 0.8824 33 1 5.9033 0.8470 -0.8976 34 1 5.8544 -1.6678 0.8197 35 1 6.1702 -1.1172 -2.1600 36 1 4.8971 -2.0653 -1.3557 37 1 6.9331 -3.3841 -2.4915 38 1 6.4408 -3.8799 -0.8331 39 1 10.1740 -3.1709 0.8082 40 1 9.5810 -4.5041 -0.2113 41 1 8.5952 -3.9187 1.1503 42 1 9.9003 -2.7251 -2.7232 43 1 9.0942 -1.1390 -2.7747 44 1 10.4933 -1.3920 -1.7037 45 1 8.0572 -0.9777 1.2559 46 1 8.1435 0.0281 -0.2297 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_8663_18051908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:14:19 Heat of formation + Delta-G solvation = -116.311808 kcal Electronic energy + Delta-G solvation = -26207.114900 eV Core-core repulsion = 22460.361565 eV Total energy + Delta-G solvation = -3746.753335 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 388.066 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.92154 -39.85132 -39.16931 -37.23665 -36.56931 -32.94470 -32.27780 -30.77875 -29.96892 -29.10294 -28.57296 -28.37154 -27.31385 -26.09246 -24.28542 -23.23241 -22.59148 -20.76046 -19.77615 -18.61101 -18.13823 -17.60805 -17.25457 -16.56607 -16.42701 -16.17113 -15.92327 -15.73997 -15.67220 -14.87680 -14.84211 -14.40808 -14.06158 -13.93797 -13.83512 -13.77524 -13.65383 -13.44733 -13.39586 -13.17142 -13.07007 -12.81716 -12.53615 -12.39673 -12.32454 -12.25200 -12.19774 -12.15356 -11.85943 -11.66814 -11.43133 -11.22391 -11.11673 -10.76309 -10.47845 -10.46091 -10.24506 -9.95779 -8.98472 -0.13086 -0.06463 0.56252 1.06499 1.35889 1.46348 1.68327 1.85262 2.00834 2.03872 2.07913 2.15182 2.24599 2.64661 3.32432 3.47632 3.61682 3.74654 3.85896 3.91215 4.00113 4.06104 4.19217 4.28192 4.32218 4.33335 4.42471 4.51094 4.54751 4.61004 4.64894 4.68432 4.72108 4.77955 4.82147 4.84625 4.85790 4.86607 4.97627 5.15258 5.16719 5.22711 5.33732 5.48477 5.52718 5.60627 5.65336 5.92831 6.38167 6.68196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.321 6.321 3 C 0.098 3.902 4 C -0.145 4.145 5 C -0.077 4.077 6 Br -0.034 7.034 7 C -0.089 4.089 8 C -0.084 4.084 9 O -0.537 6.537 10 Si 0.965 3.035 11 H -0.234 1.234 12 H -0.263 1.263 13 H -0.254 1.254 14 C -0.176 4.176 15 C 0.114 3.886 16 O -0.312 6.312 17 C 0.048 3.952 18 C -0.078 4.078 19 C -0.114 4.114 20 C -0.415 4.415 21 Si 1.041 2.959 22 C -0.457 4.457 23 C -0.454 4.454 24 C -0.404 4.404 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.118 0.882 28 H 0.161 0.839 29 H 0.120 0.880 30 H 0.388 0.612 31 H 0.155 0.845 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.090 0.910 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.716 -1.920 -0.156 3.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.235 6.235 3 C 0.051 3.949 4 C -0.165 4.165 5 C -0.157 4.157 6 Br 0.052 6.948 7 C -0.092 4.092 8 C -0.195 4.195 9 O -0.344 6.344 10 Si 0.787 3.213 11 H -0.157 1.157 12 H -0.188 1.188 13 H -0.178 1.178 14 C -0.195 4.195 15 C 0.067 3.933 16 O -0.226 6.226 17 C -0.027 4.027 18 C -0.097 4.097 19 C -0.151 4.151 20 C -0.499 4.499 21 Si 1.234 2.766 22 C -0.564 4.564 23 C -0.561 4.561 24 C -0.488 4.488 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.136 0.864 28 H 0.179 0.821 29 H 0.137 0.863 30 H 0.236 0.764 31 H 0.172 0.828 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.108 0.892 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.928 -1.378 0.385 3.258 hybrid contribution -0.624 -0.452 -0.307 0.829 sum 2.304 -1.829 0.078 2.943 Atomic orbital electron populations 1.23411 0.76279 1.05838 1.02435 1.86190 1.23349 1.25283 1.88677 1.18345 0.89383 0.85566 1.01641 1.21176 1.01333 0.89417 1.04602 1.21415 0.93795 0.92207 1.08266 1.96752 1.69457 1.31073 1.97517 1.20039 0.92163 0.96190 1.00777 1.25123 1.11834 0.92328 0.90169 1.86562 1.82457 1.49351 1.15980 0.85486 0.73791 0.80698 0.81337 1.15664 1.18790 1.17751 1.21043 1.00882 0.90151 1.07455 1.18419 0.88623 0.86530 0.99713 1.86220 1.20210 1.28013 1.88129 1.23445 0.76639 1.00189 1.02390 1.21528 0.95529 0.93514 0.99093 1.21915 1.00143 0.96611 0.96455 1.26889 1.16938 0.99685 1.06378 0.79418 0.65502 0.65834 0.65880 1.26190 1.07860 1.11784 1.10585 1.26150 1.10739 1.05966 1.13289 1.26826 0.97020 1.15426 1.09569 0.91435 0.91473 0.86370 0.82143 0.86262 0.76361 0.82765 0.91007 0.90578 0.90624 0.91354 0.93041 0.90375 0.90876 0.90901 0.91199 0.91294 0.91166 0.91075 0.90775 0.89165 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.03 9.81 113.37 1.11 1.08 16 2 O -0.32 -2.04 10.28 -79.61 -0.82 -2.86 16 3 C 0.10 0.60 6.70 22.57 0.15 0.75 16 4 C -0.14 -0.51 8.77 22.37 0.20 -0.32 16 5 C -0.08 -0.33 6.22 22.31 0.14 -0.19 16 6 Br -0.03 -0.14 31.96 -20.37 -0.65 -0.79 16 7 C -0.09 -0.24 5.26 -19.84 -0.10 -0.35 16 8 C -0.08 -0.05 2.02 71.24 0.14 0.09 16 9 O -0.54 -0.46 12.71 -148.98 -1.89 -2.36 16 10 Si 0.97 -1.40 25.31 68.60 1.74 0.33 16 11 H -0.23 0.93 6.96 99.48 0.69 1.63 16 12 H -0.26 -0.38 7.11 99.48 0.71 0.32 16 13 H -0.25 0.08 7.11 99.48 0.71 0.79 16 14 C -0.18 -0.41 7.64 22.35 0.17 -0.24 16 15 C 0.11 0.67 6.70 22.57 0.15 0.82 16 16 O -0.31 -1.98 9.69 -79.80 -0.77 -2.75 16 17 C 0.05 0.02 3.98 71.98 0.29 0.30 16 18 C -0.08 0.08 2.58 -9.79 -0.03 0.05 16 19 C -0.11 -0.02 5.06 31.79 0.16 0.14 16 20 C -0.41 0.91 5.95 72.99 0.43 1.34 16 21 Si 1.04 -6.87 13.35 68.60 0.92 -5.96 16 22 C -0.46 1.99 8.65 113.37 0.98 2.97 16 23 C -0.45 2.31 8.65 113.37 0.98 3.29 16 24 C -0.40 2.14 5.28 72.79 0.38 2.52 16 25 H 0.07 -0.27 7.65 -2.39 -0.02 -0.29 16 26 H 0.07 -0.26 7.67 -2.38 -0.02 -0.28 16 27 H 0.12 -0.60 8.14 -2.39 -0.02 -0.62 16 28 H 0.16 -0.04 6.30 -2.91 -0.02 -0.06 16 29 H 0.12 0.11 7.20 -2.39 -0.02 0.10 16 30 H 0.39 -2.26 8.70 -74.06 -0.64 -2.91 16 31 H 0.16 -0.24 3.28 -2.91 -0.01 -0.25 16 32 H 0.07 -0.12 7.65 -2.39 -0.02 -0.14 16 33 H 0.08 -0.19 7.60 -2.39 -0.02 -0.21 16 34 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 35 H 0.07 -0.08 8.05 -2.39 -0.02 -0.10 16 36 H 0.05 0.23 8.11 -2.39 -0.02 0.21 16 37 H 0.08 -0.18 8.06 -2.39 -0.02 -0.20 16 38 H 0.07 -0.09 8.06 -2.39 -0.02 -0.11 16 39 H 0.07 -0.34 7.96 -2.38 -0.02 -0.36 16 40 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 41 H 0.07 -0.25 7.96 -2.38 -0.02 -0.26 16 42 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 43 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 44 H 0.07 -0.40 7.96 -2.38 -0.02 -0.42 16 45 H 0.09 -0.56 8.04 -2.39 -0.02 -0.57 16 46 H 0.09 -0.64 7.85 -2.38 -0.02 -0.66 16 Total: 0.00 -12.22 386.02 4.75 -7.46 By element: Atomic # 1 Polarization: -6.42 SS G_CDS: 1.08 Total: -5.35 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 5.16 Total: 12.27 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -3.49 Total: -7.97 kcal Atomic # 14 Polarization: -8.27 SS G_CDS: 2.65 Total: -5.62 kcal Atomic # 35 Polarization: -0.14 SS G_CDS: -0.65 Total: -0.79 kcal Total: -12.22 4.75 -7.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_8663_18051908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.848 kcal (2) G-P(sol) polarization free energy of solvation -12.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds