Wall clock time and date at job start Sat Mar 6 2021 02:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.47030 * 2 1 4 4 C 1.35902 * 117.00058 * 84.95625 * 3 2 1 5 5 C 1.38726 * 120.05474 * 174.27336 * 4 3 2 6 6 C 1.38151 * 119.94021 * 179.74068 * 5 4 3 7 7 C 1.38260 * 120.05647 * 0.50288 * 6 5 4 8 8 C 1.50704 * 119.94422 * 179.74574 * 7 6 5 9 9 O 1.42901 * 109.47321 * 245.02377 * 8 7 6 10 10 Si 1.86299 * 109.46998 * 5.02689 * 8 7 6 11 11 C 1.38267 * 120.11377 * 359.77275 * 7 6 5 12 12 C 1.38145 * 120.05383 * 359.97146 * 11 7 6 13 13 C 1.50696 * 109.46973 * 239.99727 * 2 1 3 14 14 O 1.20826 * 119.99933 * 120.00240 * 13 2 1 15 15 O 1.34234 * 120.00142 * 300.00685 * 13 2 1 16 16 C 1.45202 * 116.99769 * 179.97438 * 15 13 2 17 17 C 1.52997 * 109.46816 * 179.97438 * 16 15 13 18 18 H 1.09001 * 109.47710 * 54.99804 * 17 16 15 19 19 C 1.53005 * 109.47390 * 174.99815 * 17 16 15 20 20 C 1.52996 * 109.47537 * 179.97438 * 19 17 16 21 21 C 1.53000 * 109.47452 * 300.00598 * 20 19 17 22 22 H 1.09000 * 109.46454 * 299.99512 * 21 20 19 23 23 O 1.42889 * 109.47261 * 180.02562 * 21 20 19 24 24 C 1.52997 * 109.47328 * 59.99442 * 21 20 19 25 25 C 1.53005 * 109.47098 * 294.99873 * 17 16 15 26 26 H 1.08997 * 109.47510 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47057 * 300.00416 * 1 2 3 28 28 H 1.09002 * 109.46695 * 59.99450 * 1 2 3 29 29 H 1.09003 * 109.46729 * 119.99997 * 2 1 3 30 30 H 1.07998 * 120.02902 * 359.97438 * 5 4 3 31 31 H 1.08001 * 119.96919 * 180.23246 * 6 5 4 32 32 H 1.09005 * 109.46861 * 125.02178 * 8 7 6 33 33 H 0.96704 * 113.99385 * 59.99771 * 9 8 7 34 34 H 1.48502 * 110.00121 * 180.02562 * 10 8 7 35 35 H 1.48500 * 110.00049 * 301.31683 * 10 8 7 36 36 H 1.08000 * 119.97400 * 179.97438 * 11 7 6 37 37 H 1.07996 * 120.03101 * 179.97438 * 12 11 7 38 38 H 1.08996 * 109.47255 * 59.99820 * 16 15 13 39 39 H 1.09001 * 109.47131 * 299.99320 * 16 15 13 40 40 H 1.09001 * 109.46703 * 59.99373 * 19 17 16 41 41 H 1.09003 * 109.46912 * 300.00276 * 19 17 16 42 42 H 1.08997 * 109.47244 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.46892 * 59.99841 * 20 19 17 44 44 H 0.96705 * 114.00116 * 179.97438 * 23 21 20 45 45 H 1.08999 * 109.47035 * 60.00112 * 24 21 20 46 46 H 1.08995 * 109.47306 * 180.02562 * 24 21 20 47 47 H 1.09000 * 109.46778 * 299.99942 * 25 17 16 48 48 H 1.09000 * 109.46961 * 60.00338 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.1116 1.9645 1.2062 5 6 2.6778 3.2280 1.2931 6 6 2.7788 3.8554 2.5197 7 6 2.3256 3.2209 3.6615 8 6 2.4423 3.9054 4.9991 9 8 3.3413 3.1716 5.8329 10 14 3.0911 5.6349 4.7571 11 6 1.7662 1.9592 3.5783 12 6 1.6581 1.3297 2.3534 13 6 2.0323 -0.7105 -1.2304 14 8 2.7270 -0.1233 -2.0258 15 8 1.7079 -1.9956 -1.4429 16 6 2.2266 -2.6156 -2.6490 17 6 1.7555 -4.0696 -2.7180 18 1 0.6685 -4.1033 -2.6450 19 6 2.1966 -4.6862 -4.0471 20 6 1.7261 -6.1404 -4.1158 21 6 2.3401 -6.9304 -2.9583 22 1 3.4271 -6.8964 -3.0316 23 8 1.9011 -8.2887 -3.0229 24 6 1.8990 -6.3139 -1.6294 25 6 2.3692 -4.8600 -1.5605 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.0358 3.7222 0.4021 31 1 3.2160 4.8406 2.5874 32 1 1.4611 3.9483 5.4720 33 1 4.2357 3.0931 5.4735 34 1 3.2113 6.3204 6.0689 35 1 4.4142 5.5915 4.0842 36 1 1.4134 1.4655 4.4717 37 1 1.2215 0.3440 2.2890 38 1 3.3161 -2.5874 -2.6324 39 1 1.8624 -2.0735 -3.5217 40 1 3.2837 -4.6525 -4.1201 41 1 1.7595 -4.1231 -4.8716 42 1 2.0400 -6.5794 -5.0628 43 1 0.6391 -6.1743 -4.0425 44 1 2.2526 -8.8496 -2.3179 45 1 0.8120 -6.3478 -1.5562 46 1 2.3367 -6.8765 -0.8048 47 1 3.4562 -4.8264 -1.6336 48 1 2.0548 -4.4208 -0.6137 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_10157686_16737258.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 02:05:21 Heat of formation + Delta-G solvation = -183.300366 kcal Electronic energy + Delta-G solvation = -28903.860224 eV Core-core repulsion = 24697.561009 eV Total energy + Delta-G solvation = -4206.299215 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.170 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.13020 -41.20447 -40.10018 -39.32968 -37.88430 -37.28698 -36.60826 -33.63321 -32.11765 -31.91731 -31.83808 -31.40462 -27.22833 -26.62364 -25.43103 -24.24210 -23.80936 -22.79691 -22.24442 -21.66886 -20.87287 -19.66452 -18.77844 -18.29342 -18.24330 -18.09895 -17.71605 -16.68549 -16.61462 -16.44872 -16.25043 -16.16418 -15.54402 -15.49217 -15.24496 -15.13042 -14.79246 -14.54472 -14.42954 -14.26991 -13.97972 -13.85886 -13.56322 -13.36291 -13.31327 -13.23294 -13.15791 -12.94686 -12.59119 -12.25773 -12.21074 -12.15924 -12.13600 -11.94620 -11.72477 -11.63563 -11.58819 -11.42805 -11.11115 -10.71762 -10.58862 -10.06002 -9.29153 -4.91425 0.20732 0.30397 0.87741 0.96779 1.33036 1.59736 1.96139 2.28575 2.61745 3.16122 3.29564 3.45130 3.55365 3.59916 3.67746 3.71222 3.71350 3.74618 3.82820 3.89874 4.02144 4.13296 4.22927 4.24812 4.31262 4.33276 4.34627 4.45801 4.47032 4.52231 4.54873 4.58609 4.62399 4.69929 4.79486 4.93575 4.97967 5.02692 5.05876 5.07830 5.13921 5.15718 5.16134 5.20411 5.26046 5.30480 5.43115 5.46726 5.63430 6.20303 6.49566 6.49652 6.85522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.093 3.907 3 O -0.312 6.312 4 C 0.119 3.881 5 C -0.155 4.155 6 C -0.078 4.078 7 C -0.155 4.155 8 C -0.074 4.074 9 O -0.548 6.548 10 Si 0.759 3.241 11 C -0.055 4.055 12 C -0.207 4.207 13 C 0.467 3.533 14 O -0.525 6.525 15 O -0.341 6.341 16 C 0.069 3.931 17 C -0.081 4.081 18 H 0.088 0.912 19 C -0.107 4.107 20 C -0.112 4.112 21 C 0.099 3.901 22 H 0.060 0.940 23 O -0.590 6.590 24 C -0.145 4.145 25 C -0.111 4.111 26 H 0.107 0.893 27 H 0.093 0.907 28 H 0.065 0.935 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.147 0.853 32 H 0.128 0.872 33 H 0.385 0.615 34 H -0.304 1.304 35 H -0.285 1.285 36 H 0.141 0.859 37 H 0.154 0.846 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.393 0.607 45 H 0.066 0.934 46 H 0.076 0.924 47 H 0.067 0.933 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.485 -1.658 1.533 3.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.036 3.964 3 O -0.226 6.226 4 C 0.075 3.925 5 C -0.174 4.174 6 C -0.096 4.096 7 C -0.155 4.155 8 C -0.183 4.183 9 O -0.357 6.357 10 Si 0.665 3.335 11 C -0.073 4.073 12 C -0.225 4.225 13 C 0.310 3.690 14 O -0.413 6.413 15 O -0.258 6.258 16 C -0.004 4.004 17 C -0.099 4.099 18 H 0.106 0.894 19 C -0.144 4.144 20 C -0.150 4.150 21 C 0.041 3.959 22 H 0.077 0.923 23 O -0.399 6.399 24 C -0.183 4.183 25 C -0.148 4.148 26 H 0.125 0.875 27 H 0.112 0.888 28 H 0.084 0.916 29 H 0.153 0.847 30 H 0.155 0.845 31 H 0.165 0.835 32 H 0.145 0.855 33 H 0.235 0.765 34 H -0.233 1.233 35 H -0.212 1.212 36 H 0.159 0.841 37 H 0.171 0.829 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.243 0.757 45 H 0.085 0.915 46 H 0.094 0.906 47 H 0.085 0.915 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.438 -0.707 1.084 2.761 hybrid contribution 1.406 -1.042 0.436 1.803 sum -1.033 -1.749 1.521 2.537 Atomic orbital electron populations 1.22361 0.89496 1.05956 1.04927 1.21887 0.97556 0.81887 0.95098 1.86125 1.81768 1.26211 1.28525 1.19204 0.96277 0.93227 0.83805 1.20581 1.03536 0.93931 0.99318 1.21020 0.97789 0.99671 0.91081 1.20275 1.03177 0.96737 0.95340 1.25081 0.98636 1.04897 0.89679 1.86572 1.25199 1.75374 1.48515 0.94129 0.83436 0.75927 0.79986 1.21011 0.95279 0.93693 0.97361 1.21542 1.06427 1.02590 0.91957 1.23486 0.77208 0.81043 0.87258 1.90719 1.36199 1.67398 1.46998 1.86431 1.69551 1.24698 1.45077 1.23346 0.99315 0.93555 0.84213 1.21225 1.02072 0.90261 0.96362 0.89384 1.21448 1.02103 0.94609 0.96259 1.21444 1.01216 0.94294 0.98009 1.21921 0.97573 0.81319 0.95130 0.92252 1.86480 1.75756 1.21327 1.56331 1.22197 1.02045 0.96454 0.97623 1.21523 1.00664 0.94211 0.98436 0.87482 0.88775 0.91559 0.84733 0.84505 0.83533 0.85460 0.76549 1.23268 1.21158 0.84117 0.82859 0.91001 0.90851 0.90726 0.90091 0.91341 0.91577 0.75721 0.91532 0.90567 0.91455 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.86 9.10 71.98 0.66 1.51 16 2 C 0.09 -0.05 2.75 29.85 0.08 0.03 16 3 O -0.31 -1.61 9.33 -73.37 -0.68 -2.29 16 4 C 0.12 0.30 6.60 22.51 0.15 0.45 16 5 C -0.16 -0.31 9.99 22.37 0.22 -0.09 16 6 C -0.08 0.06 8.66 22.25 0.19 0.25 16 7 C -0.15 0.16 5.35 -19.85 -0.11 0.05 16 8 C -0.07 0.13 2.80 71.24 0.20 0.33 16 9 O -0.55 -0.80 12.83 -148.98 -1.91 -2.71 16 10 Si 0.76 -1.65 29.88 68.60 2.05 0.40 16 11 C -0.06 0.08 9.68 22.25 0.22 0.29 16 12 C -0.21 0.32 8.24 22.37 0.18 0.51 16 13 C 0.47 2.04 7.33 71.23 0.52 2.57 16 14 O -0.52 -6.58 16.25 28.40 0.46 -6.12 16 15 O -0.34 -0.19 9.66 -51.45 -0.50 -0.69 16 16 C 0.07 -0.05 4.84 71.98 0.35 0.30 16 17 C -0.08 0.30 2.44 -10.79 -0.03 0.28 16 18 H 0.09 -0.31 8.14 -2.39 -0.02 -0.33 16 19 C -0.11 0.44 5.20 30.59 0.16 0.60 16 20 C -0.11 0.16 5.57 30.59 0.17 0.33 16 21 C 0.10 -0.16 3.47 30.59 0.11 -0.06 16 22 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 23 O -0.59 -0.72 13.32 -148.98 -1.98 -2.71 16 24 C -0.15 0.56 5.54 30.58 0.17 0.73 16 25 C -0.11 0.47 5.10 30.58 0.16 0.62 16 26 H 0.11 -0.89 8.11 -2.39 -0.02 -0.91 16 27 H 0.09 -0.66 6.91 -2.38 -0.02 -0.68 16 28 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 29 H 0.14 -0.75 6.31 -2.39 -0.02 -0.76 16 30 H 0.14 0.17 8.06 -2.91 -0.02 0.15 16 31 H 0.15 -0.61 4.83 -2.91 -0.01 -0.63 16 32 H 0.13 -0.48 7.96 -2.38 -0.02 -0.50 16 33 H 0.39 -1.41 8.70 -74.05 -0.64 -2.05 16 34 H -0.30 -1.76 7.11 99.48 0.71 -1.05 16 35 H -0.28 -0.52 7.00 99.48 0.70 0.18 16 36 H 0.14 -0.52 8.06 -2.91 -0.02 -0.54 16 37 H 0.15 -1.01 5.43 -2.91 -0.02 -1.03 16 38 H 0.07 0.00 8.13 -2.39 -0.02 -0.02 16 39 H 0.07 -0.01 8.13 -2.39 -0.02 -0.03 16 40 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 41 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 42 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 43 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 44 H 0.39 -2.57 9.08 -74.05 -0.67 -3.25 16 45 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 46 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 47 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 48 H 0.07 -0.30 7.82 -2.39 -0.02 -0.32 16 Total: 0.00 -19.84 387.03 0.52 -19.32 By element: Atomic # 1 Polarization: -13.59 SS G_CDS: -0.31 Total: -13.90 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 3.40 Total: 8.70 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -4.62 Total: -14.52 kcal Atomic # 14 Polarization: -1.65 SS G_CDS: 2.05 Total: 0.40 kcal Total: -19.84 0.52 -19.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_10157686_16737258.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.978 kcal (2) G-P(sol) polarization free energy of solvation -19.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds