Wall clock time and date at job start Sat Mar 6 2021 01:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47428 * 2 1 4 4 C 1.53003 * 109.47360 * 240.00147 * 2 1 3 5 5 O 1.42896 * 109.47446 * 120.00242 * 2 1 3 6 6 C 1.42904 * 114.00189 * 60.00107 * 5 2 1 7 7 H 1.09005 * 112.84485 * 18.80281 * 6 5 2 8 8 C 1.53775 * 113.61891 * 150.00110 * 6 5 2 9 9 C 1.53777 * 87.08025 * 139.98049 * 8 6 5 10 10 H 1.09004 * 113.61440 * 89.20276 * 9 8 6 11 11 C 1.53005 * 113.61386 * 220.01981 * 9 8 6 12 12 O 1.45204 * 109.46880 * 185.00162 * 11 9 8 13 13 C 1.34897 * 116.99992 * 179.97438 * 12 11 9 14 14 O 1.21626 * 119.99805 * 0.02562 * 13 12 11 15 15 C 1.46483 * 120.00125 * 179.97438 * 13 12 11 16 16 C 1.37999 * 126.26203 * 180.33993 * 15 13 12 17 17 C 1.39795 * 106.96656 * 180.15820 * 16 15 13 18 18 C 1.50706 * 126.08036 * 179.84177 * 17 16 15 19 19 O 1.42895 * 109.46849 * 64.71097 * 18 17 16 20 20 Si 1.86294 * 109.47281 * 184.71579 * 18 17 16 21 21 C 1.35491 * 107.84403 * 359.57662 * 17 16 15 22 22 N 1.34955 * 108.98450 * 0.26654 * 21 17 16 23 23 C 1.53772 * 87.08556 * 334.56807 * 9 8 6 24 24 H 1.08996 * 109.47426 * 299.99464 * 1 2 3 25 25 H 1.09002 * 109.46930 * 60.00248 * 1 2 3 26 26 H 1.09006 * 109.46742 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47507 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47012 * 300.00530 * 3 2 1 29 29 H 1.09004 * 109.46603 * 59.99621 * 3 2 1 30 30 H 1.09000 * 109.47045 * 300.00090 * 4 2 1 31 31 H 1.09006 * 109.46934 * 59.99976 * 4 2 1 32 32 H 1.09001 * 109.47537 * 179.97438 * 4 2 1 33 33 H 1.09005 * 113.61124 * 25.43729 * 8 6 5 34 34 H 1.08999 * 113.61504 * 254.53283 * 8 6 5 35 35 H 1.08999 * 109.46909 * 65.00462 * 11 9 8 36 36 H 1.09001 * 109.47203 * 304.99982 * 11 9 8 37 37 H 1.07993 * 126.51641 * 359.97438 * 16 15 13 38 38 H 1.09001 * 109.46694 * 304.71563 * 18 17 16 39 39 H 0.96705 * 113.99673 * 180.02562 * 19 18 17 40 40 H 1.48504 * 109.99879 * 178.68194 * 20 18 17 41 41 H 1.48501 * 109.99823 * 299.99844 * 20 18 17 42 42 H 1.08003 * 125.50700 * 180.28436 * 21 17 16 43 43 H 0.97000 * 125.63425 * 179.97438 * 22 21 17 44 44 H 1.09002 * 113.61964 * 139.97668 * 23 9 8 45 45 H 1.08997 * 113.61834 * 270.88607 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0063 -0.6737 1.1667 6 6 1.5848 -2.0356 1.2644 7 1 1.2523 -2.4452 0.3105 8 6 2.5838 -2.9380 2.0077 9 6 1.3668 -3.6120 2.6629 10 1 0.9746 -4.4542 2.0929 11 6 1.5713 -3.9403 4.1433 12 8 0.4217 -4.6758 4.6392 13 6 0.4439 -5.0448 5.9365 14 8 1.3984 -4.7588 6.6339 15 6 -0.6822 -5.7891 6.5056 16 6 -0.7976 -6.2231 7.8105 17 6 -2.0227 -6.8886 7.9122 18 6 -2.5799 -7.5377 9.1530 19 8 -2.8304 -6.5374 10.1422 20 14 -4.1717 -8.4110 8.7357 21 6 -2.6230 -6.8413 6.6984 22 7 -1.8219 -6.1784 5.8381 23 6 0.6077 -2.2964 2.4230 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2073 -2.1393 32 1 3.1300 -0.7208 -1.2495 33 1 3.2171 -2.3998 2.7130 34 1 3.1478 -3.5993 1.3500 35 1 1.6821 -3.0151 4.7087 36 1 2.4690 -4.5474 4.2602 37 1 -0.0769 -6.0790 8.6018 38 1 -1.8603 -8.2592 9.5399 39 1 -3.1907 -6.8843 10.9699 40 1 -4.7148 -9.0819 9.9441 41 1 -5.1612 -7.4381 8.2069 42 1 -3.5869 -7.2651 6.4583 43 1 -2.0166 -6.0053 4.9037 44 1 -0.4236 -2.4398 2.1005 45 1 0.7009 -1.5829 3.2417 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_10542844_14598394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:56:20 Heat of formation + Delta-G solvation = -92.756394 kcal Electronic energy + Delta-G solvation = -25332.439605 eV Core-core repulsion = 21511.549092 eV Total energy + Delta-G solvation = -3820.890512 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 310.166 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.60360 -41.32089 -40.67742 -38.57623 -37.77901 -37.35215 -33.93139 -32.84224 -31.24238 -29.70099 -28.36028 -28.32665 -26.70701 -26.59393 -24.83001 -23.43691 -21.51698 -20.97402 -20.87923 -20.54065 -19.57562 -18.45912 -18.32067 -17.75033 -17.61201 -16.96414 -16.50961 -15.99827 -15.85654 -15.69549 -15.18990 -15.09179 -14.68643 -14.67221 -14.48817 -14.33361 -14.01746 -13.98423 -13.50335 -13.41451 -13.33626 -13.21907 -13.00754 -12.80888 -12.67250 -12.58346 -12.45632 -12.26379 -12.08837 -11.92033 -11.85393 -11.63066 -11.36724 -11.20161 -10.41870 -10.37976 -10.03043 -9.46228 -4.83738 0.06166 1.31623 1.37579 1.48798 1.70830 1.93250 2.05549 2.08812 2.71243 3.36313 3.50044 3.52864 3.63806 3.73906 3.83623 3.90656 3.96895 4.01197 4.07059 4.09081 4.10476 4.16289 4.19383 4.33827 4.46538 4.61642 4.62022 4.66464 4.73964 4.75176 4.77369 4.78595 4.83241 4.90170 4.93004 4.93933 4.98372 5.09936 5.11945 5.18913 5.30289 5.32386 5.37931 5.48939 5.65497 6.37760 6.41049 6.55007 6.69629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.097 3.903 3 C -0.140 4.140 4 C -0.176 4.176 5 O -0.384 6.384 6 C 0.061 3.939 7 H 0.107 0.893 8 C -0.126 4.126 9 C -0.099 4.099 10 H 0.121 0.879 11 C 0.079 3.921 12 O -0.353 6.353 13 C 0.538 3.462 14 O -0.536 6.536 15 C -0.066 4.066 16 C -0.084 4.084 17 C -0.192 4.192 18 C -0.062 4.062 19 O -0.565 6.565 20 Si 0.784 3.216 21 C 0.072 3.928 22 N -0.505 5.505 23 C -0.149 4.149 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.137 0.863 38 H 0.083 0.917 39 H 0.392 0.608 40 H -0.295 1.295 41 H -0.285 1.285 42 H 0.216 0.784 43 H 0.442 0.558 44 H 0.081 0.919 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.198 -4.417 -6.479 8.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.059 3.941 3 C -0.198 4.198 4 C -0.234 4.234 5 O -0.304 6.304 6 C 0.003 3.997 7 H 0.125 0.875 8 C -0.164 4.164 9 C -0.117 4.117 10 H 0.139 0.861 11 C 0.006 3.994 12 O -0.269 6.269 13 C 0.385 3.615 14 O -0.427 6.427 15 C -0.177 4.177 16 C -0.111 4.111 17 C -0.198 4.198 18 C -0.170 4.170 19 O -0.375 6.375 20 Si 0.688 3.312 21 C -0.068 4.068 22 N -0.100 5.100 23 C -0.187 4.187 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.103 0.897 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.155 0.845 38 H 0.101 0.899 39 H 0.242 0.758 40 H -0.222 1.222 41 H -0.212 1.212 42 H 0.233 0.767 43 H 0.284 0.716 44 H 0.099 0.901 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.352 -3.810 -6.693 8.846 hybrid contribution 0.307 0.822 1.149 1.446 sum -4.045 -2.988 -5.544 7.485 Atomic orbital electron populations 1.22440 0.94887 1.02829 1.02910 1.21687 0.93752 0.93316 0.85374 1.21803 1.01656 0.93417 1.02889 1.22447 1.01920 1.01224 0.97769 1.88024 1.74271 1.24231 1.43825 1.23677 0.95606 0.82307 0.98072 0.87548 1.23231 0.96340 0.97388 0.99428 1.22333 0.98716 0.98279 0.92389 0.86052 1.23217 0.86120 0.95306 0.94752 1.86522 1.46321 1.68040 1.26053 1.19985 0.85000 0.76132 0.80354 1.90911 1.35438 1.54590 1.61757 1.19131 0.90912 1.13903 0.93742 1.21337 0.98136 0.98016 0.93606 1.18983 0.96425 1.09254 0.95103 1.24509 1.10641 0.93886 0.87925 1.86571 1.86397 1.36516 1.27966 0.94275 0.72597 0.80099 0.84233 1.22337 0.97597 0.97910 0.88987 1.41767 1.13697 1.41294 1.13284 1.23607 0.99604 0.96217 0.99269 0.92650 0.90551 0.91777 0.92354 0.89676 0.92607 0.91552 0.90403 0.92248 0.89817 0.88941 0.91754 0.90650 0.84482 0.89912 0.75835 1.22200 1.21213 0.76738 0.71640 0.90081 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.29 8.38 71.98 0.60 0.89 16 2 C 0.10 0.02 1.11 -10.79 -0.01 0.01 16 3 C -0.14 -0.01 8.84 71.98 0.64 0.63 16 4 C -0.18 0.41 8.38 71.98 0.60 1.01 16 5 O -0.38 -1.52 10.00 -148.98 -1.49 -3.01 16 6 C 0.06 -0.04 2.82 31.12 0.09 0.05 16 7 H 0.11 -0.40 5.54 -2.38 -0.01 -0.41 16 8 C -0.13 0.19 7.47 31.12 0.23 0.42 16 9 C -0.10 0.20 4.02 -10.27 -0.04 0.16 16 10 H 0.12 -0.61 8.14 -2.39 -0.02 -0.63 16 11 C 0.08 0.21 5.32 71.98 0.38 0.59 16 12 O -0.35 -1.53 10.23 -58.11 -0.59 -2.12 16 13 C 0.54 4.89 7.93 69.97 0.55 5.44 16 14 O -0.54 -8.53 16.68 19.42 0.32 -8.21 16 15 C -0.07 -0.38 7.10 40.31 0.29 -0.10 16 16 C -0.08 -0.63 10.60 22.59 0.24 -0.39 16 17 C -0.19 -0.47 5.46 -20.12 -0.11 -0.58 16 18 C -0.06 0.01 3.01 71.24 0.21 0.23 16 19 O -0.56 -2.24 12.86 -148.98 -1.92 -4.15 16 20 Si 0.78 -3.71 30.60 68.60 2.10 -1.61 16 21 C 0.07 -0.24 10.43 83.58 0.87 0.63 16 22 N -0.50 1.10 6.07 -184.05 -1.12 -0.02 16 23 C -0.15 0.10 7.46 31.12 0.23 0.33 16 24 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 25 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 26 H 0.06 -0.18 7.02 -2.38 -0.02 -0.20 16 27 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 28 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 29 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.07 -0.25 6.24 -2.39 -0.01 -0.27 16 31 H 0.08 -0.33 8.14 -2.38 -0.02 -0.35 16 32 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.08 0.09 8.10 -2.38 -0.02 0.07 16 34 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 35 H 0.06 0.32 7.84 -2.39 -0.02 0.31 16 36 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 38 H 0.08 -0.21 7.96 -2.39 -0.02 -0.23 16 39 H 0.39 -1.66 8.74 -74.05 -0.65 -2.30 16 40 H -0.29 -0.23 7.11 99.48 0.71 0.47 16 41 H -0.29 -0.14 7.11 99.48 0.71 0.57 16 42 H 0.22 -2.42 6.20 -2.91 -0.02 -2.44 16 43 H 0.44 -3.65 8.96 -92.71 -0.83 -4.48 16 44 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 45 H 0.07 0.22 7.90 -2.39 -0.02 0.20 16 Total: 0.00 -20.81 371.13 1.65 -19.17 By element: Atomic # 1 Polarization: -8.94 SS G_CDS: -0.44 Total: -9.38 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 4.78 Total: 9.34 kcal Atomic # 7 Polarization: 1.10 SS G_CDS: -1.12 Total: -0.02 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -3.68 Total: -17.50 kcal Atomic # 14 Polarization: -3.71 SS G_CDS: 2.10 Total: -1.61 kcal Total: -20.81 1.65 -19.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_10542844_14598394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.590 kcal (2) G-P(sol) polarization free energy of solvation -20.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds