Wall clock time and date at job start Sat Mar 6 2021 00:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86305 * 109.47061 * 2 1 4 4 C 1.50702 * 109.47527 * 239.99944 * 2 1 3 5 5 C 1.35489 * 126.07926 * 120.02245 * 4 2 1 6 6 N 1.34952 * 108.98266 * 179.71060 * 5 4 2 7 7 C 1.37696 * 108.73236 * 0.43908 * 6 5 4 8 8 C 1.46487 * 126.26658 * 179.82703 * 7 6 5 9 9 O 1.21623 * 120.00500 * 179.69457 * 8 7 6 10 10 O 1.34896 * 120.00113 * 359.68778 * 8 7 6 11 11 C 1.45198 * 117.00439 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47150 * 180.02562 * 11 10 8 13 13 H 1.08994 * 112.91116 * 43.75054 * 12 11 10 14 14 C 1.53787 * 113.61251 * 175.00363 * 12 11 10 15 15 C 1.53779 * 87.07963 * 139.97890 * 14 12 11 16 16 H 1.09006 * 113.61280 * 89.11401 * 15 14 12 17 17 O 1.42900 * 113.61410 * 219.93110 * 15 14 12 18 18 C 1.53779 * 87.08402 * 334.56577 * 15 14 12 19 19 C 1.37997 * 107.47050 * 359.56603 * 7 6 5 20 20 H 0.96700 * 114.00060 * 299.99898 * 1 2 3 21 21 H 1.09007 * 109.47465 * 119.99888 * 2 1 3 22 22 H 1.48503 * 109.99865 * 299.99790 * 3 2 1 23 23 H 1.48497 * 110.00080 * 61.31774 * 3 2 1 24 24 H 1.08003 * 125.50212 * 359.97438 * 5 4 2 25 25 H 0.97004 * 125.63315 * 180.26577 * 6 5 4 26 26 H 1.08998 * 109.46717 * 60.00120 * 11 10 8 27 27 H 1.09003 * 109.46832 * 300.00325 * 11 10 8 28 28 H 1.08997 * 113.61028 * 254.52850 * 14 12 11 29 29 H 1.09000 * 113.61529 * 25.42990 * 14 12 11 30 30 H 0.96694 * 114.00252 * 180.02562 * 17 15 14 31 31 H 1.09002 * 113.61557 * 270.88569 * 18 15 14 32 32 H 1.09004 * 113.61501 * 139.97990 * 18 15 14 33 33 H 1.08000 * 126.51232 * 180.24083 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7140 -0.1741 -2.1978 6 7 2.9621 -1.1146 -3.1333 7 6 2.3213 -2.2784 -2.7712 8 6 2.3309 -3.5403 -3.5150 9 8 1.7264 -4.5042 -3.0852 10 8 3.0100 -3.6333 -4.6768 11 6 2.9761 -4.9144 -5.3596 12 6 3.7969 -4.8276 -6.6478 13 1 4.7468 -4.3106 -6.5117 14 6 3.9265 -6.1698 -7.3872 15 6 3.7438 -5.3784 -8.6929 16 1 4.6792 -5.0118 -9.1159 17 8 2.9226 -6.0431 -9.6551 18 6 2.9916 -4.3280 -7.8589 19 6 1.6733 -2.0400 -1.5764 20 1 -0.3933 0.4417 0.7650 21 1 1.7924 -0.5138 0.8900 22 1 1.5615 2.4679 -1.2085 23 1 1.5878 2.4586 1.2242 24 1 3.0832 0.8407 -2.2149 25 1 3.5007 -0.9905 -3.9304 26 1 1.9445 -5.1695 -5.6021 27 1 3.3978 -5.6827 -4.7115 28 1 4.9101 -6.6291 -7.2890 29 1 3.1117 -6.8633 -7.1793 30 1 2.8042 -5.5504 -10.4786 31 1 1.9212 -4.5180 -7.7799 32 1 3.2204 -3.3004 -8.1415 33 1 1.0793 -2.7464 -1.0155 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_10542844_11354868.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:20:42 Heat of formation + Delta-G solvation = -91.308473 kcal Electronic energy + Delta-G solvation = -18190.105340 eV Core-core repulsion = 14991.428090 eV Total energy + Delta-G solvation = -3198.677250 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 254.103 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.53762 -41.12558 -40.16789 -37.76867 -37.42562 -36.02331 -32.81237 -31.14216 -29.56639 -26.87778 -26.62052 -24.73876 -23.24997 -21.40106 -20.93747 -20.56659 -19.55401 -18.65235 -18.43366 -17.98446 -17.46727 -16.81696 -16.50374 -15.89308 -15.42111 -15.32978 -15.07909 -14.76024 -14.47450 -14.12060 -13.95071 -13.62978 -13.56862 -13.39794 -12.86586 -12.57420 -12.49639 -12.20275 -11.96621 -11.74745 -11.58694 -11.29564 -10.84766 -10.47928 -9.94711 -9.39962 -4.99241 0.21934 1.25087 1.46931 1.51487 1.60453 1.96652 2.04706 2.13396 3.10727 3.32367 3.41590 3.43305 3.60825 3.80134 3.89139 3.92997 4.01485 4.10027 4.16414 4.24303 4.38935 4.52364 4.62280 4.66121 4.66505 4.81266 4.86504 4.99613 5.02233 5.22215 5.37075 5.56851 5.74824 6.25971 6.53326 6.62366 6.76499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.040 4.040 3 Si 0.680 3.320 4 C -0.170 4.170 5 C 0.049 3.951 6 N -0.519 5.519 7 C -0.048 4.048 8 C 0.537 3.463 9 O -0.496 6.496 10 O -0.362 6.362 11 C 0.082 3.918 12 C -0.111 4.111 13 H 0.106 0.894 14 C -0.120 4.120 15 C 0.076 3.924 16 H 0.085 0.915 17 O -0.559 6.559 18 C -0.165 4.165 19 C -0.063 4.063 20 H 0.378 0.622 21 H 0.075 0.925 22 H -0.254 1.254 23 H -0.262 1.262 24 H 0.180 0.820 25 H 0.428 0.572 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.381 0.619 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.201 3.903 -1.040 6.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.150 4.150 3 Si 0.581 3.419 4 C -0.177 4.177 5 C -0.089 4.089 6 N -0.114 5.114 7 C -0.158 4.158 8 C 0.382 3.618 9 O -0.384 6.384 10 O -0.279 6.279 11 C 0.009 3.991 12 C -0.129 4.129 13 H 0.124 0.876 14 C -0.157 4.157 15 C 0.017 3.983 16 H 0.103 0.897 17 O -0.365 6.365 18 C -0.203 4.203 19 C -0.089 4.089 20 H 0.226 0.774 21 H 0.092 0.908 22 H -0.179 1.179 23 H -0.186 1.186 24 H 0.197 0.803 25 H 0.267 0.733 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.114 0.886 30 H 0.228 0.772 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.971 3.610 -1.196 6.259 hybrid contribution -0.899 0.279 -0.228 0.969 sum 4.072 3.889 -1.423 5.808 Atomic orbital electron populations 1.86612 1.18163 1.79932 1.49595 1.24051 0.83921 1.09986 0.97089 0.95501 0.91218 0.74601 0.80624 1.18693 1.05673 0.94705 0.98594 1.21766 1.02186 0.94921 0.90056 1.41766 1.39502 1.09205 1.20953 1.19308 1.10266 0.86227 0.99971 1.19731 0.76285 0.86850 0.78900 1.90940 1.41815 1.37493 1.68104 1.86519 1.67668 1.38740 1.34999 1.23099 1.01258 0.82355 0.92405 1.22375 1.00015 0.98744 0.91801 0.87566 1.23072 1.03649 0.96029 0.92991 1.23280 0.93426 0.93333 0.88219 0.89708 1.86533 1.71443 1.49086 1.29439 1.23804 1.00708 0.99834 0.95910 1.21245 0.98366 0.96061 0.93248 0.77424 0.90756 1.17870 1.18637 0.80310 0.73336 0.90579 0.90507 0.89972 0.88625 0.77177 0.88995 0.90782 0.82895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.84 12.86 -35.23 -0.45 -1.29 16 2 C -0.04 0.01 3.01 36.01 0.11 0.11 16 3 Si 0.68 -1.22 30.59 -169.99 -5.20 -6.42 16 4 C -0.17 -0.19 5.47 -105.02 -0.57 -0.76 16 5 C 0.05 -0.06 10.43 -17.16 -0.18 -0.24 16 6 N -0.52 0.44 6.07 -9.53 -0.06 0.38 16 7 C -0.05 -0.11 7.10 -82.00 -0.58 -0.69 16 8 C 0.54 1.94 7.93 34.05 0.27 2.21 16 9 O -0.50 -3.24 16.68 -19.36 -0.32 -3.57 16 10 O -0.36 -0.60 10.23 -41.03 -0.42 -1.02 16 11 C 0.08 0.05 5.31 37.16 0.20 0.25 16 12 C -0.11 0.13 4.02 -89.80 -0.36 -0.23 16 13 H 0.11 -0.22 8.14 -51.93 -0.42 -0.64 16 14 C -0.12 0.11 7.47 -25.92 -0.19 -0.08 16 15 C 0.08 -0.08 5.21 -25.92 -0.14 -0.21 16 16 H 0.09 -0.21 8.14 -51.93 -0.42 -0.63 16 17 O -0.56 -0.29 13.67 -35.23 -0.48 -0.77 16 18 C -0.16 0.18 7.47 -25.92 -0.19 -0.01 16 19 C -0.06 -0.18 10.60 -39.09 -0.41 -0.60 16 20 H 0.38 -0.95 8.74 45.56 0.40 -0.55 16 21 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 22 H -0.25 -0.28 7.11 56.52 0.40 0.12 16 23 H -0.26 -0.17 7.11 56.52 0.40 0.24 16 24 H 0.18 -0.80 6.18 -52.48 -0.32 -1.13 16 25 H 0.43 -1.54 8.96 -40.82 -0.37 -1.91 16 26 H 0.08 0.09 7.84 -51.93 -0.41 -0.31 16 27 H 0.08 0.05 8.14 -51.93 -0.42 -0.38 16 28 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 29 H 0.10 0.00 8.10 -51.93 -0.42 -0.42 16 30 H 0.38 -1.34 9.12 45.56 0.42 -0.92 16 31 H 0.09 0.00 7.90 -51.93 -0.41 -0.41 16 32 H 0.07 -0.13 8.14 -51.93 -0.42 -0.56 16 33 H 0.15 0.49 8.06 -52.49 -0.42 0.06 16 LS Contribution 291.90 15.07 4.40 4.40 Total: 0.00 -9.22 291.90 -7.85 -17.07 By element: Atomic # 1 Polarization: -5.27 SS G_CDS: -3.26 Total: -8.53 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -2.06 Total: -0.25 kcal Atomic # 7 Polarization: 0.44 SS G_CDS: -0.06 Total: 0.38 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -1.68 Total: -6.65 kcal Atomic # 14 Polarization: -1.22 SS G_CDS: -5.20 Total: -6.42 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -9.22 -7.85 -17.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_10542844_11354868.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.234 kcal (2) G-P(sol) polarization free energy of solvation -9.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds