Wall clock time and date at job start Sat Mar 6 2021 02:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42903 * 109.47388 * 2 1 4 4 C 1.35901 * 116.99656 * 275.32684 * 3 2 1 5 5 C 1.38726 * 120.06101 * 5.08499 * 4 3 2 6 6 C 1.38145 * 119.94667 * 179.74527 * 5 4 3 7 7 C 1.38275 * 120.05084 * 0.50525 * 6 5 4 8 8 C 1.50694 * 119.93961 * 179.74657 * 7 6 5 9 9 O 1.42898 * 109.47074 * 245.02072 * 8 7 6 10 10 Si 1.86295 * 109.47640 * 5.02105 * 8 7 6 11 11 C 1.38261 * 120.11009 * 359.76699 * 7 6 5 12 12 C 1.38149 * 120.06025 * 359.97438 * 11 7 6 13 13 C 1.50704 * 109.47260 * 120.00555 * 2 1 3 14 14 O 1.20821 * 119.99560 * 244.99774 * 13 2 1 15 15 O 1.34224 * 120.00145 * 64.99324 * 13 2 1 16 16 C 1.45202 * 117.00034 * 179.97438 * 15 13 2 17 17 C 1.53001 * 109.47205 * 180.02562 * 16 15 13 18 18 H 1.09008 * 112.84530 * 316.19612 * 17 16 15 19 19 C 1.53773 * 113.61541 * 87.50238 * 17 16 15 20 20 C 1.53784 * 87.08175 * 139.98055 * 19 17 16 21 21 H 1.08991 * 113.61192 * 89.11819 * 20 19 17 22 22 O 1.42894 * 113.61490 * 220.02425 * 20 19 17 23 23 C 1.53772 * 113.61203 * 185.00383 * 17 16 15 24 24 H 1.08991 * 109.46934 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46476 * 299.99814 * 1 2 3 26 26 H 1.08993 * 109.46912 * 59.99668 * 1 2 3 27 27 H 1.09001 * 109.46880 * 239.99895 * 2 1 3 28 28 H 1.08002 * 120.02779 * 359.97438 * 5 4 3 29 29 H 1.07999 * 119.97638 * 180.23082 * 6 5 4 30 30 H 1.09003 * 109.46851 * 125.02543 * 8 7 6 31 31 H 0.96702 * 114.00506 * 180.02562 * 9 8 7 32 32 H 1.48493 * 110.00377 * 178.67809 * 10 8 7 33 33 H 1.48499 * 110.00034 * 300.00058 * 10 8 7 34 34 H 1.08005 * 119.96761 * 179.97438 * 11 7 6 35 35 H 1.08001 * 120.02654 * 179.97438 * 12 11 7 36 36 H 1.09010 * 109.46684 * 60.00149 * 16 15 13 37 37 H 1.09000 * 109.47088 * 300.00322 * 16 15 13 38 38 H 1.08996 * 113.61901 * 254.53147 * 19 17 16 39 39 H 1.09007 * 113.61126 * 25.43723 * 19 17 16 40 40 H 0.96701 * 113.99612 * 277.49481 * 22 20 19 41 41 H 1.09000 * 113.62197 * 334.56515 * 23 17 16 42 42 H 1.09004 * 113.61623 * 105.47186 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3473 0.0000 4 6 2.1062 1.9664 -1.2057 5 6 1.6545 1.3304 -2.3529 6 6 1.7521 1.9640 -3.5765 7 6 2.3091 3.2269 -3.6599 8 6 2.4196 3.9134 -4.9968 9 8 3.7982 4.0834 -5.3325 10 14 1.5869 2.8741 -6.2995 11 6 2.7652 3.8605 -2.5188 12 6 2.6649 3.2333 -1.2920 13 6 2.0325 -0.7105 1.2304 14 8 2.6508 -0.1004 2.0701 15 8 1.7929 -2.0211 1.3934 16 6 2.3071 -2.6399 2.6022 17 6 1.9391 -4.1250 2.6112 18 1 0.9092 -4.3076 2.3041 19 6 2.9652 -5.0183 1.8946 20 6 2.7523 -6.0366 3.0271 21 1 1.9454 -6.7431 2.8329 22 8 3.9568 -6.6728 3.4588 23 6 2.3325 -4.8491 3.9094 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.2234 0.3422 -2.2889 29 1 1.3972 1.4709 -4.4694 30 1 1.9353 4.8886 -4.9455 31 1 3.9451 4.5202 -6.1826 32 1 1.6611 3.5554 -7.6168 33 1 2.2380 1.5419 -6.3792 34 1 3.2002 4.8467 -2.5866 35 1 3.0217 3.7285 -0.4010 36 1 1.8711 -2.1518 3.4739 37 1 3.3916 -2.5345 2.6313 38 1 2.6302 -5.3728 0.9198 39 1 3.9699 -4.5961 1.8702 40 1 4.2260 -7.4204 2.9077 41 1 3.1641 -4.3809 4.4359 42 1 1.4865 -5.0673 4.5613 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_10157686_11354868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 02:20:23 Heat of formation + Delta-G solvation = -140.920322 kcal Electronic energy + Delta-G solvation = -24894.276721 eV Core-core repulsion = 21000.890480 eV Total energy + Delta-G solvation = -3893.386241 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.139 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.13987 -41.21421 -40.27119 -39.24039 -37.74023 -37.33608 -36.02409 -33.63641 -31.97093 -31.73591 -29.69575 -26.80285 -26.75146 -25.72363 -24.33252 -23.45410 -22.54980 -21.67219 -20.58223 -19.69829 -18.77731 -18.59016 -18.50807 -18.05081 -17.74030 -16.82923 -16.74770 -16.53067 -16.32027 -15.71824 -15.68080 -15.33553 -15.07762 -14.67912 -14.64404 -14.21797 -14.00477 -13.77143 -13.70817 -13.63091 -13.50133 -13.30563 -12.98673 -12.80330 -12.45769 -12.38603 -12.29247 -12.22668 -11.93059 -11.78149 -11.69816 -11.48822 -11.24179 -10.75580 -10.46765 -10.06397 -9.28410 -4.91149 0.21474 0.27583 0.87962 0.93030 1.32476 1.62038 1.96444 2.27212 2.57931 3.12325 3.34756 3.42412 3.42717 3.53593 3.58436 3.70076 3.75641 3.81731 3.82759 3.92963 3.95699 4.13106 4.16602 4.25096 4.31354 4.34566 4.42352 4.59875 4.60735 4.65487 4.70402 4.72961 4.77625 4.93977 4.95618 5.06527 5.09834 5.14165 5.16252 5.21360 5.37289 5.48003 5.64027 6.19341 6.48002 6.60454 6.87278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.091 3.909 3 O -0.313 6.313 4 C 0.120 3.880 5 C -0.201 4.201 6 C -0.077 4.077 7 C -0.120 4.120 8 C -0.085 4.085 9 O -0.561 6.561 10 Si 0.768 3.232 11 C -0.060 4.060 12 C -0.162 4.162 13 C 0.466 3.534 14 O -0.527 6.527 15 O -0.340 6.340 16 C 0.075 3.925 17 C -0.100 4.100 18 H 0.125 0.875 19 C -0.164 4.164 20 C 0.075 3.925 21 H 0.106 0.894 22 O -0.584 6.584 23 C -0.126 4.126 24 H 0.109 0.891 25 H 0.064 0.936 26 H 0.099 0.901 27 H 0.137 0.863 28 H 0.163 0.837 29 H 0.150 0.850 30 H 0.094 0.906 31 H 0.394 0.606 32 H -0.290 1.290 33 H -0.295 1.295 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.396 0.604 41 H 0.079 0.921 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.675 -3.423 -4.468 8.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.034 3.966 3 O -0.228 6.228 4 C 0.075 3.925 5 C -0.219 4.219 6 C -0.095 4.095 7 C -0.120 4.120 8 C -0.193 4.193 9 O -0.371 6.371 10 Si 0.673 3.327 11 C -0.078 4.078 12 C -0.180 4.180 13 C 0.309 3.691 14 O -0.416 6.416 15 O -0.257 6.257 16 C 0.002 3.998 17 C -0.118 4.118 18 H 0.143 0.857 19 C -0.202 4.202 20 C 0.017 3.983 21 H 0.124 0.876 22 O -0.393 6.393 23 C -0.164 4.164 24 H 0.128 0.872 25 H 0.083 0.917 26 H 0.118 0.882 27 H 0.154 0.846 28 H 0.180 0.820 29 H 0.167 0.833 30 H 0.112 0.888 31 H 0.244 0.756 32 H -0.217 1.217 33 H -0.222 1.222 34 H 0.156 0.844 35 H 0.149 0.851 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.246 0.754 41 H 0.098 0.902 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.302 -3.470 -3.697 8.089 hybrid contribution 1.571 0.449 -0.465 1.699 sum -4.732 -3.021 -4.162 6.988 Atomic orbital electron populations 1.22378 0.89021 1.06171 1.05158 1.21942 0.97860 0.81734 0.95031 1.86132 1.81810 1.26324 1.28506 1.19155 0.96406 0.92972 0.83936 1.21474 1.06347 1.02642 0.91460 1.21046 0.97110 0.93344 0.97982 1.19451 1.02572 0.95729 0.94290 1.25017 0.87103 1.06440 1.00763 1.86554 1.24004 1.83034 1.43470 0.94175 0.88183 0.75655 0.74666 1.20960 0.96114 1.00138 0.90565 1.20638 1.03944 0.94186 0.99262 1.23583 0.76408 0.81325 0.87827 1.90719 1.38436 1.67676 1.44720 1.86438 1.72062 1.22569 1.44583 1.23273 0.98890 0.93270 0.84365 1.22365 1.01812 0.89560 0.98101 0.85678 1.23769 0.99227 0.97574 0.99610 1.23415 0.87594 0.92775 0.94549 0.87621 1.86489 1.43015 1.51390 1.58363 1.23118 1.01961 0.95078 0.96229 0.87204 0.91667 0.88234 0.84588 0.81969 0.83280 0.88845 0.75564 1.21700 1.22224 0.84394 0.85057 0.90719 0.91786 0.89468 0.90538 0.75409 0.90216 0.88846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.87 9.15 71.98 0.66 1.52 16 2 C 0.09 0.05 2.75 29.85 0.08 0.13 16 3 O -0.31 -2.17 9.34 -73.41 -0.69 -2.85 16 4 C 0.12 0.55 6.60 22.50 0.15 0.70 16 5 C -0.20 0.09 8.23 22.36 0.18 0.28 16 6 C -0.08 0.02 8.66 22.26 0.19 0.22 16 7 C -0.12 -0.26 5.38 -19.85 -0.11 -0.36 16 8 C -0.08 0.08 2.79 71.23 0.20 0.28 16 9 O -0.56 -1.31 12.81 -148.98 -1.91 -3.22 16 10 Si 0.77 -2.46 29.85 68.60 2.05 -0.41 16 11 C -0.06 -0.22 9.68 22.25 0.22 -0.01 16 12 C -0.16 -0.89 9.99 22.37 0.22 -0.66 16 13 C 0.47 2.81 7.29 71.24 0.52 3.33 16 14 O -0.53 -7.75 16.25 28.40 0.46 -7.29 16 15 O -0.34 -0.70 10.21 -51.36 -0.52 -1.23 16 16 C 0.08 0.11 5.30 71.98 0.38 0.49 16 17 C -0.10 0.32 4.02 -10.27 -0.04 0.28 16 18 H 0.13 -0.79 8.14 -2.38 -0.02 -0.81 16 19 C -0.16 0.46 7.46 31.12 0.23 0.70 16 20 C 0.08 -0.21 5.21 31.12 0.16 -0.05 16 21 H 0.11 -0.72 8.14 -2.39 -0.02 -0.74 16 22 O -0.58 -0.53 13.67 -148.98 -2.04 -2.57 16 23 C -0.13 0.26 7.47 31.12 0.23 0.49 16 24 H 0.11 -0.99 8.14 -2.39 -0.02 -1.01 16 25 H 0.06 -0.14 8.14 -2.38 -0.02 -0.16 16 26 H 0.10 -0.78 6.91 -2.39 -0.02 -0.79 16 27 H 0.14 -0.66 6.31 -2.39 -0.02 -0.67 16 28 H 0.16 -1.11 5.43 -2.91 -0.02 -1.13 16 29 H 0.15 -0.71 4.86 -2.91 -0.01 -0.72 16 30 H 0.09 -0.44 7.96 -2.39 -0.02 -0.46 16 31 H 0.39 -2.24 8.74 -74.06 -0.65 -2.88 16 32 H -0.29 -0.40 7.11 99.48 0.71 0.30 16 33 H -0.29 -0.98 7.05 99.48 0.70 -0.28 16 34 H 0.14 0.23 8.06 -2.91 -0.02 0.21 16 35 H 0.13 0.68 8.06 -2.91 -0.02 0.65 16 36 H 0.07 0.14 8.13 -2.38 -0.02 0.12 16 37 H 0.06 0.24 7.83 -2.39 -0.02 0.23 16 38 H 0.09 -0.45 8.14 -2.39 -0.02 -0.46 16 39 H 0.08 0.03 7.90 -2.38 -0.02 0.01 16 40 H 0.40 -2.90 9.12 -74.06 -0.68 -3.58 16 41 H 0.08 0.09 8.10 -2.39 -0.02 0.07 16 42 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 Total: 0.00 -23.19 352.54 0.40 -22.79 By element: Atomic # 1 Polarization: -12.32 SS G_CDS: -0.24 Total: -12.55 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 3.28 Total: 7.33 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: -4.69 Total: -17.16 kcal Atomic # 14 Polarization: -2.46 SS G_CDS: 2.05 Total: -0.41 kcal Total: -23.19 0.40 -22.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_10157686_11354868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.132 kcal (2) G-P(sol) polarization free energy of solvation -23.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds