Wall clock time and date at job start Sat Mar 6 2021 01:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 C 1.52995 * 109.47643 * 190.93802 * 6 5 4 8 8 O 1.42901 * 109.47074 * 293.54788 * 7 6 5 9 9 C 1.35900 * 117.00200 * 179.97438 * 8 7 6 10 10 C 1.38612 * 120.02821 * 359.72320 * 9 8 7 11 11 C 1.38651 * 119.89371 * 179.81955 * 10 9 8 12 12 O 1.35898 * 120.02920 * 180.18742 * 11 10 9 13 13 C 1.42905 * 117.00188 * 180.27387 * 12 11 10 14 14 C 1.50696 * 109.47159 * 179.97438 * 13 12 11 15 15 C 1.38233 * 120.00120 * 269.72690 * 14 13 12 16 16 C 1.38241 * 119.99896 * 179.77119 * 15 14 13 17 17 C 1.38236 * 119.99712 * 0.50050 * 16 15 14 18 18 C 1.38233 * 120.00401 * 359.75064 * 17 16 15 19 19 C 1.38236 * 119.99950 * 359.97438 * 18 17 16 20 20 C 1.38750 * 119.94380 * 0.45051 * 11 10 9 21 21 C 1.38196 * 120.05647 * 359.78220 * 20 11 10 22 22 C 1.38162 * 120.10846 * 359.97438 * 21 20 11 23 23 C 1.50697 * 119.97364 * 179.97438 * 22 21 20 24 24 O 1.42901 * 109.47131 * 105.02335 * 23 22 21 25 25 Si 1.86294 * 109.47059 * 345.02297 * 23 22 21 26 26 H 1.48496 * 109.47342 * 60.00125 * 25 23 22 27 27 H 1.48505 * 109.46911 * 179.97438 * 25 23 22 28 28 H 1.48494 * 109.47320 * 300.00004 * 25 23 22 29 29 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 30 30 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 31 31 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 32 32 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 34 34 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 36 36 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 37 37 H 1.08999 * 111.05229 * 356.11516 * 4 2 1 38 38 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 39 39 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 40 40 H 1.09004 * 109.47418 * 70.93608 * 6 5 4 41 41 H 1.09007 * 109.46916 * 53.54343 * 7 6 5 42 42 H 1.09005 * 109.47687 * 173.54545 * 7 6 5 43 43 H 1.08011 * 120.05207 * 0.02562 * 10 9 8 44 44 H 1.09006 * 109.46514 * 299.99654 * 13 12 11 45 45 H 1.08993 * 109.47320 * 59.99395 * 13 12 11 46 46 H 1.07994 * 119.99677 * 359.97438 * 15 14 13 47 47 H 1.07994 * 119.99669 * 180.23196 * 16 15 14 48 48 H 1.08000 * 119.99336 * 179.72598 * 17 16 15 49 49 H 1.07998 * 119.99919 * 179.97438 * 18 17 16 50 50 H 1.07997 * 120.00285 * 179.97438 * 19 18 17 51 51 H 1.07998 * 119.97305 * 179.75350 * 20 11 10 52 52 H 1.08002 * 119.94895 * 179.97438 * 21 20 11 53 53 H 1.08998 * 109.46789 * 225.02182 * 23 22 21 54 54 H 0.96698 * 113.99759 * 179.97438 * 24 23 22 55 55 H 1.08996 * 111.41269 * 283.05303 * 29 6 5 56 56 H 1.09006 * 111.49251 * 158.06559 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1417 -2.9771 -1.5067 8 8 5.3027 -3.5593 -0.9107 9 6 5.8104 -4.6706 -1.5059 10 6 5.2004 -5.1924 -2.6359 11 6 5.7230 -6.3240 -3.2431 12 8 5.1293 -6.8357 -4.3533 13 6 5.7182 -8.0067 -4.9227 14 6 4.9299 -8.4259 -6.1367 15 6 3.8743 -9.3086 -6.0045 16 6 3.1483 -9.6894 -7.1176 17 6 3.4843 -9.1954 -8.3642 18 6 4.5431 -8.3167 -8.4971 19 6 5.2656 -7.9315 -7.3833 20 6 6.8493 -6.9368 -2.7131 21 6 7.4530 -6.4176 -1.5836 22 6 6.9371 -5.2871 -0.9796 23 6 7.5974 -4.7237 0.2523 24 8 8.3267 -3.5449 -0.0950 25 14 8.7648 -5.9888 0.9647 26 1 9.8024 -6.3273 -0.0422 27 1 9.4159 -5.4334 2.1783 28 1 8.0070 -7.2138 1.3255 29 6 2.5568 -1.0142 -1.4447 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.1907 2.2612 0.8899 34 1 3.6274 1.7027 -0.0005 35 1 2.1908 2.2612 -0.8900 36 1 3.2797 -0.4330 2.0151 37 1 1.7543 -1.3786 2.0840 38 1 4.1055 -2.5196 1.2701 39 1 2.5407 -3.0054 0.5873 40 1 4.5675 -1.0680 -0.6042 41 1 3.3305 -3.7052 -1.5088 42 1 4.3683 -2.6826 -2.5315 43 1 4.3213 -4.7162 -3.0447 44 1 6.7466 -7.7917 -5.2131 45 1 5.7089 -8.8119 -4.1881 46 1 3.6149 -9.6982 -5.0313 47 1 2.3213 -10.3761 -7.0138 48 1 2.9198 -9.4964 -9.2343 49 1 4.8059 -7.9312 -9.4711 50 1 6.0931 -7.2454 -7.4871 51 1 7.2544 -7.8206 -3.1833 52 1 8.3294 -6.8962 -1.1722 53 1 6.8358 -4.4753 0.9913 54 1 8.7782 -3.1277 0.6514 55 1 1.8198 -1.7216 -1.8246 56 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_8697348_18051908.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:26:37 Heat of formation + Delta-G solvation = -94.639781 kcal Electronic energy + Delta-G solvation = -32951.398554 eV Core-core repulsion = 28721.423191 eV Total energy + Delta-G solvation = -4229.975363 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 386.187 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.75963 -40.61321 -39.71145 -38.50417 -37.17916 -36.46351 -33.45730 -31.91280 -31.88234 -31.34371 -30.42029 -29.11119 -28.37685 -27.75734 -27.21263 -26.07833 -24.32348 -23.58008 -23.42983 -22.56796 -21.93145 -20.70569 -19.88209 -18.44681 -18.22612 -17.58559 -17.44324 -17.15178 -16.87164 -16.84806 -16.25445 -16.00530 -15.77557 -15.51742 -15.37785 -15.21201 -14.89153 -14.50117 -14.35842 -14.28528 -13.98203 -13.87738 -13.81415 -13.78555 -13.64442 -13.55556 -13.49282 -13.38733 -13.19317 -13.13811 -12.68836 -12.63150 -12.37759 -12.25713 -12.17827 -12.07880 -12.03108 -11.92906 -11.72687 -11.62829 -11.52128 -11.34531 -10.76430 -10.45805 -10.27100 -10.21812 -9.91124 -9.88743 -9.71137 -9.10080 0.15727 0.18185 0.29762 0.41432 1.17549 1.46154 1.51505 1.69064 1.89512 2.00803 2.01502 2.05852 2.25645 2.52286 2.64867 2.90814 3.51306 3.63283 3.69676 3.77549 3.77989 3.93305 3.96799 4.01211 4.06004 4.07763 4.14865 4.19856 4.22503 4.25758 4.30791 4.39091 4.44210 4.53934 4.54882 4.58831 4.64338 4.66189 4.70435 4.76319 4.81795 4.84573 4.85444 4.86209 4.96899 4.99640 5.06668 5.11871 5.19244 5.22462 5.26424 5.35107 5.43918 5.46497 5.51102 5.52899 5.54031 5.54286 5.60673 5.64768 5.99864 6.20293 6.37244 6.86989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.042 2.958 3 C -0.456 4.456 4 C -0.412 4.412 5 C -0.109 4.109 6 C -0.081 4.081 7 C 0.059 3.941 8 O -0.308 6.308 9 C 0.184 3.816 10 C -0.257 4.257 11 C 0.167 3.833 12 O -0.320 6.320 13 C 0.098 3.902 14 C -0.113 4.113 15 C -0.108 4.108 16 C -0.133 4.133 17 C -0.117 4.117 18 C -0.133 4.133 19 C -0.109 4.109 20 C -0.243 4.243 21 C -0.051 4.051 22 C -0.166 4.166 23 C -0.071 4.071 24 O -0.562 6.562 25 Si 0.981 3.019 26 H -0.258 1.258 27 H -0.254 1.254 28 H -0.256 1.256 29 C -0.404 4.404 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.140 0.860 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.134 0.866 47 H 0.142 0.858 48 H 0.142 0.858 49 H 0.141 0.859 50 H 0.132 0.868 51 H 0.155 0.845 52 H 0.146 0.854 53 H 0.075 0.925 54 H 0.392 0.608 55 H 0.085 0.915 56 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.396 -0.696 0.061 1.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.235 2.765 3 C -0.564 4.564 4 C -0.497 4.497 5 C -0.147 4.147 6 C -0.099 4.099 7 C -0.016 4.016 8 O -0.221 6.221 9 C 0.137 3.863 10 C -0.276 4.276 11 C 0.121 3.879 12 O -0.234 6.234 13 C 0.024 3.976 14 C -0.113 4.113 15 C -0.126 4.126 16 C -0.150 4.150 17 C -0.135 4.135 18 C -0.151 4.151 19 C -0.127 4.127 20 C -0.261 4.261 21 C -0.069 4.069 22 C -0.167 4.167 23 C -0.180 4.180 24 O -0.370 6.370 25 Si 0.803 3.197 26 H -0.182 1.182 27 H -0.178 1.178 28 H -0.180 1.180 29 C -0.488 4.488 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.158 0.842 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.152 0.848 47 H 0.160 0.840 48 H 0.160 0.840 49 H 0.159 0.841 50 H 0.150 0.850 51 H 0.173 0.827 52 H 0.164 0.836 53 H 0.093 0.907 54 H 0.242 0.758 55 H 0.104 0.896 56 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.194 -1.251 -0.115 1.733 hybrid contribution 0.025 0.183 0.042 0.189 sum -1.169 -1.068 -0.073 1.585 Atomic orbital electron populations 1.26155 1.20793 1.04600 1.04638 0.79406 0.65880 0.65706 0.65554 1.26181 1.06636 1.18889 1.04661 1.26688 1.05593 1.06393 1.11013 1.21699 1.00124 0.98624 0.94221 1.21701 0.99027 0.94573 0.94608 1.23209 0.85437 0.95537 0.97388 1.86142 1.44511 1.38644 1.52783 1.18539 0.91756 0.85893 0.90074 1.20531 1.06112 1.00762 1.00224 1.18765 0.91278 0.91984 0.85874 1.86131 1.53969 1.43829 1.39508 1.21802 0.96556 0.86073 0.93155 1.19634 0.98411 0.99428 0.93839 1.21329 0.94301 0.97101 0.99826 1.21484 1.00347 1.00591 0.92621 1.21590 0.97035 0.96538 0.98368 1.21477 0.96005 0.98197 0.99400 1.21329 1.00190 0.98876 0.92270 1.21302 0.99041 1.05002 1.00785 1.20923 0.98128 0.93836 0.93980 1.18830 0.97450 0.98897 1.01483 1.24648 1.00602 0.95354 0.97412 1.86490 1.69105 1.41785 1.39601 0.85313 0.78207 0.77457 0.78684 1.18208 1.17814 1.17976 1.27008 1.02275 1.08149 1.11362 0.90957 0.91043 0.91130 0.90980 0.91340 0.90966 0.90678 0.90189 0.92743 0.92099 0.90196 0.91389 0.91822 0.84201 0.89639 0.89416 0.84836 0.84050 0.84012 0.84124 0.85002 0.82745 0.83635 0.90684 0.75830 0.89586 0.89590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.68 8.65 113.37 0.98 2.66 16 2 Si 1.04 -5.49 13.35 68.60 0.92 -4.57 16 3 C -0.46 1.46 8.65 113.37 0.98 2.44 16 4 C -0.41 0.74 5.85 72.72 0.43 1.17 16 5 C -0.11 -0.11 5.21 31.52 0.16 0.05 16 6 C -0.08 -0.07 2.40 -9.54 -0.02 -0.09 16 7 C 0.06 0.22 4.11 71.98 0.30 0.51 16 8 O -0.31 -2.55 9.24 -92.42 -0.85 -3.40 16 9 C 0.18 1.68 6.66 22.49 0.15 1.83 16 10 C -0.26 -2.13 8.97 22.46 0.20 -1.93 16 11 C 0.17 1.21 6.68 22.49 0.15 1.36 16 12 O -0.32 -2.20 10.12 -92.40 -0.93 -3.14 16 13 C 0.10 0.14 4.87 71.23 0.35 0.48 16 14 C -0.11 -0.35 5.51 -19.87 -0.11 -0.46 16 15 C -0.11 -0.24 9.70 22.27 0.22 -0.02 16 16 C -0.13 -0.13 10.05 22.27 0.22 0.09 16 17 C -0.12 -0.08 10.05 22.27 0.22 0.15 16 18 C -0.13 -0.16 10.05 22.27 0.22 0.06 16 19 C -0.11 -0.28 9.70 22.27 0.22 -0.06 16 20 C -0.24 -1.05 9.04 22.38 0.20 -0.85 16 21 C -0.05 -0.27 8.65 22.24 0.19 -0.07 16 22 C -0.17 -1.28 5.31 -19.75 -0.10 -1.39 16 23 C -0.07 -0.29 2.37 71.23 0.17 -0.12 16 24 O -0.56 -2.83 12.86 -148.98 -1.92 -4.74 16 25 Si 0.98 0.73 25.49 68.60 1.75 2.48 16 26 H -0.26 -0.53 6.73 99.48 0.67 0.14 16 27 H -0.25 -0.06 7.11 99.48 0.71 0.65 16 28 H -0.26 -0.44 7.11 99.48 0.71 0.27 16 29 C -0.40 1.14 5.30 73.05 0.39 1.53 16 30 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 31 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 32 H 0.07 -0.23 7.96 -2.38 -0.02 -0.25 16 33 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 34 H 0.07 -0.16 7.96 -2.39 -0.02 -0.17 16 35 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 36 H 0.07 -0.11 8.04 -2.39 -0.02 -0.13 16 37 H 0.08 -0.17 8.04 -2.39 -0.02 -0.19 16 38 H 0.05 0.20 8.12 -2.39 -0.02 0.18 16 39 H 0.06 0.05 8.04 -2.39 -0.02 0.04 16 40 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 41 H 0.07 0.16 7.58 -2.38 -0.02 0.14 16 42 H 0.06 0.22 7.67 -2.38 -0.02 0.20 16 43 H 0.14 0.92 6.30 -2.90 -0.02 0.90 16 44 H 0.09 -0.11 7.60 -2.38 -0.02 -0.13 16 45 H 0.09 -0.15 7.60 -2.39 -0.02 -0.17 16 46 H 0.13 -0.09 8.06 -2.91 -0.02 -0.11 16 47 H 0.14 -0.42 8.06 -2.91 -0.02 -0.45 16 48 H 0.14 -0.50 8.06 -2.91 -0.02 -0.52 16 49 H 0.14 -0.37 8.06 -2.91 -0.02 -0.40 16 50 H 0.13 0.00 8.06 -2.91 -0.02 -0.02 16 51 H 0.15 -0.17 6.29 -2.91 -0.02 -0.19 16 52 H 0.15 0.20 4.88 -2.91 -0.01 0.19 16 53 H 0.08 0.22 7.82 -2.39 -0.02 0.20 16 54 H 0.39 -1.63 8.74 -74.06 -0.65 -2.28 16 55 H 0.09 -0.29 8.03 -2.39 -0.02 -0.31 16 56 H 0.09 -0.29 8.06 -2.38 -0.02 -0.31 16 Total: 0.00 -15.12 448.79 5.40 -9.72 By element: Atomic # 1 Polarization: -4.61 SS G_CDS: 0.93 Total: -3.69 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 5.51 Total: 7.34 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -3.70 Total: -11.28 kcal Atomic # 14 Polarization: -4.76 SS G_CDS: 2.66 Total: -2.09 kcal Total: -15.12 5.40 -9.72 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_8697348_18051908.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.917 kcal (2) G-P(sol) polarization free energy of solvation -15.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds